Wall clock time and date at job start Mon Mar 30 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48499 * 109.47280 * 240.00436 * 3 2 1 5 5 H 1.48504 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47189 * 119.99852 * 3 2 1 7 7 C 1.38818 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00283 * 201.47257 * 7 2 1 9 9 N 1.36938 * 119.99500 * 21.47301 * 7 2 1 10 10 C 1.46504 * 120.00263 * 36.98394 * 9 7 2 11 11 C 1.53002 * 109.47081 * 89.99841 * 10 9 7 12 12 C 1.52994 * 109.47329 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47775 * 179.97438 * 12 11 10 14 14 H 1.09011 * 110.43130 * 305.70421 * 13 12 11 15 15 C 1.54805 * 110.49448 * 183.15542 * 13 12 11 16 16 C 1.55216 * 101.98943 * 220.52070 * 15 13 12 17 17 O 1.44379 * 103.56897 * 36.87996 * 16 15 13 18 18 C 1.43745 * 106.97187 * 320.01279 * 17 16 15 19 19 C 1.46498 * 119.99786 * 216.97850 * 9 7 2 20 20 C 1.54268 * 110.03132 * 61.47615 * 19 9 7 21 21 C 1.54963 * 104.15886 * 217.13561 * 20 19 9 22 22 C 1.54894 * 102.78136 * 37.88665 * 21 20 19 23 23 C 1.53868 * 110.03597 * 304.25730 * 19 9 7 24 24 H 0.96996 * 119.99743 * 354.92092 * 1 2 3 25 25 H 1.09002 * 109.46749 * 330.00181 * 10 9 7 26 26 H 1.08995 * 109.46892 * 209.99890 * 10 9 7 27 27 H 1.09007 * 109.46991 * 300.00156 * 11 10 9 28 28 H 1.09000 * 109.46978 * 59.99744 * 11 10 9 29 29 H 1.09000 * 109.47084 * 300.00662 * 12 11 10 30 30 H 1.09003 * 109.46922 * 59.99693 * 12 11 10 31 31 H 1.09002 * 110.90417 * 338.64578 * 15 13 12 32 32 H 1.09003 * 110.90732 * 102.24104 * 15 13 12 33 33 H 1.09004 * 110.52044 * 278.38319 * 16 15 13 34 34 H 1.09003 * 110.78202 * 155.50165 * 16 15 13 35 35 H 1.09002 * 109.88215 * 267.08673 * 18 17 16 36 36 H 1.08994 * 110.00492 * 146.00986 * 18 17 16 37 37 H 1.09001 * 110.01946 * 182.86117 * 19 9 7 38 38 H 1.09010 * 110.48443 * 335.77907 * 20 19 9 39 39 H 1.08993 * 110.48960 * 98.42418 * 20 19 9 40 40 H 1.09000 * 110.72311 * 279.56827 * 21 20 19 41 41 H 1.09000 * 110.92229 * 156.29289 * 21 20 19 42 42 H 1.08994 * 110.48871 * 203.40799 * 22 21 20 43 43 H 1.09000 * 110.48890 * 80.75790 * 22 21 20 44 44 H 1.09005 * 110.03233 * 238.57173 * 23 19 9 45 45 H 1.09000 * 110.03005 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2022 -0.0005 8 1 3.0340 -1.2348 0.3418 9 7 1.3969 -2.3467 -0.4352 10 6 0.4635 -2.2945 -1.5632 11 6 1.2293 -2.5140 -2.8694 12 6 0.2547 -2.4589 -4.0475 13 6 1.0204 -2.6777 -5.3538 14 1 1.8432 -1.9673 -5.4361 15 6 0.0690 -2.5480 -6.5681 16 6 0.5592 -3.6994 -7.4862 17 8 0.9031 -4.7501 -6.5576 18 6 1.5463 -4.1239 -5.4349 19 6 1.6742 -3.6234 0.2277 20 6 1.2449 -3.5544 1.7079 21 6 2.3291 -4.3712 2.4554 22 6 3.6258 -3.9947 1.6964 23 6 3.1871 -3.9036 0.2203 24 1 -0.4849 0.8367 0.0744 25 1 -0.0235 -1.3197 -1.5869 26 1 -0.2894 -3.0742 -1.4480 27 1 1.9823 -1.7343 -2.9845 28 1 1.7164 -3.4888 -2.8456 29 1 -0.4987 -3.2382 -3.9325 30 1 -0.2321 -1.4839 -4.0710 31 1 -0.9674 -2.7040 -6.2685 32 1 0.1900 -1.5805 -7.0555 33 1 1.4353 -3.3879 -8.0551 34 1 -0.2363 -4.0249 -8.1566 35 1 2.6263 -4.1179 -5.5824 36 1 1.3007 -4.6596 -4.5180 37 1 1.1426 -4.4295 -0.2779 38 1 1.2386 -2.5212 2.0555 39 1 0.2635 -4.0090 1.8421 40 1 2.1308 -5.4399 2.3748 41 1 2.3920 -4.0693 3.5009 42 1 4.3808 -4.7706 1.8229 43 1 4.0044 -3.0327 2.0419 44 1 3.3897 -4.8462 -0.2884 45 1 3.7151 -3.0899 -0.2770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400935072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:07 Heat of formation + Delta-G solvation = -67.912558 kcal Electronic energy + Delta-G solvation = -21398.128076 eV Core-core repulsion = 18414.312582 eV Total energy + Delta-G solvation = -2983.815495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43517 -39.34576 -36.72398 -35.15023 -33.07447 -31.72852 -29.83457 -29.33336 -28.14955 -26.85524 -24.69325 -23.41839 -21.90426 -21.31618 -21.08666 -20.74534 -18.12054 -17.57998 -17.14367 -16.88990 -16.36348 -16.00663 -15.85002 -15.36317 -15.18025 -14.52674 -14.19835 -14.06992 -13.94350 -13.67307 -13.27705 -12.97889 -12.75322 -12.72070 -12.36075 -12.33714 -12.22807 -11.99120 -11.83625 -11.78129 -11.71672 -11.66600 -11.53521 -11.34032 -11.32766 -11.13984 -11.06887 -10.59272 -10.42412 -8.38684 -7.75739 -5.32056 1.44815 1.47419 1.52908 2.53052 3.04867 3.28941 3.56249 3.68295 3.86641 3.97144 4.00960 4.04386 4.27803 4.30298 4.31896 4.40488 4.60304 4.65105 4.70351 4.77457 4.79129 4.81491 4.86816 4.95308 4.96055 4.97661 4.99035 5.04115 5.09830 5.21719 5.24104 5.25726 5.29995 5.32920 5.37264 5.54827 5.61097 5.69265 5.72783 5.79803 5.94865 5.97323 6.58100 7.27092 7.99686 8.51140 9.22202 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.005734 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.701064 B = 4881.736059 C = 6140.053364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.037 4.037 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.146 3.854 11 C -0.116 4.116 12 C -0.096 4.096 13 C -0.119 4.119 14 H 0.081 0.919 15 C -0.148 4.148 16 C 0.043 3.957 17 O -0.404 6.404 18 C 0.052 3.948 19 C 0.161 3.839 20 C -0.130 4.130 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.127 4.127 24 H 0.249 0.751 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -7.721 -8.808 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.233 4.233 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.071 0.929 9 N -0.312 5.312 10 C 0.020 3.980 11 C -0.155 4.155 12 C -0.135 4.135 13 C -0.138 4.138 14 H 0.099 0.901 15 C -0.186 4.186 16 C -0.033 4.033 17 O -0.324 6.324 18 C -0.025 4.025 19 C 0.054 3.946 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.166 4.166 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.640 -7.808 -8.890 12.124 hybrid contribution 0.189 1.538 0.351 1.589 sum 2.830 -6.271 -8.539 10.966 Atomic orbital electron populations 1.70025 1.06607 1.25803 1.54226 1.25724 0.95585 1.00923 1.01112 0.85671 0.78001 0.80602 0.78203 1.20720 1.22210 1.20479 1.18953 0.93948 0.86101 1.38061 0.92950 1.44154 1.51227 1.03193 1.32662 1.20886 0.90949 1.00424 0.85728 1.21965 0.98301 0.99913 0.95361 1.21464 0.97721 1.01261 0.93013 1.22539 0.98790 0.96980 0.95453 0.90063 1.23252 0.99828 1.00269 0.95227 1.23765 1.00488 0.86800 0.92265 1.88817 1.79348 1.32479 1.31722 1.23269 0.96739 0.92823 0.89620 1.21263 0.94179 0.87516 0.91645 1.22726 0.97523 0.99169 0.97564 1.22402 0.94585 0.99683 0.98365 1.22229 0.97435 1.00522 0.94908 1.22471 0.96969 1.00284 0.96865 0.94209 0.91956 0.96446 0.94471 0.93102 0.92128 0.92777 0.90560 0.88789 0.91188 0.87498 0.92014 0.90270 0.92853 0.94060 0.93779 0.90339 0.91881 0.90253 0.93619 0.91507 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.50 11.43 21.65 0.25 -53.25 16 2 C -0.04 -2.03 4.96 84.86 0.42 -1.61 16 3 Si 0.95 44.63 29.61 68.60 2.03 46.66 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.24 -12.78 7.76 84.03 0.65 -12.12 16 8 H 0.05 2.83 6.99 -2.92 -0.02 2.81 16 9 N -0.59 -28.69 2.39 -674.02 -1.61 -30.30 16 10 C 0.15 6.78 5.26 86.38 0.45 7.23 16 11 C -0.12 -4.40 5.38 30.59 0.16 -4.24 16 12 C -0.10 -3.03 4.41 30.59 0.13 -2.90 16 13 C -0.12 -3.08 3.06 -9.81 -0.03 -3.11 16 14 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 15 C -0.15 -3.12 6.73 31.97 0.22 -2.90 16 16 C 0.04 0.85 7.72 72.74 0.56 1.41 16 17 O -0.40 -10.91 11.52 -148.98 -1.72 -12.62 16 18 C 0.05 1.36 6.94 72.35 0.50 1.87 16 19 C 0.16 6.63 3.41 45.71 0.16 6.78 16 20 C -0.13 -5.26 6.43 31.70 0.20 -5.06 16 21 C -0.11 -3.51 6.91 31.91 0.22 -3.29 16 22 C -0.11 -3.58 6.83 31.67 0.22 -3.36 16 23 C -0.13 -4.54 6.14 31.32 0.19 -4.35 16 24 H 0.25 14.12 8.32 -92.71 -0.77 13.35 16 25 H 0.06 3.35 5.47 -2.39 -0.01 3.33 16 26 H 0.02 0.78 7.96 -2.39 -0.02 0.76 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.05 1.83 6.99 -2.39 -0.02 1.81 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.64 7.87 -2.39 -0.02 1.62 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 2.20 6.82 -2.39 -0.02 2.18 16 37 H 0.05 2.09 7.85 -2.39 -0.02 2.08 16 38 H 0.04 2.01 7.18 -2.38 -0.02 1.99 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.05 1.96 6.77 -2.39 -0.02 1.95 16 Total: -1.00 -60.55 344.42 3.94 -56.61 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.92 Total: 18.55 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.06 Total: -25.64 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.36 Total: -83.55 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.72 Total: -12.62 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.55 3.94 -56.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400935072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.303 kcal (2) G-P(sol) polarization free energy of solvation -60.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds