Wall clock time and date at job start Mon Mar 30 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.28329 * 299.31962 * 9 7 2 11 11 C 1.54252 * 110.32707 * 61.44962 * 9 7 2 12 12 C 1.54381 * 105.06115 * 118.89819 * 11 9 7 13 13 N 1.48550 * 104.59608 * 23.85351 * 12 11 9 14 14 C 1.46904 * 111.00104 * 200.96055 * 13 12 11 15 15 C 1.52993 * 109.47004 * 290.12534 * 14 13 12 16 16 H 1.09003 * 109.47406 * 59.99874 * 15 14 13 17 17 O 1.42903 * 109.47429 * 299.99606 * 15 14 13 18 18 C 1.53008 * 109.47103 * 180.02562 * 15 14 13 19 19 C 1.52993 * 109.46913 * 185.00072 * 18 15 14 20 20 C 1.54272 * 110.03399 * 292.16421 * 19 18 15 21 21 C 1.54889 * 104.19536 * 217.11031 * 20 19 18 22 22 C 1.54884 * 102.75189 * 37.93992 * 21 20 19 23 23 C 1.53880 * 110.02888 * 175.00190 * 19 18 15 24 24 C 1.48568 * 104.22266 * 320.51863 * 13 12 11 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09008 * 110.32538 * 237.79353 * 11 9 7 27 27 H 1.09000 * 110.32754 * 0.02562 * 11 9 7 28 28 H 1.09006 * 110.41381 * 142.63571 * 12 11 9 29 29 H 1.08998 * 110.41100 * 265.07324 * 12 11 9 30 30 H 1.09001 * 109.46731 * 50.12874 * 14 13 12 31 31 H 1.09003 * 109.47141 * 170.12246 * 14 13 12 32 32 H 0.96701 * 114.00010 * 300.00700 * 17 15 14 33 33 H 1.08997 * 109.46619 * 305.00100 * 18 15 14 34 34 H 1.08998 * 109.47000 * 64.99670 * 18 15 14 35 35 H 1.08997 * 110.02376 * 53.61080 * 19 18 15 36 36 H 1.08998 * 110.48216 * 335.78396 * 20 19 18 37 37 H 1.09000 * 110.48648 * 98.43156 * 20 19 18 38 38 H 1.09006 * 110.75774 * 279.62684 * 21 20 19 39 39 H 1.09003 * 110.91563 * 156.33023 * 21 20 19 40 40 H 1.08997 * 110.49138 * 203.38067 * 22 21 20 41 41 H 1.09001 * 110.59966 * 80.79343 * 22 21 20 42 42 H 1.09001 * 110.02951 * 238.56606 * 23 19 18 43 43 H 1.08990 * 110.03399 * 359.97438 * 23 19 18 44 44 H 1.08997 * 110.40978 * 280.70442 * 24 13 12 45 45 H 1.08994 * 110.41273 * 158.26535 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6282 -2.5759 0.8918 11 6 0.3850 -2.6178 -1.2703 12 6 0.9186 -3.8668 -2.0042 13 7 1.5555 -4.6833 -0.9391 14 6 2.5222 -5.6311 -1.5094 15 6 1.7746 -6.7168 -2.2859 16 1 1.1986 -6.2576 -3.0894 17 8 0.8910 -7.4111 -1.4031 18 6 2.7814 -7.7043 -2.8794 19 6 2.0448 -8.7173 -3.7580 20 6 1.1536 -9.6248 -2.8849 21 6 1.2599 -11.0180 -3.5533 22 6 2.7448 -11.0753 -3.9899 23 6 3.0566 -9.6397 -4.4605 24 6 2.2352 -3.6864 -0.0723 25 1 -0.4850 -0.8401 -0.0004 26 1 -0.6629 -2.7547 -1.0030 27 1 0.5051 -1.7323 -1.8945 28 1 0.0979 -4.4166 -2.4651 29 1 1.6548 -3.5808 -2.7554 30 1 3.1962 -5.1015 -2.1827 31 1 3.0981 -6.0903 -0.7059 32 1 1.3360 -7.8451 -0.6624 33 1 3.5098 -7.1622 -3.4823 34 1 3.2949 -8.2282 -2.0732 35 1 1.4372 -8.1970 -4.4984 36 1 1.5320 -9.6619 -1.8634 37 1 0.1220 -9.2730 -2.8982 38 1 0.6001 -11.0827 -4.4186 39 1 1.0364 -11.8104 -2.8389 40 1 2.8746 -11.7821 -4.8095 41 1 3.3818 -11.3476 -3.1483 42 1 2.9394 -9.5676 -5.5418 43 1 4.0722 -9.3653 -4.1758 44 1 3.1774 -3.3721 -0.5211 45 1 2.4059 -4.1003 0.9215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397655537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:17 Heat of formation + Delta-G solvation = -99.541542 kcal Electronic energy + Delta-G solvation = -21002.393493 eV Core-core repulsion = 18017.206462 eV Total energy + Delta-G solvation = -2985.187030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41642 -39.41339 -37.52683 -35.37992 -33.05029 -31.88354 -30.04551 -29.45519 -28.73722 -26.23359 -25.10341 -22.85391 -21.88270 -21.50248 -21.27394 -20.43141 -18.93422 -17.43528 -17.06487 -16.74297 -16.37973 -15.88310 -15.67432 -15.62591 -15.33593 -14.79748 -14.47891 -14.10975 -14.03511 -13.60272 -13.35321 -13.04021 -12.81160 -12.70776 -12.32890 -12.23802 -12.17671 -11.97930 -11.92260 -11.85929 -11.79335 -11.69711 -11.48973 -11.41322 -11.35127 -11.22849 -10.60315 -10.51816 -10.41042 -9.39820 -8.60397 -6.34058 1.52151 1.59969 1.79250 2.56633 2.98936 3.19246 3.61168 3.70292 3.76928 3.80966 3.92654 3.99193 4.15673 4.22218 4.33070 4.37420 4.42543 4.46136 4.60485 4.64594 4.68804 4.71076 4.77533 4.78685 4.85929 4.89633 4.97265 5.03126 5.06421 5.11702 5.13503 5.14221 5.30227 5.31270 5.35434 5.49453 5.52208 5.59333 5.61491 5.72783 6.12717 6.15431 6.22801 6.64635 6.99270 7.47580 8.78538 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.051797 B = 0.003275 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.441730 B = 8547.498172 C = 8715.390163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.031 4.031 3 Si 1.114 2.886 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.609 4.609 8 H 0.046 0.954 9 C 0.022 3.978 10 H -0.008 1.008 11 C -0.106 4.106 12 C 0.050 3.950 13 N -0.506 5.506 14 C 0.011 3.989 15 C 0.125 3.875 16 H 0.078 0.922 17 O -0.557 6.557 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.121 4.121 24 C 0.058 3.942 25 H 0.262 0.738 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.379 0.621 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -21.002 -8.219 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.230 4.230 3 Si 0.936 3.064 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.648 4.648 8 H 0.064 0.936 9 C 0.003 3.997 10 H 0.010 0.990 11 C -0.145 4.145 12 C -0.078 4.078 13 N -0.230 5.230 14 C -0.118 4.118 15 C 0.065 3.935 16 H 0.096 0.904 17 O -0.363 6.363 18 C -0.172 4.172 19 C -0.106 4.106 20 C -0.142 4.142 21 C -0.168 4.168 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.247 -19.484 -8.343 22.097 hybrid contribution 0.885 -0.991 0.033 1.329 sum 7.132 -20.475 -8.309 23.219 Atomic orbital electron populations 1.70879 1.07828 1.30549 1.48037 1.27233 0.96637 1.06291 0.92812 0.82974 0.74150 0.71495 0.77821 1.21020 1.19671 1.19621 1.22368 0.94017 0.92816 1.55558 0.93581 1.19513 0.93610 0.93777 0.92777 0.99024 1.22292 0.97803 0.96048 0.98314 1.22953 0.98329 0.93260 0.93261 1.65356 1.27560 1.13949 1.16119 1.23124 0.94213 0.95340 0.99074 1.21739 0.90732 0.90036 0.90991 0.90406 1.86606 1.37252 1.71180 1.41219 1.22314 0.97677 0.97019 1.00148 1.21688 0.96368 0.95712 0.96803 1.22332 0.99162 0.93903 0.98765 1.22576 0.96685 0.97386 1.00182 1.22344 0.96266 0.96437 1.00933 1.22232 0.98975 0.94807 0.99871 1.22936 0.95586 0.91592 0.96839 0.92772 0.94730 0.94209 0.90217 0.94492 0.94320 0.89614 0.77305 0.90808 0.90283 0.92426 0.91302 0.92930 0.92084 0.91321 0.91357 0.91400 0.91934 0.91330 0.95016 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 13.27 21.45 0.28 -57.54 16 2 C -0.03 -1.80 5.09 84.65 0.43 -1.37 16 3 Si 1.11 50.48 29.90 68.60 2.05 52.53 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.61 -34.74 8.37 25.60 0.21 -34.52 16 8 H 0.05 2.57 7.58 -2.91 -0.02 2.55 16 9 C 0.02 1.17 2.65 -10.65 -0.03 1.14 16 10 H -0.01 -0.49 8.04 -2.38 -0.02 -0.51 16 11 C -0.11 -5.18 5.03 31.49 0.16 -5.02 16 12 C 0.05 1.97 5.74 86.45 0.50 2.46 16 13 N -0.51 -18.72 5.24 -881.50 -4.62 -23.34 16 14 C 0.01 0.31 4.47 86.30 0.39 0.69 16 15 C 0.12 2.91 2.96 30.59 0.09 3.00 16 16 H 0.08 2.07 7.26 -2.39 -0.02 2.05 16 17 O -0.56 -13.70 10.76 -148.98 -1.60 -15.31 16 18 C -0.13 -2.31 4.15 30.59 0.13 -2.18 16 19 C -0.09 -1.50 2.93 -10.07 -0.03 -1.53 16 20 C -0.10 -1.81 4.74 31.67 0.15 -1.66 16 21 C -0.13 -1.94 6.91 31.88 0.22 -1.72 16 22 C -0.12 -1.61 6.83 31.67 0.22 -1.40 16 23 C -0.12 -1.74 6.46 31.32 0.20 -1.54 16 24 C 0.06 2.49 6.02 86.45 0.52 3.01 16 25 H 0.26 16.34 6.00 -92.71 -0.56 15.79 16 26 H 0.03 1.70 7.92 -2.38 -0.02 1.68 16 27 H 0.04 2.13 7.24 -2.39 -0.02 2.11 16 28 H 0.08 2.90 7.76 -2.38 -0.02 2.88 16 29 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 30 H 0.04 1.08 7.88 -2.39 -0.02 1.06 16 31 H 0.09 2.11 8.13 -2.39 -0.02 2.09 16 32 H 0.38 7.05 8.62 -74.06 -0.64 6.41 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.19 8.00 -2.39 -0.02 1.17 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.14 6.85 -2.39 -0.02 1.12 16 37 H 0.05 1.10 7.89 -2.39 -0.02 1.08 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.92 7.67 -2.39 -0.02 0.90 16 44 H 0.03 1.37 7.56 -2.39 -0.02 1.35 16 45 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -65.29 340.19 -0.22 -65.51 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.51 Total: 18.77 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.15 Total: -40.63 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -4.33 Total: -80.88 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.60 Total: -15.31 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -65.29 -0.22 -65.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397655537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.030 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds