Wall clock time and date at job start Mon Mar 30 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48499 * 109.47280 * 240.00436 * 3 2 1 5 5 H 1.48504 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47189 * 119.99852 * 3 2 1 7 7 C 1.38818 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00283 * 201.47257 * 7 2 1 9 9 N 1.36938 * 119.99500 * 21.47301 * 7 2 1 10 10 C 1.46504 * 120.00263 * 36.98394 * 9 7 2 11 11 C 1.53002 * 109.47081 * 89.99841 * 10 9 7 12 12 C 1.52994 * 109.47329 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47775 * 179.97438 * 12 11 10 14 14 H 1.09011 * 110.43130 * 305.70421 * 13 12 11 15 15 C 1.54805 * 110.49448 * 183.15542 * 13 12 11 16 16 C 1.55216 * 101.98943 * 220.52070 * 15 13 12 17 17 O 1.44379 * 103.56897 * 36.87996 * 16 15 13 18 18 C 1.43745 * 106.97187 * 320.01279 * 17 16 15 19 19 C 1.46498 * 119.99786 * 216.97850 * 9 7 2 20 20 C 1.54268 * 110.03132 * 61.47615 * 19 9 7 21 21 C 1.54963 * 104.15886 * 217.13561 * 20 19 9 22 22 C 1.54894 * 102.78136 * 37.88665 * 21 20 19 23 23 C 1.53868 * 110.03597 * 304.25730 * 19 9 7 24 24 H 0.96996 * 119.99743 * 354.92092 * 1 2 3 25 25 H 1.09002 * 109.46749 * 330.00181 * 10 9 7 26 26 H 1.08995 * 109.46892 * 209.99890 * 10 9 7 27 27 H 1.09007 * 109.46991 * 300.00156 * 11 10 9 28 28 H 1.09000 * 109.46978 * 59.99744 * 11 10 9 29 29 H 1.09000 * 109.47084 * 300.00662 * 12 11 10 30 30 H 1.09003 * 109.46922 * 59.99693 * 12 11 10 31 31 H 1.09002 * 110.90417 * 338.64578 * 15 13 12 32 32 H 1.09003 * 110.90732 * 102.24104 * 15 13 12 33 33 H 1.09004 * 110.52044 * 278.38319 * 16 15 13 34 34 H 1.09003 * 110.78202 * 155.50165 * 16 15 13 35 35 H 1.09002 * 109.88215 * 267.08673 * 18 17 16 36 36 H 1.08994 * 110.00492 * 146.00986 * 18 17 16 37 37 H 1.09001 * 110.01946 * 182.86117 * 19 9 7 38 38 H 1.09010 * 110.48443 * 335.77907 * 20 19 9 39 39 H 1.08993 * 110.48960 * 98.42418 * 20 19 9 40 40 H 1.09000 * 110.72311 * 279.56827 * 21 20 19 41 41 H 1.09000 * 110.92229 * 156.29289 * 21 20 19 42 42 H 1.08994 * 110.48871 * 203.40799 * 22 21 20 43 43 H 1.09000 * 110.48890 * 80.75790 * 22 21 20 44 44 H 1.09005 * 110.03233 * 238.57173 * 23 19 9 45 45 H 1.09000 * 110.03005 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2022 -0.0005 8 1 3.0340 -1.2348 0.3418 9 7 1.3969 -2.3467 -0.4352 10 6 0.4635 -2.2945 -1.5632 11 6 1.2293 -2.5140 -2.8694 12 6 0.2547 -2.4589 -4.0475 13 6 1.0204 -2.6777 -5.3538 14 1 1.8432 -1.9673 -5.4361 15 6 0.0690 -2.5480 -6.5681 16 6 0.5592 -3.6994 -7.4862 17 8 0.9031 -4.7501 -6.5576 18 6 1.5463 -4.1239 -5.4349 19 6 1.6742 -3.6234 0.2277 20 6 1.2449 -3.5544 1.7079 21 6 2.3291 -4.3712 2.4554 22 6 3.6258 -3.9947 1.6964 23 6 3.1871 -3.9036 0.2203 24 1 -0.4849 0.8367 0.0744 25 1 -0.0235 -1.3197 -1.5869 26 1 -0.2894 -3.0742 -1.4480 27 1 1.9823 -1.7343 -2.9845 28 1 1.7164 -3.4888 -2.8456 29 1 -0.4987 -3.2382 -3.9325 30 1 -0.2321 -1.4839 -4.0710 31 1 -0.9674 -2.7040 -6.2685 32 1 0.1900 -1.5805 -7.0555 33 1 1.4353 -3.3879 -8.0551 34 1 -0.2363 -4.0249 -8.1566 35 1 2.6263 -4.1179 -5.5824 36 1 1.3007 -4.6596 -4.5180 37 1 1.1426 -4.4295 -0.2779 38 1 1.2386 -2.5212 2.0555 39 1 0.2635 -4.0090 1.8421 40 1 2.1308 -5.4399 2.3748 41 1 2.3920 -4.0693 3.5009 42 1 4.3808 -4.7706 1.8229 43 1 4.0044 -3.0327 2.0419 44 1 3.3897 -4.8462 -0.2884 45 1 3.7151 -3.0899 -0.2770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400935072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:08 Heat of formation + Delta-G solvation = -54.561316 kcal Electronic energy + Delta-G solvation = -21397.549123 eV Core-core repulsion = 18414.312582 eV Total energy + Delta-G solvation = -2983.236541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.37903 -37.71408 -35.19339 -33.62340 -31.32224 -30.38005 -28.61894 -27.80593 -26.48373 -25.22638 -23.24108 -22.17553 -20.42597 -19.93819 -19.75656 -19.02149 -16.56700 -16.27189 -15.79197 -15.37456 -14.82670 -14.71467 -14.18385 -14.00695 -13.62259 -12.93311 -12.85514 -12.62235 -12.49093 -12.45420 -11.72853 -11.51488 -11.25909 -11.01465 -11.00049 -10.75826 -10.64656 -10.54022 -10.37897 -10.26396 -10.23142 -10.14591 -10.11911 -9.91013 -9.68766 -9.56352 -9.44772 -9.36386 -8.41318 -6.42746 -5.73925 -3.27119 3.37243 3.43370 3.45554 4.01430 4.49672 4.65835 4.85112 4.98131 5.20493 5.32366 5.32668 5.40327 5.50310 5.52760 5.60726 5.67598 5.73808 5.76127 5.89714 5.97374 6.01778 6.12827 6.17407 6.30440 6.32256 6.36821 6.47065 6.48658 6.58624 6.60771 6.65008 6.68300 6.86400 6.89928 6.91831 6.94988 7.03735 7.22308 7.33387 7.43882 7.79249 7.92341 8.61394 9.27540 9.91448 10.49703 11.27841 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.005734 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.701064 B = 4881.736059 C = 6140.053364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.012 3.988 3 Si 0.892 3.108 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.247 4.247 8 H 0.060 0.940 9 N -0.579 5.579 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.106 4.106 13 C -0.121 4.121 14 H 0.080 0.920 15 C -0.152 4.152 16 C 0.046 3.954 17 O -0.384 6.384 18 C 0.051 3.949 19 C 0.171 3.829 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.133 4.133 24 H 0.254 0.746 25 H 0.095 0.905 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -6.402 -7.951 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.188 4.188 3 Si 0.722 3.278 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.377 4.377 8 H 0.077 0.923 9 N -0.298 5.298 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.144 4.144 13 C -0.139 4.139 14 H 0.098 0.902 15 C -0.190 4.190 16 C -0.031 4.031 17 O -0.303 6.303 18 C -0.026 4.026 19 C 0.063 3.937 20 C -0.170 4.170 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.173 4.173 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.535 -6.472 -8.030 10.427 hybrid contribution 0.555 1.196 0.076 1.320 sum 2.089 -5.276 -7.954 9.771 Atomic orbital electron populations 1.69888 1.05468 1.25782 1.52305 1.25150 0.94979 0.98380 1.00276 0.86533 0.79217 0.83804 0.78219 1.21041 1.21769 1.20881 1.18850 0.94261 0.85125 1.39501 0.92287 1.43948 1.51346 1.02658 1.31833 1.20955 0.90663 1.02290 0.84103 1.22237 0.98726 1.00367 0.96076 1.21587 0.98272 1.01661 0.92869 1.22602 0.98520 0.96842 0.95982 0.90170 1.23260 1.00564 0.99045 0.96110 1.23554 0.99207 0.87749 0.92604 1.88840 1.79176 1.31088 1.31182 1.23315 0.96286 0.93157 0.89807 1.21022 0.92379 0.88704 0.91589 1.22829 0.95929 1.00983 0.97283 1.22448 0.96499 0.98902 0.98349 1.22245 0.96602 1.00164 0.96476 1.22579 0.99245 1.00045 0.95411 0.93563 0.88752 0.96325 0.92460 0.93966 0.92385 0.91877 0.90372 0.90500 0.92623 0.89416 0.92813 0.89316 0.93605 0.89824 0.93798 0.92942 0.92961 0.93497 0.92030 0.93917 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 11.43 55.49 0.63 -24.35 16 2 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 3 Si 0.89 21.26 29.61 -169.99 -5.03 16.23 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.44 7.76 -15.06 -0.12 -6.55 16 8 H 0.06 1.56 6.99 -52.49 -0.37 1.19 16 9 N -0.58 -13.74 2.39 -164.39 -0.39 -14.14 16 10 C 0.15 3.30 5.26 -4.04 -0.02 3.28 16 11 C -0.13 -2.54 5.38 -26.73 -0.14 -2.68 16 12 C -0.11 -1.68 4.41 -26.74 -0.12 -1.79 16 13 C -0.12 -1.64 3.06 -89.10 -0.27 -1.92 16 14 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 15 C -0.15 -1.76 6.73 -24.61 -0.17 -1.93 16 16 C 0.05 0.51 7.72 38.33 0.30 0.81 16 17 O -0.38 -5.54 11.52 -35.23 -0.41 -5.95 16 18 C 0.05 0.70 6.94 37.73 0.26 0.97 16 19 C 0.17 3.55 3.41 -66.82 -0.23 3.32 16 20 C -0.13 -2.65 6.43 -25.03 -0.16 -2.81 16 21 C -0.12 -2.08 6.91 -24.70 -0.17 -2.25 16 22 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 23 C -0.13 -2.49 6.14 -25.61 -0.16 -2.65 16 24 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 25 H 0.09 2.43 5.47 -51.93 -0.28 2.15 16 26 H 0.02 0.41 7.96 -51.93 -0.41 -0.01 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.77 6.99 -51.93 -0.36 0.41 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.28 6.82 -51.93 -0.35 0.92 16 37 H 0.05 0.92 7.85 -51.93 -0.41 0.51 16 38 H 0.08 1.99 7.18 -51.92 -0.37 1.62 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.48 6.77 -51.93 -0.35 1.12 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -27.57 344.42 -9.64 -37.21 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -8.38 Total: 1.94 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.25 Total: -16.14 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.24 Total: -38.49 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.41 Total: -5.95 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.57 -9.64 -37.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400935072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.349 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds