Wall clock time and date at job start Mon Mar 30 2020 07:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47351 * 270.00202 * 3 2 1 5 5 H 1.48500 * 109.46960 * 30.00281 * 3 2 1 6 6 H 1.48499 * 109.46947 * 149.99660 * 3 2 1 7 7 C 1.37876 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47154 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47545 * 179.97438 * 11 10 9 13 13 N 1.46489 * 109.47101 * 180.02562 * 12 11 10 14 14 C 1.46931 * 120.66222 * 90.00451 * 13 12 11 15 15 C 1.53571 * 108.09134 * 74.47096 * 14 13 12 16 16 C 1.53100 * 108.16609 * 43.54319 * 15 14 13 17 17 C 1.51109 * 111.68424 * 93.39775 * 16 15 14 18 18 C 1.52807 * 113.44489 * 292.95697 * 17 16 15 19 19 C 1.54622 * 108.39591 * 297.28923 * 18 17 16 20 20 C 1.53816 * 107.51334 * 109.40634 * 19 18 17 21 21 C 1.34480 * 120.65900 * 269.97607 * 13 12 11 22 22 O 1.21279 * 120.15033 * 355.50885 * 21 13 12 23 23 H 0.97002 * 120.00070 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47425 * 60.00313 * 9 7 2 25 25 H 1.09005 * 109.47551 * 299.99970 * 9 7 2 26 26 H 1.09003 * 109.47324 * 60.00379 * 10 9 7 27 27 H 1.08998 * 109.47355 * 300.00088 * 10 9 7 28 28 H 1.09006 * 109.47161 * 59.99851 * 11 10 9 29 29 H 1.09004 * 109.47509 * 300.00333 * 11 10 9 30 30 H 1.08997 * 109.46552 * 59.99806 * 12 11 10 31 31 H 1.09005 * 109.46727 * 300.00501 * 12 11 10 32 32 H 1.09002 * 109.74886 * 194.13746 * 14 13 12 33 33 H 1.09000 * 109.74335 * 314.81012 * 14 13 12 34 34 H 1.08998 * 109.70888 * 163.25760 * 15 14 13 35 35 H 1.09003 * 109.71534 * 283.89230 * 15 14 13 36 36 H 1.09004 * 109.05175 * 332.82465 * 16 15 14 37 37 H 1.08997 * 109.02886 * 213.96028 * 16 15 14 38 38 H 1.09000 * 108.68609 * 171.93779 * 17 16 15 39 39 H 1.08992 * 108.69124 * 53.98676 * 17 16 15 40 40 H 1.09000 * 109.67878 * 177.56279 * 18 17 16 41 41 H 1.09001 * 109.67774 * 57.01718 * 18 17 16 42 42 H 1.08997 * 109.85391 * 349.90135 * 19 18 17 43 43 H 1.09002 * 109.90528 * 228.93958 * 19 18 17 44 44 H 1.09003 * 109.23942 * 139.28625 * 20 19 18 45 45 H 1.08994 * 109.23536 * 19.88772 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4745 -6.1501 -0.0005 13 7 1.7419 -7.4187 -0.0005 14 6 1.3668 -8.0674 -1.2644 15 6 2.6312 -8.6901 -1.8745 16 6 3.4081 -9.3871 -0.7544 17 6 3.0453 -10.8502 -0.6501 18 6 1.6081 -11.0889 -0.1891 19 6 1.4506 -10.5113 1.2365 20 6 0.5626 -9.2596 1.1333 21 6 1.3999 -8.0130 1.1563 22 8 1.7662 -7.5447 2.2133 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6246 -2.5572 0.8897 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.8532 -5.0451 -0.8897 29 1 0.8538 -5.0446 0.8903 30 1 3.1017 -6.0922 0.8890 31 1 3.1005 -6.0924 -0.8910 32 1 0.6280 -8.8458 -1.0738 33 1 0.9534 -7.3273 -1.9496 34 1 2.3517 -9.4171 -2.6370 35 1 3.2480 -7.9090 -2.3189 36 1 3.1835 -8.8967 0.1929 37 1 4.4759 -9.2989 -0.9545 38 1 3.7228 -11.3285 0.0572 39 1 3.1803 -11.3141 -1.6271 40 1 1.3993 -12.1586 -0.1769 41 1 0.9172 -10.5873 -0.8668 42 1 2.4277 -10.2400 1.6360 43 1 0.9773 -11.2483 1.8853 44 1 -0.1317 -9.2415 1.9734 45 1 -0.0022 -9.2958 0.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403944061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:51 Heat of formation + Delta-G solvation = -80.194287 kcal Electronic energy + Delta-G solvation = -21139.490063 eV Core-core repulsion = 18155.141992 eV Total energy + Delta-G solvation = -2984.348070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63365 -38.16153 -37.32953 -35.89444 -34.27652 -33.77402 -31.44561 -29.56318 -27.98139 -26.85683 -24.88733 -23.34380 -22.96444 -21.84308 -20.72365 -19.73140 -18.49088 -18.37488 -17.35683 -16.66350 -16.40217 -16.17575 -15.88003 -15.55533 -15.12669 -14.58343 -14.55314 -14.06678 -13.89257 -13.76590 -13.55429 -13.40341 -13.28226 -12.85207 -12.82056 -12.45460 -12.38851 -12.27971 -12.17934 -12.06554 -11.93304 -11.55830 -11.44405 -11.37811 -11.18545 -11.16005 -10.99552 -10.62105 -10.57520 -9.62391 -8.21731 -6.33657 1.38122 1.40440 1.51624 1.61834 2.05771 2.39869 3.10808 3.53013 3.74660 3.87754 3.96587 4.05015 4.05627 4.18472 4.25834 4.31954 4.36109 4.43093 4.47079 4.56788 4.61008 4.71710 4.84792 4.85775 4.90037 4.99844 5.02047 5.08281 5.11246 5.16275 5.21791 5.24339 5.27462 5.34640 5.39036 5.49826 5.51550 5.58325 5.64469 5.72748 5.83299 6.22942 6.43378 6.83351 7.19626 7.35762 8.90287 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038741 B = 0.003347 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.576711 B = 8363.551269 C = 8628.157272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.025 3.975 10 C -0.095 4.095 11 C -0.116 4.116 12 C 0.125 3.875 13 N -0.602 5.602 14 C 0.087 3.913 15 C -0.129 4.129 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.146 4.146 21 C 0.507 3.493 22 O -0.603 6.603 23 H 0.264 0.736 24 H -0.005 1.005 25 H -0.019 1.019 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 -26.353 -6.005 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.155 4.155 12 C 0.003 3.997 13 N -0.333 5.333 14 C -0.035 4.035 15 C -0.167 4.167 16 C -0.171 4.171 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.146 4.146 20 C -0.185 4.185 21 C 0.297 3.703 22 O -0.484 6.484 23 H 0.073 0.927 24 H 0.013 0.987 25 H -0.001 1.001 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.258 -26.000 -5.474 26.769 hybrid contribution 0.199 1.450 0.445 1.529 sum 3.457 -24.551 -5.029 25.298 Atomic orbital electron populations 1.70109 1.07896 1.27818 1.51687 1.26044 0.95827 1.03563 0.94641 0.85402 0.78555 0.78138 0.78689 1.19314 1.20727 1.18842 1.21733 0.93606 0.92441 1.50583 0.92105 1.18999 0.94441 0.93346 0.94447 1.21364 0.98020 0.93285 1.00648 1.21794 0.98492 0.94396 1.00817 1.21329 0.93808 0.81680 1.02913 1.48217 1.55755 1.22093 1.07226 1.22488 0.98597 0.98317 0.84073 1.22069 0.96269 1.00384 0.97965 1.21392 0.99652 0.96570 0.99465 1.21200 0.96920 0.95276 1.01907 1.22161 0.96944 1.02008 0.94567 1.22002 0.98671 0.94768 0.99127 1.22247 0.98500 0.91687 1.06102 1.21272 0.79911 0.86174 0.82900 1.90695 1.57433 1.67737 1.32550 0.92734 0.98690 1.00099 0.93933 0.91772 0.91559 0.94986 0.92288 0.88367 0.86814 0.89858 0.88133 0.91870 0.93330 0.92880 0.93078 0.90870 0.89810 0.89986 0.93248 0.89337 0.89015 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.55 -32.43 9.11 25.60 0.23 -32.20 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.38 4.97 29.85 0.15 1.53 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 11 C -0.12 -4.25 5.54 30.60 0.17 -4.08 16 12 C 0.13 3.72 5.43 86.38 0.47 4.18 16 13 N -0.60 -14.82 1.44 -820.76 -1.18 -16.00 16 14 C 0.09 1.34 5.69 86.49 0.49 1.83 16 15 C -0.13 -1.66 5.58 30.82 0.17 -1.49 16 16 C -0.13 -2.10 5.28 30.01 0.16 -1.94 16 17 C -0.12 -1.34 4.89 29.91 0.15 -1.19 16 18 C -0.12 -1.13 5.62 31.08 0.17 -0.96 16 19 C -0.11 -1.56 5.65 31.42 0.18 -1.38 16 20 C -0.15 -2.63 5.37 29.96 0.16 -2.47 16 21 C 0.51 14.27 5.20 87.54 0.46 14.73 16 22 O -0.60 -23.67 16.73 -3.03 -0.05 -23.72 16 23 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 2.03 7.42 -2.39 -0.02 2.01 16 31 H 0.10 2.42 7.64 -2.38 -0.02 2.40 16 32 H 0.11 1.23 3.37 -2.39 -0.01 1.22 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 0.81 7.81 -2.39 -0.02 0.80 16 35 H 0.06 0.90 7.86 -2.39 -0.02 0.88 16 36 H 0.05 1.06 3.72 -2.38 -0.01 1.05 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.66 8.12 -2.39 -0.02 0.64 16 39 H 0.07 0.64 8.04 -2.39 -0.02 0.62 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.58 5.09 -2.39 -0.01 0.57 16 42 H 0.05 0.97 6.62 -2.39 -0.02 0.95 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.12 1.41 4.79 -2.39 -0.01 1.40 16 Total: -1.00 -75.72 337.36 5.60 -70.12 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.95 Total: 7.70 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.58 Total: -27.13 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -0.89 Total: -74.50 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.72 5.60 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403944061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.077 kcal (2) G-P(sol) polarization free energy of solvation -75.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds