Wall clock time and date at job start Mon Mar 30 2020 06:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.46917 * 2 1 4 4 C 1.46895 * 111.00317 * 291.52166 * 3 2 1 5 5 C 1.52998 * 109.47404 * 158.63044 * 4 3 2 6 6 O 1.42898 * 109.46909 * 67.22397 * 5 4 3 7 7 C 1.42904 * 113.99957 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47196 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99985 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00097 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99676 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00088 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47031 * 59.99674 * 12 10 8 14 14 H 1.48497 * 109.47025 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46840 * 299.99701 * 12 10 8 16 16 C 1.46895 * 110.99653 * 167.56414 * 3 2 1 17 17 C 1.50701 * 109.47251 * 293.81734 * 16 3 2 18 18 O 1.34308 * 125.78765 * 270.16047 * 17 16 3 19 19 C 1.34308 * 109.47746 * 180.23798 * 18 17 16 20 20 C 1.34520 * 108.41927 * 359.77437 * 19 18 17 21 21 C 1.34509 * 125.79254 * 90.00227 * 17 16 3 22 22 C 1.50702 * 126.57830 * 0.03484 * 21 17 16 23 23 H 1.08995 * 109.47027 * 65.87350 * 1 2 3 24 24 H 1.09003 * 109.46870 * 185.87403 * 1 2 3 25 25 H 1.08996 * 109.46818 * 305.86950 * 1 2 3 26 26 H 1.08997 * 109.46921 * 240.00059 * 2 1 3 27 27 H 1.08999 * 109.47170 * 120.00559 * 2 1 3 28 28 H 1.09000 * 109.46982 * 278.63417 * 4 3 2 29 29 H 1.09000 * 109.47206 * 38.63094 * 4 3 2 30 30 H 1.08995 * 109.47323 * 187.22245 * 5 4 3 31 31 H 1.09006 * 109.46966 * 307.22424 * 5 4 3 32 32 H 1.08997 * 109.46896 * 299.99911 * 7 6 5 33 33 H 1.08994 * 109.47346 * 59.99656 * 7 6 5 34 34 H 0.97001 * 119.99637 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47078 * 173.81831 * 16 3 2 36 36 H 1.08994 * 109.47425 * 53.81749 * 16 3 2 37 37 H 1.07992 * 125.79225 * 179.75100 * 19 18 17 38 38 H 1.08002 * 126.58158 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47118 * 269.71445 * 22 21 17 40 40 H 1.08994 * 109.47236 * 149.71229 * 22 21 17 41 41 H 1.08999 * 109.46768 * 29.71249 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7209 2.0491 -1.2757 5 6 1.7406 3.5661 -1.0780 6 8 3.0732 3.9910 -0.7856 7 6 3.2027 5.3995 -0.5816 8 6 4.6414 5.7337 -0.2826 9 1 5.3827 4.9489 -0.2511 10 6 5.0111 7.0411 -0.0482 11 7 4.1082 7.9966 -0.0861 12 14 6.7944 7.4553 0.3231 13 1 7.6472 7.0406 -0.8197 14 1 6.9288 8.9189 0.5350 15 1 7.2247 6.7356 1.5487 16 6 3.4578 1.4349 0.2953 17 6 3.6964 0.9733 1.7099 18 8 3.7098 1.7574 2.8002 19 6 3.9576 1.0086 3.8873 20 6 4.1008 -0.2711 3.4983 21 6 3.9292 -0.2943 2.0951 22 6 4.0001 -1.5058 1.2016 23 1 -0.3633 0.4200 -0.9379 24 1 -0.3633 -1.0223 0.1052 25 1 -0.3633 0.6021 0.8328 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.4710 1.7693 -2.0154 29 1 0.7349 1.7408 -1.6236 30 1 1.3946 4.0557 -1.9883 31 1 1.0841 3.8331 -0.2498 32 1 2.8869 5.9274 -1.4814 33 1 2.5766 5.7042 0.2570 34 1 4.3684 8.9165 0.0784 35 1 3.8168 2.4578 0.1815 36 1 3.9933 0.7830 -0.3948 37 1 4.0299 1.3722 4.9016 38 1 4.3075 -1.1182 4.1356 39 1 3.0085 -1.9493 1.1116 40 1 4.6866 -2.2349 1.6318 41 1 4.3564 -1.2092 0.2151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412024962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:53 Heat of formation + Delta-G solvation = -53.738743 kcal Electronic energy + Delta-G solvation = -21018.218635 eV Core-core repulsion = 17899.184668 eV Total energy + Delta-G solvation = -3119.033966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.47933 -39.52851 -37.88337 -35.08788 -34.83713 -32.48049 -31.99858 -30.16014 -29.05752 -27.94396 -25.56823 -24.46296 -23.78840 -22.36720 -21.63616 -20.41974 -18.64301 -18.06533 -17.40208 -17.32978 -16.93480 -16.48381 -16.14461 -15.80030 -15.41108 -15.01669 -14.81790 -14.63530 -14.04445 -13.84954 -13.56930 -13.46423 -13.35034 -13.12040 -13.04780 -12.77002 -12.70810 -12.61973 -12.40478 -12.31047 -12.19175 -11.76599 -11.52296 -11.21686 -10.83434 -10.46922 -10.16773 -9.38826 -9.15172 -8.31803 -6.43621 0.84354 1.37609 1.42561 1.50737 1.69567 2.24632 2.33686 3.01965 3.02195 3.21900 3.84497 4.01320 4.08907 4.10273 4.21007 4.26834 4.33905 4.46810 4.58074 4.61465 4.67314 4.68524 4.80157 4.80497 4.86730 4.91051 4.97335 5.05057 5.12519 5.17303 5.20141 5.21594 5.37983 5.40026 5.54232 5.77010 5.97005 6.04684 6.18996 6.39767 6.54630 6.83195 7.27887 8.80467 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.005608 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.359311 B = 4992.077942 C = 6134.631828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.037 3.963 3 N -0.544 5.544 4 C 0.068 3.932 5 C 0.057 3.943 6 O -0.399 6.399 7 C 0.213 3.787 8 C -0.544 4.544 9 H 0.060 0.940 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.979 3.021 13 H -0.263 1.263 14 H -0.274 1.274 15 H -0.269 1.269 16 C 0.124 3.876 17 C -0.019 4.019 18 O -0.200 6.200 19 C -0.054 4.054 20 C -0.216 4.216 21 C -0.185 4.185 22 C -0.080 4.080 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.035 0.965 32 H -0.014 1.014 33 H -0.022 1.022 34 H 0.270 0.730 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.227 0.773 38 H 0.173 0.827 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 -20.240 2.564 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 N -0.269 5.269 4 C -0.059 4.059 5 C -0.021 4.021 6 O -0.320 6.320 7 C 0.138 3.862 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.802 3.198 13 H -0.188 1.188 14 H -0.198 1.198 15 H -0.194 1.194 16 C -0.003 4.003 17 C -0.069 4.069 18 O -0.096 6.096 19 C -0.121 4.121 20 C -0.235 4.235 21 C -0.187 4.187 22 C -0.136 4.136 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.004 0.996 33 H -0.005 1.005 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.244 0.756 38 H 0.191 0.809 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.024 -19.616 2.932 20.238 hybrid contribution 0.827 0.564 -0.198 1.020 sum -3.197 -19.052 2.734 19.511 Atomic orbital electron populations 1.21789 0.93891 1.02411 1.02017 1.22454 0.96968 0.87818 1.01708 1.61908 1.14165 1.17827 1.33048 1.22185 1.02682 0.91262 0.89804 1.22623 0.84997 0.95735 0.98697 1.87743 1.27956 1.24910 1.91353 1.19743 0.96332 0.77300 0.92868 1.21320 0.93959 0.93589 1.49280 0.92217 1.25926 1.03328 0.95413 0.94451 1.70069 1.36002 1.01140 1.49780 0.85298 0.77950 0.77358 0.79203 1.18798 1.19841 1.19396 1.20639 0.89362 1.03269 0.87049 1.22356 1.06495 0.89535 0.88554 1.84108 1.69681 1.39806 1.16022 1.24737 1.04872 0.90884 0.91653 1.21996 1.08646 0.98089 0.94798 1.20583 1.07686 0.94892 0.95537 1.20344 1.02934 0.93185 0.97157 0.92058 0.90349 0.93481 0.93552 0.90075 0.93478 0.86586 0.93049 0.94658 0.99610 1.00460 0.92101 0.89222 0.91194 0.75638 0.80908 0.90104 0.90119 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.81 71.98 0.71 -2.08 16 2 C 0.04 0.86 5.04 86.31 0.44 1.29 16 3 N -0.54 -16.81 4.40 -900.82 -3.96 -20.77 16 4 C 0.07 2.00 5.39 86.30 0.47 2.47 16 5 C 0.06 2.19 6.25 71.98 0.45 2.64 16 6 O -0.40 -19.77 7.50 -148.98 -1.12 -20.88 16 7 C 0.21 12.33 5.69 71.24 0.41 12.74 16 8 C -0.54 -33.22 9.43 25.60 0.24 -32.98 16 9 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 10 C 0.01 0.43 5.46 84.66 0.46 0.89 16 11 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 12 Si 0.98 45.58 29.54 68.60 2.03 47.60 16 13 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 16 C 0.12 4.30 5.08 85.56 0.43 4.74 16 17 C -0.02 -0.65 6.26 24.83 0.16 -0.50 16 18 O -0.20 -7.54 10.65 -2.57 -0.03 -7.57 16 19 C -0.05 -1.50 12.09 66.97 0.81 -0.69 16 20 C -0.22 -5.30 10.87 22.19 0.24 -5.06 16 21 C -0.18 -5.00 5.21 -19.94 -0.10 -5.10 16 22 C -0.08 -1.54 9.06 71.24 0.65 -0.89 16 23 H 0.06 1.08 6.57 -2.39 -0.02 1.06 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 27 H 0.08 1.91 3.93 -2.39 -0.01 1.90 16 28 H 0.05 1.36 7.97 -2.39 -0.02 1.34 16 29 H 0.12 2.64 6.10 -2.39 -0.01 2.63 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.09 3.97 5.18 -2.39 -0.01 3.96 16 36 H 0.07 2.14 7.11 -2.39 -0.02 2.12 16 37 H 0.23 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 39 H 0.08 1.32 6.78 -2.39 -0.02 1.31 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.20 7.14 -2.39 -0.02 1.19 16 Total: -1.00 -72.27 330.45 3.56 -68.71 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.00 Total: 12.50 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 5.35 Total: -22.54 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -3.68 Total: -77.83 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.14 Total: -28.46 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.27 3.56 -68.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412024962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.975 kcal (2) G-P(sol) polarization free energy of solvation -72.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds