Wall clock time and date at job start Mon Mar 30 2020 06:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48507 * 109.47034 * 270.00124 * 3 2 1 5 5 H 1.48501 * 109.46767 * 29.99906 * 3 2 1 6 6 H 1.48493 * 109.47224 * 150.00178 * 3 2 1 7 7 C 1.37878 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99883 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00115 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99626 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46585 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46771 * 65.00781 * 12 11 10 14 14 C 1.46906 * 110.99895 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46904 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47021 * 64.99947 * 16 15 14 18 18 C 1.53004 * 117.49777 * 248.74507 * 17 16 15 19 19 C 1.53008 * 117.49844 * 180.08719 * 17 16 15 20 20 C 1.52999 * 109.46811 * 184.99727 * 16 15 14 21 21 C 1.53000 * 117.49815 * 128.74694 * 20 16 15 22 22 C 1.52997 * 117.49913 * 60.08519 * 20 16 15 23 23 H 0.96998 * 119.99682 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47568 * 59.99352 * 9 7 2 25 25 H 1.09009 * 109.46623 * 299.99763 * 9 7 2 26 26 H 1.08997 * 109.47195 * 60.00115 * 11 10 9 27 27 H 1.08994 * 109.47113 * 299.99582 * 11 10 9 28 28 H 1.08995 * 109.47532 * 305.00120 * 12 11 10 29 29 H 1.09005 * 109.46478 * 184.99832 * 12 11 10 30 30 H 1.00901 * 110.99796 * 303.94712 * 13 12 11 31 31 H 1.08993 * 109.47034 * 59.99137 * 14 13 12 32 32 H 1.09000 * 109.46693 * 299.99478 * 14 13 12 33 33 H 1.08993 * 109.47839 * 59.99803 * 15 14 13 34 34 H 1.09000 * 109.47160 * 299.99365 * 15 14 13 35 35 H 1.08992 * 109.47046 * 304.99570 * 16 15 14 36 36 H 1.08999 * 115.55462 * 34.41238 * 17 16 15 37 37 H 1.08998 * 117.49848 * 359.97438 * 18 17 16 38 38 H 1.08990 * 117.50042 * 145.02284 * 18 17 16 39 39 H 1.08999 * 117.49874 * 214.98314 * 19 17 16 40 40 H 1.08998 * 117.49249 * 359.97257 * 19 17 16 41 41 H 1.08998 * 115.55143 * 274.41849 * 20 16 15 42 42 H 1.08999 * 117.49895 * 359.97438 * 21 20 16 43 43 H 1.09003 * 117.50125 * 145.01944 * 21 20 16 44 44 H 1.09006 * 117.50358 * 214.97668 * 22 20 16 45 45 H 1.08999 * 117.50160 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5414 -0.0013 11 6 5.4124 -2.6542 -0.0014 12 6 5.8069 -4.1325 -0.0022 13 7 5.3676 -4.7557 -1.2578 14 6 5.7307 -6.1787 -1.2944 15 6 5.2573 -6.7920 -2.6138 16 6 5.6361 -8.2740 -2.6521 17 6 4.8716 -9.0242 -1.5596 18 6 5.6791 -9.5703 -0.3803 19 6 5.1162 -10.5292 -1.4325 20 6 5.2750 -8.8574 -4.0196 21 6 6.3633 -9.6298 -4.7679 22 6 5.9422 -8.2393 -5.2499 23 1 -0.4849 0.8401 -0.0004 24 1 3.8746 -0.6808 0.8904 25 1 3.8752 -0.6796 -0.8896 26 1 5.8152 -2.1715 0.8890 27 1 5.8151 -2.1698 -0.8909 28 1 5.3311 -4.6360 0.8393 29 1 6.8898 -4.2196 0.0872 30 1 4.3758 -4.6317 -1.3954 31 1 5.2548 -6.6966 -0.4619 32 1 6.8131 -6.2796 -1.2141 33 1 5.7329 -6.2742 -3.4466 34 1 4.1749 -6.6911 -2.6937 35 1 6.7077 -8.3795 -2.4836 36 1 3.8654 -8.6587 -1.3543 37 1 6.7549 -9.3956 -0.3830 38 1 5.2040 -9.5646 0.6006 39 1 4.2711 -11.1538 -1.1434 40 1 5.8215 -10.9848 -2.1275 41 1 4.2475 -9.2053 -4.1259 42 1 7.3366 -9.7220 -4.2861 43 1 6.0517 -10.4857 -5.3667 44 1 5.3539 -8.1809 -6.1657 45 1 6.6381 -7.4167 -5.0851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400748583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:58 Heat of formation + Delta-G solvation = -35.117310 kcal Electronic energy + Delta-G solvation = -19970.212927 eV Core-core repulsion = 16987.819541 eV Total energy + Delta-G solvation = -2982.393386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02258 -38.92881 -37.05128 -36.87069 -34.87761 -33.21464 -30.67562 -29.13650 -26.42312 -24.00648 -23.47115 -23.28141 -22.71381 -22.48564 -22.09880 -20.54341 -19.05735 -17.60648 -16.97802 -16.88628 -16.52579 -16.36870 -16.18255 -15.76600 -15.14145 -14.94532 -14.80364 -14.55987 -14.03208 -13.67618 -13.35379 -13.13927 -12.94984 -12.69723 -12.62546 -12.48359 -12.36201 -12.35394 -12.16340 -11.84933 -11.80872 -11.64754 -11.36083 -11.21493 -11.07161 -10.93373 -10.66680 -10.62367 -10.35566 -9.34109 -8.38136 -6.46065 1.33311 1.36282 1.47139 2.29005 2.89381 2.94601 2.95232 3.09495 3.28254 3.62397 3.88707 4.01042 4.10837 4.15522 4.17882 4.25801 4.30135 4.33267 4.41206 4.50688 4.54150 4.58421 4.63061 4.72062 4.81186 4.82507 4.84128 4.90300 4.92201 4.98551 5.02206 5.08068 5.10805 5.19748 5.26993 5.30674 5.31493 5.42868 5.43076 5.55183 5.92434 6.14375 6.38849 6.57775 6.73667 7.18498 8.78967 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.002955 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.784887 B = 9474.505103 C = 9627.622431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.545 4.545 8 H 0.030 0.970 9 C 0.181 3.819 10 O -0.407 6.407 11 C 0.050 3.950 12 C 0.072 3.928 13 N -0.699 5.699 14 C 0.065 3.935 15 C -0.102 4.102 16 C -0.013 4.013 17 C -0.152 4.152 18 C -0.180 4.180 19 C -0.170 4.170 20 C -0.147 4.147 21 C -0.171 4.171 22 C -0.186 4.186 23 H 0.273 0.727 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.106 0.894 30 H 0.340 0.660 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.457 -18.744 -5.700 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.583 4.583 8 H 0.048 0.952 9 C 0.106 3.894 10 O -0.327 6.327 11 C -0.027 4.027 12 C -0.058 4.058 13 N -0.331 5.331 14 C -0.064 4.064 15 C -0.140 4.140 16 C -0.032 4.032 17 C -0.171 4.171 18 C -0.217 4.217 19 C -0.207 4.207 20 C -0.165 4.165 21 C -0.208 4.208 22 C -0.223 4.223 23 H 0.082 0.918 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.124 0.876 30 H 0.158 0.842 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.742 -18.598 -6.037 26.403 hybrid contribution -0.986 0.559 0.696 1.330 sum 16.756 -18.040 -5.342 25.193 Atomic orbital electron populations 1.70031 1.08254 1.28795 1.51082 1.25852 0.95818 1.03456 0.93451 0.85595 0.79420 0.77458 0.79785 1.18427 1.19806 1.16889 1.21165 0.90976 0.93827 1.52344 0.95167 1.20288 0.93201 0.80962 0.94982 1.87812 1.21309 1.28322 1.95264 1.22719 0.81778 0.97666 1.00523 1.21939 1.01064 0.92095 0.90656 1.60561 1.22508 1.14908 1.35080 1.21967 1.00760 0.86553 0.97103 1.21499 1.00644 0.94647 0.97200 1.20201 0.98919 0.92622 0.91437 1.22256 0.99856 0.96269 0.98691 1.23057 1.00054 1.04525 0.94100 1.22957 1.03519 0.91981 1.02255 1.22203 0.97935 1.04367 0.92030 1.23068 0.99096 0.95088 1.03543 1.23005 1.04172 0.96982 0.98174 0.91785 0.97060 0.97244 0.92375 0.92908 0.95394 0.87601 0.84238 0.95410 0.90495 0.91293 0.93212 0.90621 0.89264 0.88290 0.89201 0.88843 0.88069 0.88404 0.88440 0.88253 0.88741 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 2 C 0.01 0.73 5.47 84.66 0.46 1.19 16 3 Si 0.96 43.73 27.47 68.60 1.88 45.61 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.55 -33.56 9.99 25.60 0.26 -33.30 16 8 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 9 C 0.18 9.21 4.76 71.24 0.34 9.55 16 10 O -0.41 -18.98 9.85 -148.98 -1.47 -20.44 16 11 C 0.05 1.71 6.28 71.98 0.45 2.16 16 12 C 0.07 2.03 6.11 86.31 0.53 2.55 16 13 N -0.70 -20.34 6.50 -513.88 -3.34 -23.68 16 14 C 0.06 1.49 5.50 86.30 0.48 1.96 16 15 C -0.10 -2.16 4.84 30.60 0.15 -2.02 16 16 C -0.01 -0.22 2.16 -10.79 -0.02 -0.24 16 17 C -0.15 -2.67 4.12 -10.79 -0.04 -2.72 16 18 C -0.18 -2.84 10.18 30.62 0.31 -2.53 16 19 C -0.17 -2.52 9.89 30.62 0.30 -2.22 16 20 C -0.15 -2.39 4.81 -10.79 -0.05 -2.44 16 21 C -0.17 -2.30 10.18 30.62 0.31 -1.98 16 22 C -0.19 -2.91 9.68 30.62 0.30 -2.62 16 23 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 24 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 25 H 0.01 0.48 7.57 -2.38 -0.02 0.46 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.34 11.63 8.29 -89.69 -0.74 10.88 16 31 H 0.03 0.66 7.38 -2.39 -0.02 0.64 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.52 7.13 -2.39 -0.02 1.50 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 36 H 0.09 1.83 8.11 -2.39 -0.02 1.81 16 37 H 0.10 1.41 8.05 -2.39 -0.02 1.39 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 42 H 0.10 1.19 8.05 -2.39 -0.02 1.17 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.09 1.50 7.59 -2.39 -0.02 1.48 16 Total: -1.00 -67.54 363.54 1.27 -66.28 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.13 Total: 24.33 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 3.76 Total: -32.64 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.04 Total: -83.13 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.47 Total: -20.44 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -67.54 1.27 -66.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400748583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.159 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds