Wall clock time and date at job start Mon Mar 30 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99832 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47121 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47264 * 65.00078 * 12 11 10 14 14 C 1.48530 * 111.00180 * 52.59978 * 13 12 11 15 15 C 1.54934 * 103.22839 * 159.72488 * 14 13 12 16 16 C 1.54602 * 102.91920 * 322.58822 * 15 14 13 17 17 H 1.09001 * 110.38858 * 262.99281 * 16 15 14 18 18 C 1.53001 * 110.30961 * 140.87283 * 16 15 14 19 19 C 1.54265 * 110.03599 * 181.44844 * 18 16 15 20 20 C 1.54885 * 104.19735 * 217.10463 * 19 18 16 21 21 C 1.54895 * 102.74591 * 37.94334 * 20 19 18 22 22 C 1.53874 * 110.03021 * 64.27909 * 18 16 15 23 23 C 1.47896 * 111.00108 * 170.00136 * 13 12 11 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 1.09001 * 109.47258 * 299.99776 * 11 10 9 28 28 H 1.08995 * 109.47535 * 59.99536 * 11 10 9 29 29 H 1.09005 * 109.46944 * 184.99583 * 12 11 10 30 30 H 1.08993 * 109.47325 * 304.99454 * 12 11 10 31 31 H 1.08998 * 110.66862 * 278.15998 * 14 13 12 32 32 H 1.09001 * 110.66552 * 41.28834 * 14 13 12 33 33 H 1.08995 * 110.72837 * 204.22764 * 15 14 13 34 34 H 1.09001 * 110.87705 * 81.01306 * 15 14 13 35 35 H 1.09000 * 110.01537 * 302.89727 * 18 16 15 36 36 H 1.08996 * 110.48067 * 335.78769 * 19 18 16 37 37 H 1.09000 * 110.48387 * 98.42219 * 19 18 16 38 38 H 1.08997 * 110.75592 * 279.62676 * 20 19 18 39 39 H 1.08997 * 110.91315 * 156.32856 * 20 19 18 40 40 H 1.09008 * 110.47935 * 203.37607 * 21 20 19 41 41 H 1.08997 * 110.48750 * 80.74005 * 21 20 19 42 42 H 1.09000 * 110.03484 * 238.56751 * 22 18 16 43 43 H 1.09000 * 110.03624 * 0.02562 * 22 18 16 44 44 H 1.08998 * 109.91742 * 333.50528 * 23 13 12 45 45 H 1.09001 * 109.91865 * 94.60200 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9880 -2.5413 -0.0001 11 6 5.4125 -2.6540 0.0010 12 6 5.8070 -4.1323 0.0015 13 7 5.3687 -4.7565 -1.2541 14 6 5.8557 -3.9887 -2.4286 15 6 5.7772 -5.0190 -3.5831 16 6 6.1991 -6.3389 -2.8976 17 1 7.2571 -6.5356 -3.0710 18 6 5.3516 -7.5019 -3.4175 19 6 5.7530 -8.8090 -2.7033 20 6 5.6490 -9.8917 -3.8060 21 6 6.1742 -9.1522 -5.0616 22 6 5.6194 -7.7200 -4.9170 23 6 5.9360 -6.1148 -1.3970 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 5.8160 -2.1702 -0.8885 28 1 5.8146 -2.1708 0.8914 29 1 6.8898 -4.2193 0.0918 30 1 5.3307 -4.6352 0.8429 31 1 5.2052 -3.1371 -2.6281 32 1 6.8838 -3.6610 -2.2746 33 1 6.4733 -4.7587 -4.3804 34 1 4.7606 -5.0928 -3.9693 35 1 4.2940 -7.2953 -3.2533 36 1 6.7748 -8.7414 -2.3301 37 1 5.0620 -9.0264 -1.8888 38 1 4.6137 -10.2027 -3.9456 39 1 6.2798 -10.7488 -3.5705 40 1 5.7905 -9.6203 -5.9683 41 1 7.2641 -9.1402 -5.0693 42 1 4.6916 -7.6204 -5.4803 43 1 6.3534 -6.9978 -5.2742 44 1 6.8708 -6.1872 -0.8412 45 1 5.2260 -6.8545 -1.0269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420960181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:47 Heat of formation + Delta-G solvation = -62.386119 kcal Electronic energy + Delta-G solvation = -20746.356330 eV Core-core repulsion = 17762.780480 eV Total energy + Delta-G solvation = -2983.575850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75697 -37.77833 -36.46109 -33.05516 -32.35187 -29.82318 -29.24173 -28.46270 -27.38057 -25.95037 -22.78088 -21.79234 -21.17683 -20.90455 -20.01727 -19.45335 -16.82789 -16.23874 -16.03640 -15.64886 -15.55093 -14.76943 -14.53320 -14.21639 -13.87307 -13.50847 -13.23282 -13.01124 -12.88986 -12.52928 -12.18639 -11.90753 -11.87058 -11.66001 -11.32085 -11.21761 -11.07550 -10.92699 -10.86220 -10.84143 -10.70317 -10.61019 -10.38661 -10.32012 -10.20264 -9.82849 -9.12102 -8.78432 -8.40447 -8.12397 -6.06862 -4.05109 3.26905 3.33720 3.35376 4.15482 4.33833 4.39067 4.44381 4.50893 4.67796 4.79673 4.89524 4.94634 5.24246 5.27917 5.33905 5.38138 5.41019 5.42836 5.49096 5.54058 5.57170 5.58910 5.65859 5.69547 5.74880 5.78978 5.88670 5.90429 5.93172 5.95269 6.04446 6.12168 6.18552 6.21418 6.26481 6.29799 6.39731 6.64492 7.04545 7.12190 7.26781 7.65181 8.10139 8.73639 9.06861 9.52886 11.06369 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.003406 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.388130 B = 8218.468946 C = 8468.960706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.364 6.364 11 C 0.058 3.942 12 C 0.053 3.947 13 N -0.500 5.500 14 C 0.034 3.966 15 C -0.118 4.118 16 C -0.088 4.088 17 H 0.070 0.930 18 C -0.082 4.082 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.121 4.121 23 C 0.039 3.961 24 H 0.266 0.734 25 H 0.000 1.000 26 H -0.005 1.005 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.800 -15.881 -8.024 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.283 6.283 11 C -0.020 4.020 12 C -0.076 4.076 13 N -0.224 5.224 14 C -0.094 4.094 15 C -0.156 4.156 16 C -0.107 4.107 17 H 0.088 0.912 18 C -0.101 4.101 19 C -0.158 4.158 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.089 4.089 24 H 0.076 0.924 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.934 -15.917 -7.988 23.897 hybrid contribution 1.498 1.304 0.115 1.989 sum 17.432 -14.614 -7.873 24.071 Atomic orbital electron populations 1.69880 1.06030 1.26968 1.50647 1.24771 0.94793 0.98678 0.94798 0.86860 0.80340 0.83883 0.78690 1.20009 1.20825 1.19181 1.20903 0.88298 0.95309 1.50719 0.89876 1.20585 0.96228 0.79945 0.94032 1.88027 1.16679 1.28703 1.94865 1.22391 0.85854 0.94690 0.99022 1.22314 0.96686 0.95037 0.93516 1.64773 1.54988 1.01258 1.01410 1.23244 0.98073 0.97612 0.90425 1.22562 1.02207 0.93795 0.97012 1.22109 0.98995 0.95029 0.94580 0.91185 1.21846 1.00153 0.93801 0.94262 1.22447 1.01339 0.94289 0.97714 1.22495 1.01025 0.97590 0.95252 1.22362 1.00222 0.95762 0.97896 1.22217 1.00960 0.96503 0.96165 1.22988 0.97889 0.92505 0.95545 0.92441 0.98206 0.98710 0.94382 0.94195 0.94296 0.89866 0.89411 0.94478 0.91570 0.90351 0.90318 0.91746 0.91604 0.91580 0.91953 0.92041 0.91979 0.91872 0.91748 0.94508 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -15.68 9.99 -34.44 -0.34 -16.02 16 8 H 0.08 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.17 4.38 4.76 36.01 0.17 4.55 16 10 O -0.36 -8.79 10.27 -35.23 -0.36 -9.15 16 11 C 0.06 1.06 5.76 37.16 0.21 1.28 16 12 C 0.05 0.81 5.41 -3.82 -0.02 0.79 16 13 N -0.50 -7.75 5.34 -230.46 -1.23 -8.98 16 14 C 0.03 0.48 5.09 -1.90 -0.01 0.47 16 15 C -0.12 -1.37 5.82 -24.87 -0.14 -1.52 16 16 C -0.09 -0.92 2.22 -89.26 -0.20 -1.12 16 17 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.08 -0.80 2.20 -89.50 -0.20 -1.00 16 19 C -0.12 -1.04 5.48 -25.07 -0.14 -1.18 16 20 C -0.13 -0.98 6.91 -24.74 -0.17 -1.15 16 21 C -0.12 -0.96 6.83 -25.07 -0.17 -1.13 16 22 C -0.12 -1.05 6.10 -25.61 -0.16 -1.21 16 23 C 0.04 0.47 5.99 -2.76 -0.02 0.46 16 24 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 26 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 27 H 0.04 0.66 6.52 -51.93 -0.34 0.32 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.50 7.81 -51.93 -0.41 0.09 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.09 1.44 7.56 -51.93 -0.39 1.04 16 32 H 0.04 0.48 8.01 -51.93 -0.42 0.06 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.54 7.85 -51.93 -0.41 0.13 16 37 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.55 7.31 -51.93 -0.38 0.17 16 44 H 0.04 0.41 7.57 -51.93 -0.39 0.02 16 45 H 0.08 0.99 7.18 -51.93 -0.37 0.62 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -32.15 344.10 -10.10 -42.25 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -8.52 Total: -4.27 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.28 Total: -14.76 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.46 Total: -36.34 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.36 Total: -9.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.15 -10.10 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420960181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.141 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds