Wall clock time and date at job start Mon Mar 30 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.46917 * 2 1 4 4 C 1.46895 * 111.00317 * 291.52166 * 3 2 1 5 5 C 1.52998 * 109.47404 * 158.63044 * 4 3 2 6 6 O 1.42898 * 109.46909 * 67.22397 * 5 4 3 7 7 C 1.42904 * 113.99957 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47196 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99985 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00097 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99676 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00088 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47031 * 59.99674 * 12 10 8 14 14 H 1.48497 * 109.47025 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46840 * 299.99701 * 12 10 8 16 16 C 1.46895 * 110.99653 * 167.56414 * 3 2 1 17 17 C 1.50701 * 109.47251 * 293.81734 * 16 3 2 18 18 O 1.34308 * 125.78765 * 270.16047 * 17 16 3 19 19 C 1.34308 * 109.47746 * 180.23798 * 18 17 16 20 20 C 1.34520 * 108.41927 * 359.77437 * 19 18 17 21 21 C 1.34509 * 125.79254 * 90.00227 * 17 16 3 22 22 C 1.50702 * 126.57830 * 0.03484 * 21 17 16 23 23 H 1.08995 * 109.47027 * 65.87350 * 1 2 3 24 24 H 1.09003 * 109.46870 * 185.87403 * 1 2 3 25 25 H 1.08996 * 109.46818 * 305.86950 * 1 2 3 26 26 H 1.08997 * 109.46921 * 240.00059 * 2 1 3 27 27 H 1.08999 * 109.47170 * 120.00559 * 2 1 3 28 28 H 1.09000 * 109.46982 * 278.63417 * 4 3 2 29 29 H 1.09000 * 109.47206 * 38.63094 * 4 3 2 30 30 H 1.08995 * 109.47323 * 187.22245 * 5 4 3 31 31 H 1.09006 * 109.46966 * 307.22424 * 5 4 3 32 32 H 1.08997 * 109.46896 * 299.99911 * 7 6 5 33 33 H 1.08994 * 109.47346 * 59.99656 * 7 6 5 34 34 H 0.97001 * 119.99637 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47078 * 173.81831 * 16 3 2 36 36 H 1.08994 * 109.47425 * 53.81749 * 16 3 2 37 37 H 1.07992 * 125.79225 * 179.75100 * 19 18 17 38 38 H 1.08002 * 126.58158 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47118 * 269.71445 * 22 21 17 40 40 H 1.08994 * 109.47236 * 149.71229 * 22 21 17 41 41 H 1.08999 * 109.46768 * 29.71249 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7209 2.0491 -1.2757 5 6 1.7406 3.5661 -1.0780 6 8 3.0732 3.9910 -0.7856 7 6 3.2027 5.3995 -0.5816 8 6 4.6414 5.7337 -0.2826 9 1 5.3827 4.9489 -0.2511 10 6 5.0111 7.0411 -0.0482 11 7 4.1082 7.9966 -0.0861 12 14 6.7944 7.4553 0.3231 13 1 7.6472 7.0406 -0.8197 14 1 6.9288 8.9189 0.5350 15 1 7.2247 6.7356 1.5487 16 6 3.4578 1.4349 0.2953 17 6 3.6964 0.9733 1.7099 18 8 3.7098 1.7574 2.8002 19 6 3.9576 1.0086 3.8873 20 6 4.1008 -0.2711 3.4983 21 6 3.9292 -0.2943 2.0951 22 6 4.0001 -1.5058 1.2016 23 1 -0.3633 0.4200 -0.9379 24 1 -0.3633 -1.0223 0.1052 25 1 -0.3633 0.6021 0.8328 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.4710 1.7693 -2.0154 29 1 0.7349 1.7408 -1.6236 30 1 1.3946 4.0557 -1.9883 31 1 1.0841 3.8331 -0.2498 32 1 2.8869 5.9274 -1.4814 33 1 2.5766 5.7042 0.2570 34 1 4.3684 8.9165 0.0784 35 1 3.8168 2.4578 0.1815 36 1 3.9933 0.7830 -0.3948 37 1 4.0299 1.3722 4.9016 38 1 4.3075 -1.1182 4.1356 39 1 3.0085 -1.9493 1.1116 40 1 4.6866 -2.2349 1.6318 41 1 4.3564 -1.2092 0.2151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412024962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:54 Heat of formation + Delta-G solvation = -32.779591 kcal Electronic energy + Delta-G solvation = -21017.309778 eV Core-core repulsion = 17899.184668 eV Total energy + Delta-G solvation = -3118.125109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.32791 -38.17645 -36.19552 -33.90898 -32.70231 -31.42534 -30.70032 -28.88631 -27.31265 -26.56531 -24.35203 -22.63234 -22.23345 -21.22199 -20.47844 -19.28360 -16.88635 -16.44372 -16.13354 -15.74349 -15.38082 -14.88209 -14.82865 -14.20110 -14.12817 -13.64518 -13.53718 -13.19817 -13.07114 -12.61993 -12.40009 -12.15171 -12.01693 -11.77911 -11.66119 -11.52295 -11.18512 -11.06439 -10.85003 -10.71376 -10.68391 -10.33182 -9.91781 -9.40584 -9.06895 -8.76302 -8.25069 -8.11015 -8.00966 -6.07374 -4.08815 1.99609 2.74293 3.33332 3.34280 3.36895 3.40807 4.18095 4.37488 4.87498 4.92967 5.03249 5.10850 5.13696 5.24168 5.29277 5.44653 5.48600 5.54005 5.56682 5.63646 5.69757 5.80056 5.87879 5.96955 6.03638 6.05699 6.13185 6.17233 6.26351 6.33392 6.41916 6.57741 6.82942 7.16152 7.24124 7.30159 7.49232 7.53792 7.81756 8.19348 8.61036 9.03666 9.55720 11.04113 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.005608 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.359311 B = 4992.077942 C = 6134.631828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.035 3.965 3 N -0.527 5.527 4 C 0.058 3.942 5 C 0.066 3.934 6 O -0.395 6.395 7 C 0.197 3.803 8 C -0.513 4.513 9 H 0.064 0.936 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.905 3.095 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.115 3.885 17 C 0.024 3.976 18 O -0.157 6.157 19 C -0.043 4.043 20 C -0.216 4.216 21 C -0.197 4.197 22 C -0.080 4.080 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.029 0.971 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.264 0.736 35 H 0.136 0.864 36 H 0.058 0.942 37 H 0.198 0.802 38 H 0.142 0.858 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -17.983 2.359 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 N -0.252 5.252 4 C -0.069 4.069 5 C -0.012 4.012 6 O -0.316 6.316 7 C 0.123 3.877 8 C -0.551 4.551 9 H 0.082 0.918 10 C -0.144 4.144 11 N -0.538 5.538 12 Si 0.733 3.267 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.011 4.011 17 C -0.028 4.028 18 O -0.051 6.051 19 C -0.112 4.112 20 C -0.235 4.235 21 C -0.199 4.199 22 C -0.137 4.137 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.075 0.925 37 H 0.214 0.786 38 H 0.159 0.841 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.597 -17.328 2.738 18.136 hybrid contribution 1.097 -0.072 -0.175 1.113 sum -3.501 -17.400 2.563 17.933 Atomic orbital electron populations 1.21801 0.95216 1.01155 1.02316 1.22398 0.96012 0.89748 1.01070 1.61947 1.14830 1.15518 1.32905 1.22223 1.00736 0.94294 0.89654 1.22290 0.87425 0.92689 0.98778 1.87704 1.24988 1.27576 1.91296 1.20165 0.97443 0.75142 0.94950 1.21000 0.93177 0.92946 1.48008 0.91762 1.24924 0.98173 0.95902 0.95378 1.69956 1.33561 1.00575 1.49666 0.86439 0.84183 0.77088 0.79028 1.20072 1.21173 1.20015 1.20897 0.88402 1.05874 0.85911 1.22224 1.03351 0.88409 0.88820 1.84155 1.68421 1.37903 1.14612 1.23957 1.05562 0.90376 0.91296 1.21582 1.09560 0.97526 0.94875 1.20155 1.10243 0.94992 0.94551 1.20239 1.01485 0.94222 0.97727 0.92870 0.92704 0.91770 0.95257 0.89823 0.93866 0.89894 0.94163 0.93502 0.97861 0.97634 0.92659 0.84613 0.92453 0.78571 0.84060 0.91708 0.91974 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.81 37.16 0.36 -1.24 16 2 C 0.04 0.44 5.04 -3.82 -0.02 0.42 16 3 N -0.53 -8.19 4.40 -236.08 -1.04 -9.23 16 4 C 0.06 0.88 5.39 -3.83 -0.02 0.86 16 5 C 0.07 1.23 6.25 37.16 0.23 1.47 16 6 O -0.40 -9.29 7.50 -35.23 -0.26 -9.55 16 7 C 0.20 5.41 5.69 36.00 0.20 5.62 16 8 C -0.51 -15.11 9.43 -34.44 -0.32 -15.44 16 9 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 12 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.12 1.96 5.08 -4.98 -0.03 1.93 16 17 C 0.02 0.40 6.26 -35.63 -0.22 0.17 16 18 O -0.16 -2.86 10.65 5.68 0.06 -2.80 16 19 C -0.04 -0.61 12.09 29.42 0.36 -0.26 16 20 C -0.22 -2.86 10.87 -39.70 -0.43 -3.29 16 21 C -0.20 -2.81 5.21 -104.74 -0.55 -3.35 16 22 C -0.08 -0.88 9.06 36.01 0.33 -0.55 16 23 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.34 8.10 -51.93 -0.42 -0.09 16 27 H 0.08 1.07 3.93 -51.93 -0.20 0.86 16 28 H 0.04 0.64 7.97 -51.93 -0.41 0.23 16 29 H 0.08 1.03 6.10 -51.93 -0.32 0.72 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.14 2.82 5.18 -51.93 -0.27 2.55 16 36 H 0.06 0.87 7.11 -51.93 -0.37 0.50 16 37 H 0.20 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.67 7.14 -51.93 -0.37 0.30 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -32.06 330.45 -7.16 -39.22 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.41 Total: -1.21 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.20 Total: -12.09 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.30 Total: -35.62 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.20 Total: -12.35 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.06 -7.16 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412024962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.440 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds