Wall clock time and date at job start Mon Mar 30 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48510 * 109.46976 * 239.99342 * 3 2 1 5 5 H 1.48492 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47270 * 119.99786 * 3 2 1 7 7 C 1.37876 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00349 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.63358 * 56.88669 * 9 7 2 11 11 C 1.55139 * 110.70295 * 293.59355 * 9 7 2 12 12 C 1.54913 * 101.65166 * 205.96207 * 11 9 7 13 13 N 1.47841 * 104.79602 * 37.07054 * 12 11 9 14 14 C 1.46895 * 110.99929 * 213.63145 * 13 12 11 15 15 C 1.52996 * 109.47523 * 290.84495 * 14 13 12 16 16 H 1.09003 * 109.47109 * 59.99725 * 15 14 13 17 17 O 1.42904 * 109.47087 * 299.99822 * 15 14 13 18 18 C 1.52999 * 109.47228 * 179.97438 * 15 14 13 19 19 C 1.53001 * 109.47051 * 184.99843 * 18 15 14 20 20 C 1.54893 * 110.48625 * 289.77452 * 19 18 15 21 21 C 1.54887 * 102.74533 * 203.38022 * 20 19 18 22 22 C 1.54266 * 104.19888 * 37.94403 * 21 20 19 23 23 C 1.53872 * 106.59640 * 336.38805 * 22 21 20 24 24 C 1.47445 * 108.56666 * 335.90482 * 13 12 11 25 25 H 0.97000 * 119.99434 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.99622 * 324.05601 * 11 9 7 27 27 H 1.08999 * 110.99082 * 87.87627 * 11 9 7 28 28 H 1.08995 * 110.37490 * 278.23725 * 12 11 9 29 29 H 1.09005 * 110.36869 * 155.90236 * 12 11 9 30 30 H 1.09003 * 109.47152 * 170.84247 * 14 13 12 31 31 H 1.09003 * 109.47013 * 50.85095 * 14 13 12 32 32 H 0.96693 * 113.99834 * 300.00032 * 17 15 14 33 33 H 1.09008 * 109.46811 * 65.00183 * 18 15 14 34 34 H 1.08994 * 109.47244 * 304.99850 * 18 15 14 35 35 H 1.09001 * 110.53762 * 52.39068 * 19 18 15 36 36 H 1.09001 * 110.75228 * 85.06757 * 20 19 18 37 37 H 1.09000 * 110.75571 * 321.69391 * 20 19 18 38 38 H 1.09001 * 110.48816 * 279.26329 * 21 20 19 39 39 H 1.09004 * 110.48531 * 156.62545 * 21 20 19 40 40 H 1.09003 * 110.03179 * 95.67576 * 22 21 20 41 41 H 1.09005 * 110.03005 * 217.10316 * 22 21 20 42 42 H 1.09002 * 110.03208 * 119.28196 * 23 22 21 43 43 H 1.08996 * 110.03362 * 240.71095 * 23 22 21 44 44 H 1.09002 * 109.88714 * 120.39548 * 24 13 12 45 45 H 1.08999 * 109.88637 * 241.58313 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.5767 -2.5533 -0.8542 11 6 0.4733 -2.6834 1.3302 12 6 0.3728 -4.2265 1.4226 13 7 1.6617 -4.7211 0.8937 14 6 1.4854 -5.9954 0.1844 15 6 1.1361 -7.0946 1.1896 16 1 0.2116 -6.8349 1.7054 17 8 2.1935 -7.2222 2.1425 18 6 0.9519 -8.4216 0.4508 19 6 0.4815 -9.4931 1.4364 20 6 1.6232 -9.8701 2.4130 21 6 1.2203 -11.2917 2.8773 22 6 0.6381 -11.9526 1.6107 23 6 0.1684 -10.8090 0.6946 24 6 2.2283 -3.6934 0.0010 25 1 -0.4849 0.8401 -0.0004 26 1 1.0357 -2.2777 2.1711 27 1 -0.5164 -2.2307 1.2696 28 1 -0.4530 -4.5903 0.8113 29 1 0.2438 -4.5369 2.4595 30 1 2.4099 -6.2551 -0.3313 31 1 0.6790 -5.8981 -0.5425 32 1 3.0480 -7.4526 1.7532 33 1 1.9007 -8.7260 0.0087 34 1 0.2072 -8.2993 -0.3356 35 1 -0.3935 -9.1482 1.9873 36 1 1.6520 -9.1816 3.2576 37 1 2.5827 -9.8899 1.8963 38 1 0.4646 -11.2374 3.6609 39 1 2.0946 -11.8410 3.2267 40 1 1.4068 -12.5408 1.1095 41 1 -0.2061 -12.5891 1.8761 42 1 0.7091 -10.8421 -0.2512 43 1 -0.9037 -10.8905 0.5153 44 1 3.2023 -3.3754 0.3730 45 1 2.3267 -4.0925 -1.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397655539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:20 Heat of formation + Delta-G solvation = -95.970536 kcal Electronic energy + Delta-G solvation = -20898.234625 eV Core-core repulsion = 17913.202445 eV Total energy + Delta-G solvation = -2985.032180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29691 -39.25896 -37.42848 -35.01179 -33.06710 -31.99027 -30.03291 -29.42890 -28.82235 -26.44888 -24.93403 -22.73236 -21.49839 -21.38309 -21.21459 -20.54000 -18.58947 -17.54564 -16.97499 -16.61731 -16.36845 -16.01378 -15.84767 -15.52722 -14.70382 -14.68240 -14.28543 -14.11390 -13.98595 -13.72278 -13.24111 -13.00129 -12.72929 -12.70337 -12.62761 -12.36924 -12.24672 -12.01133 -11.94883 -11.78923 -11.68084 -11.53869 -11.41212 -11.31921 -11.20947 -11.16675 -10.94205 -10.50115 -10.42542 -9.08242 -8.15266 -6.24951 1.41121 1.42930 1.50450 2.42208 3.07157 3.16133 3.68563 3.75232 3.79462 3.85873 4.05106 4.12370 4.29399 4.31215 4.39368 4.50445 4.52387 4.54605 4.65521 4.71484 4.77505 4.78997 4.81182 4.89317 4.93375 4.98325 5.00563 5.09177 5.17051 5.18755 5.25860 5.32550 5.32999 5.36168 5.49737 5.56414 5.57558 5.64621 5.70102 5.86195 6.16227 6.31361 6.36684 6.83636 7.06115 7.42456 8.94240 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.058321 B = 0.003161 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.987910 B = 8854.695117 C = 8929.208459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.026 3.974 10 H -0.001 1.001 11 C -0.099 4.099 12 C 0.052 3.948 13 N -0.523 5.523 14 C 0.018 3.982 15 C 0.126 3.874 16 H 0.078 0.922 17 O -0.555 6.555 18 C -0.134 4.134 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.121 4.121 24 C 0.059 3.941 25 H 0.261 0.739 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.378 0.622 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -22.303 1.714 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.007 3.993 10 H 0.017 0.983 11 C -0.138 4.138 12 C -0.075 4.075 13 N -0.247 5.247 14 C -0.111 4.111 15 C 0.066 3.934 16 H 0.096 0.904 17 O -0.361 6.361 18 C -0.172 4.172 19 C -0.105 4.105 20 C -0.146 4.146 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.069 4.069 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.226 0.774 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.391 -22.147 2.525 22.334 hybrid contribution -0.118 1.332 -1.202 1.798 sum 1.273 -20.815 1.323 20.896 Atomic orbital electron populations 1.70081 1.07329 1.27389 1.51219 1.25793 0.95703 1.02590 0.94658 0.85628 0.78376 0.78834 0.78937 1.19424 1.20988 1.19628 1.21414 0.92970 0.91650 1.50852 0.92624 1.19779 0.93303 0.93189 0.93056 0.98289 1.22421 0.99368 0.93264 0.98709 1.22980 0.90121 0.94930 0.99487 1.63555 1.23749 1.02930 1.34498 1.23139 1.01159 0.90875 0.95890 1.21721 0.90710 0.91958 0.89020 0.90428 1.86583 1.20603 1.92961 1.35972 1.22247 1.02653 0.94132 0.98167 1.21894 0.98219 0.94392 0.95980 1.22502 0.97734 0.95541 0.98779 1.22426 1.00446 0.96417 0.97496 1.22132 1.00509 0.97572 0.95923 1.22220 1.00999 0.93865 0.98783 1.22769 0.98638 0.91640 0.93813 0.93028 0.94279 0.93698 0.94422 0.90797 0.89834 0.94847 0.77353 0.90294 0.90964 0.92150 0.91913 0.91381 0.92310 0.91394 0.91472 0.91804 0.91388 0.92014 0.92153 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.42 12.48 21.45 0.27 -54.15 16 2 C 0.01 0.64 5.36 84.65 0.45 1.09 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -29.85 8.47 25.60 0.22 -29.63 16 8 H 0.06 3.06 7.53 -2.91 -0.02 3.04 16 9 C 0.03 1.34 2.78 -10.36 -0.03 1.31 16 10 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 11 C -0.10 -4.83 5.94 31.98 0.19 -4.64 16 12 C 0.05 2.06 5.78 86.78 0.50 2.56 16 13 N -0.52 -19.41 5.03 -885.55 -4.45 -23.86 16 14 C 0.02 0.51 4.23 86.30 0.36 0.87 16 15 C 0.13 2.98 2.95 30.59 0.09 3.07 16 16 H 0.08 2.09 7.49 -2.39 -0.02 2.08 16 17 O -0.56 -13.64 10.70 -148.98 -1.59 -15.23 16 18 C -0.13 -2.38 4.36 30.59 0.13 -2.25 16 19 C -0.09 -1.51 2.86 -9.72 -0.03 -1.54 16 20 C -0.11 -1.86 4.93 31.89 0.16 -1.71 16 21 C -0.13 -1.98 6.83 31.67 0.22 -1.77 16 22 C -0.12 -1.71 6.80 31.32 0.21 -1.49 16 23 C -0.12 -1.80 6.37 31.32 0.20 -1.60 16 24 C 0.06 2.51 6.45 86.65 0.56 3.07 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.04 2.00 8.04 -2.39 -0.02 1.98 16 27 H 0.04 2.35 7.76 -2.39 -0.02 2.33 16 28 H 0.04 1.41 7.62 -2.39 -0.02 1.39 16 29 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.08 2.11 8.03 -2.39 -0.02 2.09 16 31 H 0.03 0.98 7.85 -2.39 -0.02 0.96 16 32 H 0.38 7.04 9.05 -74.06 -0.67 6.37 16 33 H 0.08 1.22 8.02 -2.38 -0.02 1.20 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.31 7.18 -2.39 -0.02 1.29 16 37 H 0.07 1.09 7.97 -2.39 -0.02 1.07 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.94 7.84 -2.39 -0.02 0.92 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 2.66 7.63 -2.39 -0.02 2.65 16 45 H 0.04 1.70 7.55 -2.39 -0.02 1.68 16 Total: -1.00 -62.06 344.31 -0.25 -62.31 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.26 Total: 17.34 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 3.24 Total: -32.64 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -4.19 Total: -78.02 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.59 Total: -15.23 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -62.06 -0.25 -62.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397655539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.662 kcal (2) G-P(sol) polarization free energy of solvation -62.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds