Wall clock time and date at job start Mon Mar 30 2020 06:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48507 * 109.47034 * 270.00124 * 3 2 1 5 5 H 1.48501 * 109.46767 * 29.99906 * 3 2 1 6 6 H 1.48493 * 109.47224 * 150.00178 * 3 2 1 7 7 C 1.37878 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99883 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00115 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99626 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46585 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46771 * 65.00781 * 12 11 10 14 14 C 1.46906 * 110.99895 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46904 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47021 * 64.99947 * 16 15 14 18 18 C 1.53004 * 117.49777 * 248.74507 * 17 16 15 19 19 C 1.53008 * 117.49844 * 180.08719 * 17 16 15 20 20 C 1.52999 * 109.46811 * 184.99727 * 16 15 14 21 21 C 1.53000 * 117.49815 * 128.74694 * 20 16 15 22 22 C 1.52997 * 117.49913 * 60.08519 * 20 16 15 23 23 H 0.96998 * 119.99682 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47568 * 59.99352 * 9 7 2 25 25 H 1.09009 * 109.46623 * 299.99763 * 9 7 2 26 26 H 1.08997 * 109.47195 * 60.00115 * 11 10 9 27 27 H 1.08994 * 109.47113 * 299.99582 * 11 10 9 28 28 H 1.08995 * 109.47532 * 305.00120 * 12 11 10 29 29 H 1.09005 * 109.46478 * 184.99832 * 12 11 10 30 30 H 1.00901 * 110.99796 * 303.94712 * 13 12 11 31 31 H 1.08993 * 109.47034 * 59.99137 * 14 13 12 32 32 H 1.09000 * 109.46693 * 299.99478 * 14 13 12 33 33 H 1.08993 * 109.47839 * 59.99803 * 15 14 13 34 34 H 1.09000 * 109.47160 * 299.99365 * 15 14 13 35 35 H 1.08992 * 109.47046 * 304.99570 * 16 15 14 36 36 H 1.08999 * 115.55462 * 34.41238 * 17 16 15 37 37 H 1.08998 * 117.49848 * 359.97438 * 18 17 16 38 38 H 1.08990 * 117.50042 * 145.02284 * 18 17 16 39 39 H 1.08999 * 117.49874 * 214.98314 * 19 17 16 40 40 H 1.08998 * 117.49249 * 359.97257 * 19 17 16 41 41 H 1.08998 * 115.55143 * 274.41849 * 20 16 15 42 42 H 1.08999 * 117.49895 * 359.97438 * 21 20 16 43 43 H 1.09003 * 117.50125 * 145.01944 * 21 20 16 44 44 H 1.09006 * 117.50358 * 214.97668 * 22 20 16 45 45 H 1.08999 * 117.50160 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5414 -0.0013 11 6 5.4124 -2.6542 -0.0014 12 6 5.8069 -4.1325 -0.0022 13 7 5.3676 -4.7557 -1.2578 14 6 5.7307 -6.1787 -1.2944 15 6 5.2573 -6.7920 -2.6138 16 6 5.6361 -8.2740 -2.6521 17 6 4.8716 -9.0242 -1.5596 18 6 5.6791 -9.5703 -0.3803 19 6 5.1162 -10.5292 -1.4325 20 6 5.2750 -8.8574 -4.0196 21 6 6.3633 -9.6298 -4.7679 22 6 5.9422 -8.2393 -5.2499 23 1 -0.4849 0.8401 -0.0004 24 1 3.8746 -0.6808 0.8904 25 1 3.8752 -0.6796 -0.8896 26 1 5.8152 -2.1715 0.8890 27 1 5.8151 -2.1698 -0.8909 28 1 5.3311 -4.6360 0.8393 29 1 6.8898 -4.2196 0.0872 30 1 4.3758 -4.6317 -1.3954 31 1 5.2548 -6.6966 -0.4619 32 1 6.8131 -6.2796 -1.2141 33 1 5.7329 -6.2742 -3.4466 34 1 4.1749 -6.6911 -2.6937 35 1 6.7077 -8.3795 -2.4836 36 1 3.8654 -8.6587 -1.3543 37 1 6.7549 -9.3956 -0.3830 38 1 5.2040 -9.5646 0.6006 39 1 4.2711 -11.1538 -1.1434 40 1 5.8215 -10.9848 -2.1275 41 1 4.2475 -9.2053 -4.1259 42 1 7.3366 -9.7220 -4.2861 43 1 6.0517 -10.4857 -5.3667 44 1 5.3539 -8.1809 -6.1657 45 1 6.6381 -7.4167 -5.0851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400748583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:59 Heat of formation + Delta-G solvation = -16.737213 kcal Electronic energy + Delta-G solvation = -19969.415906 eV Core-core repulsion = 16987.819541 eV Total energy + Delta-G solvation = -2981.596365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.28685 -37.35588 -36.35551 -35.64477 -32.76440 -32.08908 -29.11210 -27.46114 -25.39723 -22.76449 -22.60493 -21.90295 -21.70750 -21.41520 -21.33075 -19.80070 -16.85495 -16.27640 -15.93857 -15.70270 -15.45579 -15.07618 -14.77855 -14.47640 -14.11270 -13.74460 -13.67856 -12.97910 -12.57190 -12.30087 -12.24160 -11.92124 -11.82830 -11.74261 -11.68894 -11.48918 -11.21396 -10.95852 -10.80177 -10.70545 -10.57307 -10.47057 -10.36250 -9.97721 -9.90201 -9.85880 -9.18255 -8.84379 -8.46343 -8.18285 -6.11517 -4.10487 3.25655 3.32381 3.34143 3.57140 3.63261 4.24757 4.36025 4.40292 4.58710 4.71345 4.74696 4.80821 4.82852 4.93071 5.11705 5.14892 5.20204 5.25374 5.39385 5.43986 5.46774 5.48670 5.60037 5.65922 5.68040 5.73411 5.77610 5.82881 5.91480 5.92852 5.94232 5.96381 6.07588 6.12591 6.21399 6.29064 6.33944 6.62686 7.01232 7.24677 7.59557 7.67879 8.02071 8.66826 8.99161 9.47950 11.01524 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.002955 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.784887 B = 9474.505103 C = 9627.622431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.058 3.942 12 C 0.067 3.933 13 N -0.691 5.691 14 C 0.060 3.940 15 C -0.108 4.108 16 C -0.023 4.023 17 C -0.142 4.142 18 C -0.180 4.180 19 C -0.179 4.179 20 C -0.139 4.139 21 C -0.183 4.183 22 C -0.180 4.180 23 H 0.266 0.734 24 H 0.002 0.998 25 H -0.001 1.001 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.356 0.644 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.791 -19.082 -5.579 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.303 6.303 11 C -0.020 4.020 12 C -0.063 4.063 13 N -0.323 5.323 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.042 4.042 17 C -0.160 4.160 18 C -0.217 4.217 19 C -0.216 4.216 20 C -0.157 4.157 21 C -0.220 4.220 22 C -0.217 4.217 23 H 0.076 0.924 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.052 -18.904 -5.917 24.878 hybrid contribution -0.110 0.781 0.664 1.030 sum 14.942 -18.124 -5.253 24.069 Atomic orbital electron populations 1.69877 1.06066 1.27090 1.50407 1.24772 0.94812 0.98794 0.94631 0.86838 0.80318 0.83707 0.78808 1.19880 1.20815 1.19116 1.20891 0.88313 0.95270 1.51186 0.90046 1.20574 0.96062 0.79467 0.94338 1.87845 1.17723 1.29689 1.95084 1.22390 0.84806 0.95321 0.99511 1.21908 0.99413 0.94094 0.90864 1.60479 1.23683 1.13065 1.35102 1.21933 1.00078 0.88186 0.96695 1.21565 1.01765 0.93332 0.97950 1.20320 0.98760 0.94042 0.91102 1.22322 1.00352 0.95249 0.98040 1.23006 0.99764 1.04632 0.94325 1.22918 1.03420 0.92704 1.02573 1.22243 0.97774 1.03494 0.92168 1.23011 0.99344 0.95333 1.04340 1.22967 1.04065 0.96396 0.98242 0.92373 0.98064 0.98290 0.94082 0.93427 0.94730 0.90754 0.82504 0.95115 0.91892 0.90882 0.91637 0.91235 0.87773 0.89033 0.89014 0.89175 0.88868 0.87828 0.89134 0.89164 0.88934 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -15.52 9.99 -34.44 -0.34 -15.86 16 8 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.17 4.39 4.76 36.01 0.17 4.56 16 10 O -0.38 -8.94 9.85 -35.23 -0.35 -9.28 16 11 C 0.06 1.03 6.28 37.16 0.23 1.27 16 12 C 0.07 0.99 6.11 -3.82 -0.02 0.97 16 13 N -0.69 -10.24 6.50 -113.78 -0.74 -10.98 16 14 C 0.06 0.72 5.50 -3.82 -0.02 0.70 16 15 C -0.11 -1.16 4.84 -26.73 -0.13 -1.28 16 16 C -0.02 -0.21 2.16 -90.62 -0.20 -0.40 16 17 C -0.14 -1.27 4.12 -90.61 -0.37 -1.65 16 18 C -0.18 -1.52 10.18 -26.69 -0.27 -1.80 16 19 C -0.18 -1.44 9.89 -26.69 -0.26 -1.71 16 20 C -0.14 -1.18 4.81 -90.62 -0.44 -1.62 16 21 C -0.18 -1.39 10.18 -26.69 -0.27 -1.66 16 22 C -0.18 -1.49 9.68 -26.69 -0.26 -1.75 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 25 H 0.00 -0.01 7.57 -51.92 -0.39 -0.41 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.36 5.93 8.29 -39.29 -0.33 5.60 16 31 H 0.03 0.37 7.38 -51.93 -0.38 -0.01 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.81 7.13 -51.93 -0.37 0.44 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.62 7.66 -51.93 -0.40 0.23 16 36 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 42 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.81 7.59 -51.93 -0.39 0.42 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -30.78 363.54 -10.34 -41.12 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.56 Total: 1.97 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.28 Total: -18.21 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.03 Total: -37.98 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.35 Total: -9.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.78 -10.34 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400748583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.386 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds