Wall clock time and date at job start Mon Mar 30 2020 07:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47351 * 270.00202 * 3 2 1 5 5 H 1.48500 * 109.46960 * 30.00281 * 3 2 1 6 6 H 1.48499 * 109.46947 * 149.99660 * 3 2 1 7 7 C 1.37876 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47154 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47545 * 179.97438 * 11 10 9 13 13 N 1.46489 * 109.47101 * 180.02562 * 12 11 10 14 14 C 1.46931 * 120.66222 * 90.00451 * 13 12 11 15 15 C 1.53571 * 108.09134 * 74.47096 * 14 13 12 16 16 C 1.53100 * 108.16609 * 43.54319 * 15 14 13 17 17 C 1.51109 * 111.68424 * 93.39775 * 16 15 14 18 18 C 1.52807 * 113.44489 * 292.95697 * 17 16 15 19 19 C 1.54622 * 108.39591 * 297.28923 * 18 17 16 20 20 C 1.53816 * 107.51334 * 109.40634 * 19 18 17 21 21 C 1.34480 * 120.65900 * 269.97607 * 13 12 11 22 22 O 1.21279 * 120.15033 * 355.50885 * 21 13 12 23 23 H 0.97002 * 120.00070 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47425 * 60.00313 * 9 7 2 25 25 H 1.09005 * 109.47551 * 299.99970 * 9 7 2 26 26 H 1.09003 * 109.47324 * 60.00379 * 10 9 7 27 27 H 1.08998 * 109.47355 * 300.00088 * 10 9 7 28 28 H 1.09006 * 109.47161 * 59.99851 * 11 10 9 29 29 H 1.09004 * 109.47509 * 300.00333 * 11 10 9 30 30 H 1.08997 * 109.46552 * 59.99806 * 12 11 10 31 31 H 1.09005 * 109.46727 * 300.00501 * 12 11 10 32 32 H 1.09002 * 109.74886 * 194.13746 * 14 13 12 33 33 H 1.09000 * 109.74335 * 314.81012 * 14 13 12 34 34 H 1.08998 * 109.70888 * 163.25760 * 15 14 13 35 35 H 1.09003 * 109.71534 * 283.89230 * 15 14 13 36 36 H 1.09004 * 109.05175 * 332.82465 * 16 15 14 37 37 H 1.08997 * 109.02886 * 213.96028 * 16 15 14 38 38 H 1.09000 * 108.68609 * 171.93779 * 17 16 15 39 39 H 1.08992 * 108.69124 * 53.98676 * 17 16 15 40 40 H 1.09000 * 109.67878 * 177.56279 * 18 17 16 41 41 H 1.09001 * 109.67774 * 57.01718 * 18 17 16 42 42 H 1.08997 * 109.85391 * 349.90135 * 19 18 17 43 43 H 1.09002 * 109.90528 * 228.93958 * 19 18 17 44 44 H 1.09003 * 109.23942 * 139.28625 * 20 19 18 45 45 H 1.08994 * 109.23536 * 19.88772 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4745 -6.1501 -0.0005 13 7 1.7419 -7.4187 -0.0005 14 6 1.3668 -8.0674 -1.2644 15 6 2.6312 -8.6901 -1.8745 16 6 3.4081 -9.3871 -0.7544 17 6 3.0453 -10.8502 -0.6501 18 6 1.6081 -11.0889 -0.1891 19 6 1.4506 -10.5113 1.2365 20 6 0.5626 -9.2596 1.1333 21 6 1.3999 -8.0130 1.1563 22 8 1.7662 -7.5447 2.2133 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6246 -2.5572 0.8897 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.8532 -5.0451 -0.8897 29 1 0.8538 -5.0446 0.8903 30 1 3.1017 -6.0922 0.8890 31 1 3.1005 -6.0924 -0.8910 32 1 0.6280 -8.8458 -1.0738 33 1 0.9534 -7.3273 -1.9496 34 1 2.3517 -9.4171 -2.6370 35 1 3.2480 -7.9090 -2.3189 36 1 3.1835 -8.8967 0.1929 37 1 4.4759 -9.2989 -0.9545 38 1 3.7228 -11.3285 0.0572 39 1 3.1803 -11.3141 -1.6271 40 1 1.3993 -12.1586 -0.1769 41 1 0.9172 -10.5873 -0.8668 42 1 2.4277 -10.2400 1.6360 43 1 0.9773 -11.2483 1.8853 44 1 -0.1317 -9.2415 1.9734 45 1 -0.0022 -9.2958 0.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403944061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:51 Heat of formation + Delta-G solvation = -61.675388 kcal Electronic energy + Delta-G solvation = -21138.687023 eV Core-core repulsion = 18155.141992 eV Total energy + Delta-G solvation = -2983.545031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65817 -37.25535 -36.09393 -34.30223 -33.01527 -32.32876 -30.16875 -28.17293 -27.20642 -25.28391 -23.70237 -22.34117 -21.74432 -20.11367 -20.02459 -18.74275 -17.45946 -16.43127 -16.17579 -15.59056 -15.16877 -14.81700 -14.59721 -14.41356 -14.24657 -13.58716 -13.30685 -12.83875 -12.70073 -12.53862 -12.23935 -12.15796 -11.91637 -11.70200 -11.65476 -11.35619 -11.26986 -10.94068 -10.90379 -10.58032 -10.51631 -10.46631 -10.43572 -10.39612 -9.63051 -9.60182 -9.32554 -9.04753 -8.46248 -8.30100 -5.95139 -3.97263 2.68384 3.05847 3.34755 3.40742 3.44790 4.32020 4.42683 4.49974 4.50291 4.62776 4.79585 4.88026 4.95219 5.03723 5.12937 5.20198 5.39290 5.40942 5.46741 5.50033 5.55158 5.63939 5.64798 5.72445 5.72923 5.85081 5.88579 5.90952 5.96885 6.07427 6.12430 6.17978 6.24740 6.53454 6.66297 6.83024 6.97921 7.21403 7.44187 7.73630 7.89550 8.05847 8.26294 8.48698 9.10163 9.66444 11.16277 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038741 B = 0.003347 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.576711 B = 8363.551269 C = 8628.157272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.130 4.130 12 C 0.115 3.885 13 N -0.605 5.605 14 C 0.093 3.907 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.111 4.111 20 C -0.152 4.152 21 C 0.514 3.486 22 O -0.543 6.543 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -24.998 -4.099 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.169 4.169 12 C -0.006 4.006 13 N -0.338 5.338 14 C -0.030 4.030 15 C -0.174 4.174 16 C -0.171 4.171 17 C -0.155 4.155 18 C -0.163 4.163 19 C -0.149 4.149 20 C -0.191 4.191 21 C 0.303 3.697 22 O -0.421 6.421 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.799 -24.613 -3.526 25.021 hybrid contribution 0.365 1.038 -0.152 1.111 sum 3.164 -23.574 -3.678 24.068 Atomic orbital electron populations 1.69973 1.06060 1.26492 1.51095 1.25037 0.94849 0.99244 0.95435 0.86601 0.79889 0.83533 0.78033 1.20708 1.21245 1.19867 1.21290 0.93039 0.91182 1.50246 0.92720 1.19082 0.94013 0.91351 0.97083 1.21560 0.99103 0.93641 1.00227 1.21983 0.98419 0.94711 1.01738 1.21623 0.94640 0.81557 1.02792 1.48159 1.56606 1.23103 1.05919 1.22170 0.97354 0.97706 0.85807 1.22087 0.97254 1.00077 0.97932 1.21412 0.99734 0.95404 1.00505 1.21223 0.96488 0.96630 1.01148 1.22158 0.97285 1.00869 0.95943 1.21995 1.00173 0.95309 0.97384 1.22179 0.98906 0.93309 1.04748 1.20447 0.80361 0.85336 0.83556 1.90729 1.55062 1.65885 1.30393 0.93075 0.96773 0.96700 0.93285 0.93448 0.92562 0.92248 0.90074 0.90842 0.89046 0.90438 0.90814 0.91373 0.90626 0.92299 0.92416 0.92493 0.91620 0.91218 0.90918 0.90865 0.88823 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.13 -2.33 5.54 -26.73 -0.15 -2.48 16 12 C 0.12 1.71 5.43 -4.04 -0.02 1.68 16 13 N -0.61 -7.62 1.44 -173.30 -0.25 -7.87 16 14 C 0.09 0.84 5.69 -3.51 -0.02 0.82 16 15 C -0.14 -1.07 5.58 -26.38 -0.15 -1.21 16 16 C -0.13 -1.16 5.28 -27.63 -0.15 -1.30 16 17 C -0.12 -0.83 4.89 -27.78 -0.14 -0.96 16 18 C -0.13 -0.80 5.62 -25.98 -0.15 -0.95 16 19 C -0.11 -0.89 5.65 -25.45 -0.14 -1.04 16 20 C -0.15 -1.46 5.37 -27.71 -0.15 -1.61 16 21 C 0.51 7.16 5.20 -11.37 -0.06 7.10 16 22 O -0.54 -10.11 16.73 5.56 0.09 -10.02 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 31 H 0.07 0.95 7.64 -51.93 -0.40 0.56 16 32 H 0.09 0.66 3.37 -51.93 -0.17 0.49 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.46 7.81 -51.93 -0.41 0.06 16 35 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 36 H 0.08 0.84 3.72 -51.93 -0.19 0.65 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.06 0.36 8.04 -51.93 -0.42 -0.06 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.41 5.09 -51.93 -0.26 0.14 16 42 H 0.07 0.72 6.62 -51.93 -0.34 0.37 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.09 0.68 4.79 -51.93 -0.25 0.43 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -33.48 337.36 -9.01 -42.49 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.85 Total: -3.97 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.80 Total: -15.91 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.49 Total: -34.83 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.48 -9.01 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403944061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.185 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds