Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47183 * 239.99845 * 3 2 1 5 5 H 1.48504 * 109.47670 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00110 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.46996 * 299.99880 * 12 11 10 14 14 C 1.52996 * 109.46958 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47280 * 0.02562 * 14 13 12 16 16 C 1.50703 * 109.47443 * 179.97438 * 15 14 13 17 17 O 1.20828 * 120.00113 * 239.99892 * 16 15 14 18 18 O 1.34230 * 119.99629 * 59.99671 * 16 15 14 19 19 C 1.53000 * 109.47194 * 59.99730 * 15 14 13 20 20 C 1.52996 * 109.47536 * 300.00077 * 19 15 14 21 21 C 1.53004 * 109.47227 * 299.99903 * 15 14 13 22 22 C 1.52996 * 109.46911 * 59.99871 * 21 15 14 23 23 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 25 25 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 26 26 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 27 27 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 28 28 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 29 29 H 1.08995 * 109.46960 * 300.00453 * 13 12 11 30 30 H 1.08997 * 109.46669 * 60.00240 * 13 12 11 31 31 H 1.09002 * 109.47037 * 239.99995 * 14 13 12 32 32 H 1.09002 * 109.47320 * 120.00016 * 14 13 12 33 33 H 0.96699 * 116.99636 * 180.02562 * 18 16 15 34 34 H 1.09002 * 109.47042 * 180.02562 * 19 15 14 35 35 H 1.09002 * 109.46868 * 60.00454 * 19 15 14 36 36 H 1.08995 * 109.47485 * 240.00523 * 20 19 15 37 37 H 1.08996 * 109.47010 * 119.99315 * 20 19 15 38 38 H 1.09002 * 109.47439 * 180.02562 * 21 15 14 39 39 H 1.09002 * 109.47073 * 300.00134 * 21 15 14 40 40 H 1.09004 * 109.47161 * 240.00010 * 22 21 15 41 41 H 1.09001 * 109.47247 * 120.00029 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 3.3166 -6.0177 -1.2524 14 6 4.2790 -7.2070 -1.2534 15 6 4.0389 -8.0585 -0.0051 16 6 4.9864 -9.2304 -0.0064 17 8 4.5526 -10.3581 -0.0076 18 8 6.3123 -9.0213 -0.0062 19 6 2.5967 -8.5694 -0.0060 20 6 1.6342 -7.3801 -0.0050 21 6 4.2784 -7.2097 1.2451 22 6 3.3160 -6.0203 1.2461 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8726 -3.6048 0.8877 27 1 2.8713 -3.6039 -0.8922 28 1 0.8740 -4.9838 -0.7836 29 1 2.6886 -6.0582 -2.1423 30 1 3.8866 -5.0886 -1.2519 31 1 5.3065 -6.8430 -1.2532 32 1 4.1081 -7.8121 -2.1438 33 1 6.8801 -9.8040 -0.0074 34 1 2.4255 -9.1756 0.8836 35 1 2.4261 -9.1742 -0.8966 36 1 1.0061 -7.4217 0.8848 37 1 1.0065 -7.4199 -0.8952 38 1 4.1078 -7.8164 2.1345 39 1 5.3059 -6.8456 1.2458 40 1 3.8864 -5.0914 1.2472 41 1 2.6878 -6.0620 2.1359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404294968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -135.585180 kcal Electronic energy + Delta-G solvation = -21189.302330 eV Core-core repulsion = 18066.719235 eV Total energy + Delta-G solvation = -3122.583094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44938 -40.52648 -37.20526 -36.85890 -34.96461 -32.43337 -31.98984 -31.78517 -29.54570 -26.26699 -24.31260 -24.00761 -23.82125 -22.32335 -21.36529 -19.10591 -18.57215 -18.27256 -17.58579 -17.09395 -16.72695 -16.41557 -16.11290 -15.85536 -15.55790 -14.78800 -14.39069 -14.00298 -13.93767 -13.52785 -13.20299 -13.17634 -13.14737 -13.08423 -13.01873 -12.75260 -12.61597 -12.54447 -12.50090 -12.26935 -11.90765 -11.41577 -11.34882 -11.30315 -11.13379 -10.96718 -10.74224 -10.52621 -9.14037 -8.17870 -6.29038 1.15442 1.41753 1.44713 1.52546 2.08053 2.42300 3.15747 3.23423 3.39193 3.49181 3.88122 4.01795 4.17042 4.21686 4.27763 4.34543 4.36082 4.37584 4.39183 4.48543 4.61804 4.70315 4.96495 4.98132 5.01972 5.06824 5.15671 5.18752 5.21306 5.24919 5.29593 5.37796 5.45454 5.50599 5.59496 5.73472 5.84239 6.19913 6.36338 6.62143 6.89002 6.99130 7.40284 8.94074 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039126 B = 0.003885 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.461293 B = 7206.136254 C = 7557.601011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.687 5.687 12 C 0.114 3.886 13 C -0.143 4.143 14 C -0.093 4.093 15 C -0.045 4.045 16 C 0.498 3.502 17 O -0.545 6.545 18 O -0.507 6.507 19 C -0.089 4.089 20 C -0.098 4.098 21 C -0.096 4.096 22 C -0.103 4.103 23 H 0.263 0.737 24 H -0.011 1.011 25 H -0.008 1.008 26 H 0.061 0.939 27 H 0.024 0.976 28 H 0.338 0.662 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.427 0.573 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 -18.435 -0.883 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.316 5.316 12 C 0.023 3.977 13 C -0.182 4.182 14 C -0.132 4.132 15 C -0.046 4.046 16 C 0.341 3.659 17 O -0.436 6.436 18 O -0.320 6.320 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.141 4.141 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.010 0.990 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.288 0.712 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.729 -18.280 -0.188 21.197 hybrid contribution 0.623 0.561 -0.921 1.245 sum 11.352 -17.720 -1.109 21.073 Atomic orbital electron populations 1.70109 1.07839 1.27773 1.51564 1.25956 0.95714 1.03304 0.94718 0.85513 0.78266 0.78131 0.79205 1.19109 1.20964 1.19157 1.21596 0.93518 0.92278 1.50715 0.92126 1.18927 0.94393 0.92487 0.94835 1.21809 0.95635 0.88066 0.98973 1.60650 1.19638 1.01496 1.49807 1.20931 0.91610 0.90802 0.94311 1.22216 0.98736 0.98495 0.98788 1.21461 1.00635 0.95702 0.95368 1.20470 0.93210 0.91671 0.99264 1.23444 0.82265 0.90003 0.70164 1.90701 1.78954 1.26591 1.47305 1.84520 1.18070 1.44808 1.84649 1.21396 0.90767 0.97149 1.03439 1.21485 0.97228 0.91763 1.03109 1.21536 1.00697 0.95803 0.95409 1.21514 0.97089 0.97928 0.97573 0.92825 0.99266 0.98995 0.92104 0.95813 0.84410 0.91544 0.91996 0.89939 0.90726 0.71159 0.90959 0.90900 0.90997 0.91108 0.90599 0.89752 0.92141 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.64 5.23 29.85 0.16 1.80 16 10 C 0.08 3.39 4.84 86.30 0.42 3.81 16 11 N -0.69 -23.10 6.09 -470.16 -2.86 -25.96 16 12 C 0.11 2.97 0.71 3.53 0.00 2.97 16 13 C -0.14 -3.40 4.75 30.60 0.15 -3.25 16 14 C -0.09 -1.80 4.92 30.59 0.15 -1.65 16 15 C -0.04 -0.88 0.71 -52.93 -0.04 -0.91 16 16 C 0.50 9.70 6.93 71.24 0.49 10.19 16 17 O -0.55 -13.63 16.74 21.96 0.37 -13.26 16 18 O -0.51 -7.08 13.23 -51.42 -0.68 -7.76 16 19 C -0.09 -1.81 4.28 30.59 0.13 -1.68 16 20 C -0.10 -2.19 5.25 30.61 0.16 -2.03 16 21 C -0.10 -1.90 4.92 30.59 0.15 -1.74 16 22 C -0.10 -2.58 4.75 30.58 0.15 -2.43 16 23 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 24 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.06 2.47 6.31 -2.39 -0.02 2.45 16 27 H 0.02 0.94 6.30 -2.39 -0.02 0.93 16 28 H 0.34 11.20 8.72 -89.69 -0.78 10.42 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 31 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.43 2.23 9.10 -74.06 -0.67 1.56 16 34 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 40 H 0.06 1.66 6.41 -2.38 -0.02 1.65 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.80 318.92 1.32 -66.48 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.42 Total: 16.15 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 2.61 Total: -24.94 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.58 Total: -82.74 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.31 Total: -21.02 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.80 1.32 -66.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404294968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.107 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds