Wall clock time and date at job start Mon Mar 30 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48510 * 109.46976 * 239.99342 * 3 2 1 5 5 H 1.48492 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47270 * 119.99786 * 3 2 1 7 7 C 1.37876 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00349 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.63358 * 56.88669 * 9 7 2 11 11 C 1.55139 * 110.70295 * 293.59355 * 9 7 2 12 12 C 1.54913 * 101.65166 * 205.96207 * 11 9 7 13 13 N 1.47841 * 104.79602 * 37.07054 * 12 11 9 14 14 C 1.46895 * 110.99929 * 213.63145 * 13 12 11 15 15 C 1.52996 * 109.47523 * 290.84495 * 14 13 12 16 16 H 1.09003 * 109.47109 * 59.99725 * 15 14 13 17 17 O 1.42904 * 109.47087 * 299.99822 * 15 14 13 18 18 C 1.52999 * 109.47228 * 179.97438 * 15 14 13 19 19 C 1.53001 * 109.47051 * 184.99843 * 18 15 14 20 20 C 1.54893 * 110.48625 * 289.77452 * 19 18 15 21 21 C 1.54887 * 102.74533 * 203.38022 * 20 19 18 22 22 C 1.54266 * 104.19888 * 37.94403 * 21 20 19 23 23 C 1.53872 * 106.59640 * 336.38805 * 22 21 20 24 24 C 1.47445 * 108.56666 * 335.90482 * 13 12 11 25 25 H 0.97000 * 119.99434 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.99622 * 324.05601 * 11 9 7 27 27 H 1.08999 * 110.99082 * 87.87627 * 11 9 7 28 28 H 1.08995 * 110.37490 * 278.23725 * 12 11 9 29 29 H 1.09005 * 110.36869 * 155.90236 * 12 11 9 30 30 H 1.09003 * 109.47152 * 170.84247 * 14 13 12 31 31 H 1.09003 * 109.47013 * 50.85095 * 14 13 12 32 32 H 0.96693 * 113.99834 * 300.00032 * 17 15 14 33 33 H 1.09008 * 109.46811 * 65.00183 * 18 15 14 34 34 H 1.08994 * 109.47244 * 304.99850 * 18 15 14 35 35 H 1.09001 * 110.53762 * 52.39068 * 19 18 15 36 36 H 1.09001 * 110.75228 * 85.06757 * 20 19 18 37 37 H 1.09000 * 110.75571 * 321.69391 * 20 19 18 38 38 H 1.09001 * 110.48816 * 279.26329 * 21 20 19 39 39 H 1.09004 * 110.48531 * 156.62545 * 21 20 19 40 40 H 1.09003 * 110.03179 * 95.67576 * 22 21 20 41 41 H 1.09005 * 110.03005 * 217.10316 * 22 21 20 42 42 H 1.09002 * 110.03208 * 119.28196 * 23 22 21 43 43 H 1.08996 * 110.03362 * 240.71095 * 23 22 21 44 44 H 1.09002 * 109.88714 * 120.39548 * 24 13 12 45 45 H 1.08999 * 109.88637 * 241.58313 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.5767 -2.5533 -0.8542 11 6 0.4733 -2.6834 1.3302 12 6 0.3728 -4.2265 1.4226 13 7 1.6617 -4.7211 0.8937 14 6 1.4854 -5.9954 0.1844 15 6 1.1361 -7.0946 1.1896 16 1 0.2116 -6.8349 1.7054 17 8 2.1935 -7.2222 2.1425 18 6 0.9519 -8.4216 0.4508 19 6 0.4815 -9.4931 1.4364 20 6 1.6232 -9.8701 2.4130 21 6 1.2203 -11.2917 2.8773 22 6 0.6381 -11.9526 1.6107 23 6 0.1684 -10.8090 0.6946 24 6 2.2283 -3.6934 0.0010 25 1 -0.4849 0.8401 -0.0004 26 1 1.0357 -2.2777 2.1711 27 1 -0.5164 -2.2307 1.2696 28 1 -0.4530 -4.5903 0.8113 29 1 0.2438 -4.5369 2.4595 30 1 2.4099 -6.2551 -0.3313 31 1 0.6790 -5.8981 -0.5425 32 1 3.0480 -7.4526 1.7532 33 1 1.9007 -8.7260 0.0087 34 1 0.2072 -8.2993 -0.3356 35 1 -0.3935 -9.1482 1.9873 36 1 1.6520 -9.1816 3.2576 37 1 2.5827 -9.8899 1.8963 38 1 0.4646 -11.2374 3.6609 39 1 2.0946 -11.8410 3.2267 40 1 1.4068 -12.5408 1.1095 41 1 -0.2061 -12.5891 1.8761 42 1 0.7091 -10.8421 -0.2512 43 1 -0.9037 -10.8905 0.5153 44 1 3.2023 -3.3754 0.3730 45 1 2.3267 -4.0925 -1.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397655539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:20 Heat of formation + Delta-G solvation = -78.086195 kcal Electronic energy + Delta-G solvation = -20897.459102 eV Core-core repulsion = 17913.202445 eV Total energy + Delta-G solvation = -2984.256657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.18525 -38.00026 -36.33310 -33.09041 -31.95965 -30.50281 -28.75104 -28.21636 -27.60070 -24.78274 -23.51531 -21.57092 -20.58850 -20.07238 -19.67679 -19.41692 -16.53305 -16.48296 -15.94039 -15.47197 -14.83738 -14.69872 -14.44107 -14.33133 -13.64114 -13.49863 -13.20666 -12.81368 -12.45326 -12.02076 -11.94614 -11.55313 -11.40155 -11.28749 -11.18545 -11.00102 -10.96720 -10.84685 -10.67656 -10.65898 -10.59484 -10.51519 -10.37652 -10.22099 -9.61337 -9.53549 -9.18170 -8.85113 -8.37332 -7.51029 -6.01155 -4.03560 3.33248 3.37614 3.40515 4.27548 4.44978 4.51066 4.54308 4.62173 4.80973 4.99256 5.22086 5.27035 5.30857 5.32465 5.38511 5.48469 5.55029 5.58775 5.63321 5.70327 5.80349 5.82265 5.87848 5.94351 5.99076 6.01314 6.13316 6.18789 6.21708 6.26809 6.32436 6.39067 6.42332 6.63813 6.89429 7.17800 7.22767 7.60842 7.64541 7.81209 7.92313 7.97835 8.01735 8.43401 8.97955 9.60207 11.08999 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.058321 B = 0.003161 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.987910 B = 8854.695117 C = 8929.208459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.035 3.965 10 H 0.029 0.971 11 C -0.105 4.105 12 C 0.038 3.962 13 N -0.521 5.521 14 C 0.020 3.980 15 C 0.116 3.884 16 H 0.093 0.907 17 O -0.543 6.543 18 C -0.144 4.144 19 C -0.086 4.086 20 C -0.111 4.111 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.123 4.123 24 C 0.047 3.953 25 H 0.260 0.740 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.366 0.634 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -20.844 1.975 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.015 3.985 10 H 0.047 0.953 11 C -0.143 4.143 12 C -0.089 4.089 13 N -0.245 5.245 14 C -0.110 4.110 15 C 0.056 3.944 16 H 0.111 0.889 17 O -0.347 6.347 18 C -0.183 4.183 19 C -0.104 4.104 20 C -0.148 4.148 21 C -0.167 4.167 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.080 4.080 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.212 0.788 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.435 -20.667 2.789 20.858 hybrid contribution 0.181 0.901 -1.286 1.581 sum 0.615 -19.766 1.503 19.832 Atomic orbital electron populations 1.69955 1.05935 1.26601 1.50485 1.24985 0.94856 0.99095 0.95033 0.86660 0.79591 0.83127 0.78633 1.20324 1.21365 1.20197 1.21045 0.92740 0.90232 1.50867 0.92538 1.19803 0.92857 0.92126 0.93686 0.95307 1.22628 1.01285 0.90287 1.00121 1.23142 0.89263 0.98129 0.98414 1.63564 1.24365 1.02175 1.34391 1.22978 1.00253 0.92352 0.95377 1.21867 0.91385 0.91442 0.89708 0.88930 1.86600 1.19751 1.92879 1.35445 1.22353 1.01785 0.95727 0.98385 1.21918 0.98598 0.93932 0.95990 1.22557 0.97509 0.95348 0.99396 1.22420 1.00189 0.96878 0.97250 1.22128 1.00097 0.97677 0.96338 1.22236 1.00715 0.94481 0.98620 1.23010 1.00068 0.92324 0.92625 0.93021 0.92466 0.91376 0.95317 0.92016 0.91497 0.94741 0.78816 0.91662 0.91344 0.90989 0.90193 0.91962 0.91956 0.92095 0.92219 0.92326 0.91963 0.92207 0.91327 0.95179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 12.48 55.43 0.69 -25.12 16 2 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.15 8.47 -34.44 -0.29 -14.44 16 8 H 0.06 1.54 7.53 -52.49 -0.40 1.15 16 9 C 0.03 0.87 2.78 -89.95 -0.25 0.62 16 10 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 11 C -0.10 -2.49 5.94 -24.59 -0.15 -2.64 16 12 C 0.04 0.76 5.78 -2.30 -0.01 0.74 16 13 N -0.52 -9.96 5.03 -231.25 -1.16 -11.12 16 14 C 0.02 0.30 4.23 -3.83 -0.02 0.28 16 15 C 0.12 1.48 2.95 -26.73 -0.08 1.40 16 16 H 0.09 1.31 7.49 -51.93 -0.39 0.92 16 17 O -0.54 -7.17 10.70 -35.23 -0.38 -7.55 16 18 C -0.14 -1.46 4.36 -26.73 -0.12 -1.57 16 19 C -0.09 -0.83 2.86 -88.96 -0.25 -1.08 16 20 C -0.11 -1.05 4.93 -24.74 -0.12 -1.17 16 21 C -0.13 -1.10 6.83 -25.07 -0.17 -1.27 16 22 C -0.12 -1.00 6.80 -25.61 -0.17 -1.18 16 23 C -0.12 -1.05 6.37 -25.61 -0.16 -1.22 16 24 C 0.05 1.01 6.45 -2.84 -0.02 0.99 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 27 H 0.07 1.72 7.76 -51.93 -0.40 1.32 16 28 H 0.03 0.55 7.62 -51.93 -0.40 0.15 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 31 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 32 H 0.37 3.84 9.05 45.56 0.41 4.25 16 33 H 0.06 0.61 8.02 -51.92 -0.42 0.20 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.87 7.18 -51.93 -0.37 0.50 16 37 H 0.06 0.57 7.97 -51.93 -0.41 0.16 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.53 7.63 -51.93 -0.40 1.13 16 45 H 0.03 0.61 7.55 -51.93 -0.39 0.21 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -28.94 344.31 -10.34 -39.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.75 Total: 1.78 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -1.91 Total: -18.90 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.47 Total: -36.24 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.38 Total: -7.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.94 -10.34 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397655539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.804 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds