Wall clock time and date at job start Mon Mar 30 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47041 * 269.99885 * 3 2 1 5 5 H 1.48499 * 109.47407 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.47108 * 150.00266 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00302 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99823 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47256 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46626 * 65.00075 * 12 11 10 14 14 C 1.46905 * 110.99800 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47234 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47054 * 54.99977 * 15 14 13 17 17 C 1.53002 * 109.46970 * 295.00000 * 15 14 13 18 18 C 1.53004 * 109.47086 * 239.99946 * 17 15 14 19 19 C 1.52999 * 109.46722 * 300.00334 * 18 17 15 20 20 C 1.52994 * 109.47497 * 60.00159 * 19 18 17 21 21 C 1.52997 * 109.47006 * 175.00151 * 15 14 13 22 22 C 1.53003 * 109.47479 * 59.99710 * 21 15 14 23 23 C 1.53000 * 109.47052 * 60.00075 * 18 17 15 24 24 H 0.96993 * 119.99882 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46616 * 59.99939 * 9 7 2 26 26 H 1.08997 * 109.47141 * 300.00383 * 9 7 2 27 27 H 1.09004 * 109.46868 * 60.00838 * 11 10 9 28 28 H 1.08992 * 109.47403 * 300.00259 * 11 10 9 29 29 H 1.08993 * 109.46955 * 185.00422 * 12 11 10 30 30 H 1.09000 * 109.47050 * 305.00250 * 12 11 10 31 31 H 1.00904 * 111.00423 * 303.95194 * 13 12 11 32 32 H 1.09002 * 109.47091 * 300.00139 * 14 13 12 33 33 H 1.09001 * 109.46854 * 60.00166 * 14 13 12 34 34 H 1.09004 * 109.46992 * 0.02562 * 17 15 14 35 35 H 1.08995 * 109.46837 * 119.99826 * 17 15 14 36 36 H 1.08995 * 109.47058 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.47028 * 299.99336 * 19 18 17 38 38 H 1.09006 * 109.46817 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.47016 * 239.99793 * 20 19 18 40 40 H 1.09003 * 109.47360 * 119.99748 * 20 19 18 41 41 H 1.08999 * 109.47070 * 300.00102 * 21 15 14 42 42 H 1.08993 * 109.47177 * 180.02562 * 22 21 15 43 43 H 1.08992 * 109.47153 * 300.00491 * 22 21 15 44 44 H 1.09004 * 109.47123 * 59.99745 * 23 18 17 45 45 H 1.08990 * 109.47158 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0031 12 6 2.6481 -5.9563 0.0033 13 7 3.4089 -5.8866 1.2580 14 6 4.4605 -6.9118 1.2936 15 6 5.2291 -6.8086 2.6124 16 1 4.5303 -6.8737 3.4463 17 6 5.9672 -5.4695 2.6690 18 6 7.4709 -5.7211 2.7985 19 6 7.7474 -6.5105 4.0796 20 6 7.0093 -7.8495 4.0230 21 6 6.2407 -7.9528 2.7041 22 6 7.2217 -7.8613 1.5335 23 6 7.9598 -6.5223 1.5902 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6247 -2.5564 0.8919 27 1 0.9441 -4.9831 -0.8862 28 1 0.9459 -4.9818 0.8938 29 1 2.1820 -6.9376 -0.0851 30 1 3.3210 -5.7965 -0.8391 31 1 3.7977 -4.9656 1.3946 32 1 4.0074 -7.9000 1.2139 33 1 5.1460 -6.7582 0.4601 34 1 5.7698 -4.9070 1.7565 35 1 5.6189 -4.8988 3.5298 36 1 7.9967 -4.7672 2.8383 37 1 7.3991 -5.9397 4.9404 38 1 8.8187 -6.6893 4.1721 39 1 6.3105 -7.9146 4.8569 40 1 7.7300 -8.6647 4.0883 41 1 5.7149 -8.9067 2.6637 42 1 7.9420 -8.6767 1.5986 43 1 6.6741 -7.9348 0.5940 44 1 7.7627 -5.9599 0.6775 45 1 9.0308 -6.7019 1.6826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400074633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:47 Heat of formation + Delta-G solvation = -101.986139 kcal Electronic energy + Delta-G solvation = -20884.837945 eV Core-core repulsion = 17899.544909 eV Total energy + Delta-G solvation = -2985.293036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51049 -38.88178 -36.81660 -34.91847 -32.92801 -32.15543 -31.69160 -30.03946 -28.56299 -25.58143 -24.53605 -23.42215 -23.14485 -22.44548 -21.82902 -18.66290 -17.71092 -17.37421 -17.34157 -17.05557 -16.89312 -16.53146 -16.31465 -15.44109 -15.21618 -14.95262 -14.29871 -13.94495 -13.67912 -13.33406 -13.22532 -13.02162 -12.91375 -12.88924 -12.86433 -12.82777 -12.73441 -12.57200 -12.39490 -12.27866 -12.03886 -11.85288 -11.34765 -11.29233 -10.88861 -10.67400 -10.66522 -10.59854 -10.24883 -9.32537 -8.33286 -6.45955 1.39008 1.41960 1.54003 2.33665 3.00584 3.16927 3.22256 3.65909 3.73550 3.76436 4.13687 4.26252 4.30609 4.34560 4.41458 4.44236 4.44600 4.48752 4.52518 4.55014 4.58937 4.70357 4.73220 4.77125 4.81106 4.84126 4.89641 4.93319 5.06482 5.16483 5.16802 5.18631 5.30699 5.39929 5.46135 5.47648 5.52255 5.53355 5.55905 5.62892 5.94258 6.14054 6.40493 6.51689 6.79980 7.26045 8.79234 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.003757 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.140079 B = 7450.071559 C = 8264.526745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.075 3.925 13 N -0.699 5.699 14 C 0.067 3.933 15 C -0.073 4.073 16 H 0.068 0.932 17 C -0.111 4.111 18 C -0.088 4.088 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.076 4.076 22 C -0.113 4.113 23 C -0.113 4.113 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.016 1.016 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.030 0.970 31 H 0.341 0.659 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.409 -17.761 5.631 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.136 3.864 10 O -0.330 6.330 11 C -0.023 4.023 12 C -0.054 4.054 13 N -0.331 5.331 14 C -0.062 4.062 15 C -0.092 4.092 16 H 0.086 0.914 17 C -0.149 4.149 18 C -0.106 4.106 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.151 4.151 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.049 0.951 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.991 -18.013 5.975 24.185 hybrid contribution 0.065 1.417 -0.763 1.611 sum 15.055 -16.596 5.212 23.006 Atomic orbital electron populations 1.70070 1.07800 1.28684 1.50445 1.25968 0.95953 1.03406 0.93861 0.85180 0.78373 0.76989 0.78855 1.19240 1.19861 1.18861 1.21383 0.94070 0.90830 1.52336 0.92017 1.19793 0.88573 0.84637 0.93362 1.87750 1.35588 1.14401 1.95212 1.22619 0.96127 0.83874 0.99724 1.21907 0.94952 0.97755 0.90806 1.60567 1.28253 1.09244 1.35022 1.22123 0.91719 0.95549 0.96780 1.21079 0.95988 0.95019 0.97104 0.91377 1.21600 0.95576 0.96937 1.00767 1.21041 0.95044 0.98602 0.95927 1.21526 1.00585 0.96249 0.96525 1.21520 0.99124 0.97458 0.96668 1.21010 0.95393 0.97613 0.95511 1.21575 0.98168 0.97332 0.98013 1.21524 1.00080 0.96295 0.97153 0.92009 0.99721 0.99786 0.93295 0.93919 0.87736 0.95146 0.84026 0.90388 0.95301 0.93846 0.92821 0.91824 0.92429 0.91162 0.92044 0.90762 0.90335 0.90832 0.92277 0.93326 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.98 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -33.22 9.43 25.60 0.24 -32.98 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 9 C 0.21 12.19 5.69 71.24 0.41 12.59 16 10 O -0.41 -20.42 9.85 -148.98 -1.47 -21.88 16 11 C 0.05 2.08 6.28 71.98 0.45 2.53 16 12 C 0.07 2.29 6.11 86.31 0.53 2.81 16 13 N -0.70 -21.30 6.50 -513.86 -3.34 -24.64 16 14 C 0.07 1.58 4.41 86.30 0.38 1.96 16 15 C -0.07 -1.58 2.43 -10.79 -0.03 -1.60 16 16 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 17 C -0.11 -2.64 4.86 30.60 0.15 -2.49 16 18 C -0.09 -1.72 3.20 -10.79 -0.03 -1.75 16 19 C -0.11 -1.82 5.71 30.59 0.17 -1.65 16 20 C -0.11 -1.66 5.71 30.59 0.17 -1.48 16 21 C -0.08 -1.27 2.72 -10.79 -0.03 -1.30 16 22 C -0.11 -1.82 5.36 30.60 0.16 -1.66 16 23 C -0.11 -2.02 5.71 30.60 0.17 -1.84 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 25 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.34 11.99 6.79 -89.69 -0.61 11.38 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.03 0.70 6.71 -2.39 -0.02 0.68 16 34 H 0.04 1.20 6.67 -2.39 -0.02 1.18 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.00 6.54 -2.39 -0.02 0.99 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -65.17 342.95 1.04 -64.13 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.32 Total: 18.01 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.22 Total: -26.02 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -3.06 Total: -81.08 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.47 Total: -21.88 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.17 1.04 -64.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400074633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.860 kcal (2) G-P(sol) polarization free energy of solvation -65.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds