Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47183 * 239.99845 * 3 2 1 5 5 H 1.48504 * 109.47670 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00110 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.46996 * 299.99880 * 12 11 10 14 14 C 1.52996 * 109.46958 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47280 * 0.02562 * 14 13 12 16 16 C 1.50703 * 109.47443 * 179.97438 * 15 14 13 17 17 O 1.20828 * 120.00113 * 239.99892 * 16 15 14 18 18 O 1.34230 * 119.99629 * 59.99671 * 16 15 14 19 19 C 1.53000 * 109.47194 * 59.99730 * 15 14 13 20 20 C 1.52996 * 109.47536 * 300.00077 * 19 15 14 21 21 C 1.53004 * 109.47227 * 299.99903 * 15 14 13 22 22 C 1.52996 * 109.46911 * 59.99871 * 21 15 14 23 23 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 25 25 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 26 26 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 27 27 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 28 28 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 29 29 H 1.08995 * 109.46960 * 300.00453 * 13 12 11 30 30 H 1.08997 * 109.46669 * 60.00240 * 13 12 11 31 31 H 1.09002 * 109.47037 * 239.99995 * 14 13 12 32 32 H 1.09002 * 109.47320 * 120.00016 * 14 13 12 33 33 H 0.96699 * 116.99636 * 180.02562 * 18 16 15 34 34 H 1.09002 * 109.47042 * 180.02562 * 19 15 14 35 35 H 1.09002 * 109.46868 * 60.00454 * 19 15 14 36 36 H 1.08995 * 109.47485 * 240.00523 * 20 19 15 37 37 H 1.08996 * 109.47010 * 119.99315 * 20 19 15 38 38 H 1.09002 * 109.47439 * 180.02562 * 21 15 14 39 39 H 1.09002 * 109.47073 * 300.00134 * 21 15 14 40 40 H 1.09004 * 109.47161 * 240.00010 * 22 21 15 41 41 H 1.09001 * 109.47247 * 120.00029 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 3.3166 -6.0177 -1.2524 14 6 4.2790 -7.2070 -1.2534 15 6 4.0389 -8.0585 -0.0051 16 6 4.9864 -9.2304 -0.0064 17 8 4.5526 -10.3581 -0.0076 18 8 6.3123 -9.0213 -0.0062 19 6 2.5967 -8.5694 -0.0060 20 6 1.6342 -7.3801 -0.0050 21 6 4.2784 -7.2097 1.2451 22 6 3.3160 -6.0203 1.2461 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8726 -3.6048 0.8877 27 1 2.8713 -3.6039 -0.8922 28 1 0.8740 -4.9838 -0.7836 29 1 2.6886 -6.0582 -2.1423 30 1 3.8866 -5.0886 -1.2519 31 1 5.3065 -6.8430 -1.2532 32 1 4.1081 -7.8121 -2.1438 33 1 6.8801 -9.8040 -0.0074 34 1 2.4255 -9.1756 0.8836 35 1 2.4261 -9.1742 -0.8966 36 1 1.0061 -7.4217 0.8848 37 1 1.0065 -7.4199 -0.8952 38 1 4.1078 -7.8164 2.1345 39 1 5.3059 -6.8456 1.2458 40 1 3.8864 -5.0914 1.2472 41 1 2.6878 -6.0620 2.1359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404294968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -114.438115 kcal Electronic energy + Delta-G solvation = -21188.385324 eV Core-core repulsion = 18066.719235 eV Total energy + Delta-G solvation = -3121.666089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52202 -39.59596 -36.37944 -35.46902 -33.01177 -31.17709 -31.03722 -30.51018 -27.97148 -24.56931 -23.17752 -22.91145 -22.86332 -20.93365 -20.07822 -18.28556 -17.41396 -16.76121 -16.28276 -15.99810 -15.68247 -15.23529 -14.73528 -14.40263 -14.23965 -13.30333 -13.16442 -13.00065 -12.41318 -12.25310 -12.20081 -12.16562 -12.11866 -11.96605 -11.70871 -11.66491 -11.33424 -11.08084 -10.91862 -10.54514 -10.50270 -10.35956 -10.15891 -9.85353 -9.73291 -9.34245 -9.13026 -8.34548 -7.76090 -5.99301 -4.01934 1.99445 2.82158 3.33312 3.37959 3.40004 4.24486 4.35057 4.42357 4.51782 4.89630 4.94279 5.16764 5.21248 5.21847 5.26934 5.28679 5.32312 5.32617 5.35299 5.36706 5.88035 5.89608 5.93896 5.99032 6.10174 6.12687 6.21332 6.22555 6.28417 6.34670 6.38843 6.44025 6.56460 7.01582 7.51224 7.68347 7.73675 7.83794 7.97147 8.09596 8.44189 9.05370 9.61870 11.12078 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039126 B = 0.003885 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.461293 B = 7206.136254 C = 7557.601011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.061 3.939 11 N -0.680 5.680 12 C 0.117 3.883 13 C -0.147 4.147 14 C -0.100 4.100 15 C -0.044 4.044 16 C 0.489 3.511 17 O -0.518 6.518 18 O -0.513 6.513 19 C -0.094 4.094 20 C -0.104 4.104 21 C -0.103 4.103 22 C -0.104 4.104 23 H 0.261 0.739 24 H 0.012 0.988 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.019 0.981 28 H 0.337 0.663 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.406 0.594 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -17.815 -0.643 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.066 4.066 11 N -0.309 5.309 12 C 0.025 3.975 13 C -0.186 4.186 14 C -0.138 4.138 15 C -0.046 4.046 16 C 0.331 3.669 17 O -0.405 6.405 18 O -0.324 6.324 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.141 4.141 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.155 0.845 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.265 0.735 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.780 -17.636 0.052 19.701 hybrid contribution 1.221 0.405 -1.006 1.633 sum 10.001 -17.232 -0.954 19.946 Atomic orbital electron populations 1.69967 1.06028 1.26675 1.50601 1.24994 0.94824 0.99170 0.95320 0.86666 0.79580 0.83201 0.78582 1.20311 1.21288 1.20229 1.21137 0.92902 0.91059 1.50942 0.92869 1.19061 0.94055 0.90480 0.97629 1.22243 0.97212 0.88348 0.98839 1.60743 1.18955 1.01727 1.49496 1.20809 0.91692 0.91568 0.93443 1.22300 0.98695 0.98198 0.99421 1.21510 1.00853 0.96488 0.94936 1.20502 0.93168 0.91545 0.99345 1.23637 0.81612 0.90768 0.70872 1.90699 1.78332 1.25665 1.45849 1.84574 1.18970 1.43470 1.85407 1.21455 0.90823 0.97752 1.03221 1.21548 0.97198 0.92430 1.02992 1.21599 1.00960 0.96689 0.94908 1.21545 0.96990 0.97401 0.98209 0.92953 0.96931 0.95739 0.92037 0.96255 0.84530 0.91690 0.90591 0.90705 0.91748 0.73547 0.91026 0.91212 0.90564 0.91670 0.91497 0.90645 0.90831 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.64 5.23 -27.89 -0.15 0.50 16 10 C 0.06 1.23 4.84 -3.82 -0.02 1.21 16 11 N -0.68 -11.36 6.09 -99.96 -0.61 -11.96 16 12 C 0.12 1.56 0.71 -131.60 -0.09 1.46 16 13 C -0.15 -1.84 4.75 -26.73 -0.13 -1.97 16 14 C -0.10 -1.07 4.92 -26.73 -0.13 -1.20 16 15 C -0.04 -0.48 0.71 -155.66 -0.11 -0.59 16 16 C 0.49 5.39 6.93 36.01 0.25 5.64 16 17 O -0.52 -7.02 16.74 -18.75 -0.31 -7.33 16 18 O -0.51 -4.37 13.23 -39.26 -0.52 -4.89 16 19 C -0.09 -1.04 4.28 -26.73 -0.11 -1.16 16 20 C -0.10 -1.22 5.25 -26.71 -0.14 -1.36 16 21 C -0.10 -1.12 4.92 -26.73 -0.13 -1.25 16 22 C -0.10 -1.34 4.75 -26.76 -0.13 -1.47 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.24 6.31 -51.93 -0.33 0.91 16 27 H 0.02 0.38 6.30 -51.93 -0.33 0.05 16 28 H 0.34 5.51 8.72 -39.29 -0.34 5.17 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.05 6.40 -51.93 -0.33 0.72 16 31 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.41 1.70 9.10 45.56 0.41 2.12 16 34 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.07 1.03 6.41 -51.93 -0.33 0.70 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -31.58 318.92 -8.08 -39.65 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.86 Total: 2.85 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.30 Total: -13.54 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.13 Total: -38.04 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.83 Total: -12.23 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.58 -8.08 -39.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404294968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.785 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds