Wall clock time and date at job start Mon Mar 30 2020 07:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99832 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47121 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47264 * 65.00078 * 12 11 10 14 14 C 1.48530 * 111.00180 * 52.59978 * 13 12 11 15 15 C 1.54934 * 103.22839 * 159.72488 * 14 13 12 16 16 C 1.54602 * 102.91920 * 322.58822 * 15 14 13 17 17 H 1.09001 * 110.38858 * 262.99281 * 16 15 14 18 18 C 1.53001 * 110.30961 * 140.87283 * 16 15 14 19 19 C 1.54265 * 110.03599 * 181.44844 * 18 16 15 20 20 C 1.54885 * 104.19735 * 217.10463 * 19 18 16 21 21 C 1.54895 * 102.74591 * 37.94334 * 20 19 18 22 22 C 1.53874 * 110.03021 * 64.27909 * 18 16 15 23 23 C 1.47896 * 111.00108 * 170.00136 * 13 12 11 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 1.09001 * 109.47258 * 299.99776 * 11 10 9 28 28 H 1.08995 * 109.47535 * 59.99536 * 11 10 9 29 29 H 1.09005 * 109.46944 * 184.99583 * 12 11 10 30 30 H 1.08993 * 109.47325 * 304.99454 * 12 11 10 31 31 H 1.08998 * 110.66862 * 278.15998 * 14 13 12 32 32 H 1.09001 * 110.66552 * 41.28834 * 14 13 12 33 33 H 1.08995 * 110.72837 * 204.22764 * 15 14 13 34 34 H 1.09001 * 110.87705 * 81.01306 * 15 14 13 35 35 H 1.09000 * 110.01537 * 302.89727 * 18 16 15 36 36 H 1.08996 * 110.48067 * 335.78769 * 19 18 16 37 37 H 1.09000 * 110.48387 * 98.42219 * 19 18 16 38 38 H 1.08997 * 110.75592 * 279.62676 * 20 19 18 39 39 H 1.08997 * 110.91315 * 156.32856 * 20 19 18 40 40 H 1.09008 * 110.47935 * 203.37607 * 21 20 19 41 41 H 1.08997 * 110.48750 * 80.74005 * 21 20 19 42 42 H 1.09000 * 110.03484 * 238.56751 * 22 18 16 43 43 H 1.09000 * 110.03624 * 0.02562 * 22 18 16 44 44 H 1.08998 * 109.91742 * 333.50528 * 23 13 12 45 45 H 1.09001 * 109.91865 * 94.60200 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9880 -2.5413 -0.0001 11 6 5.4125 -2.6540 0.0010 12 6 5.8070 -4.1323 0.0015 13 7 5.3687 -4.7565 -1.2541 14 6 5.8557 -3.9887 -2.4286 15 6 5.7772 -5.0190 -3.5831 16 6 6.1991 -6.3389 -2.8976 17 1 7.2571 -6.5356 -3.0710 18 6 5.3516 -7.5019 -3.4175 19 6 5.7530 -8.8090 -2.7033 20 6 5.6490 -9.8917 -3.8060 21 6 6.1742 -9.1522 -5.0616 22 6 5.6194 -7.7200 -4.9170 23 6 5.9360 -6.1148 -1.3970 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 5.8160 -2.1702 -0.8885 28 1 5.8146 -2.1708 0.8914 29 1 6.8898 -4.2193 0.0918 30 1 5.3307 -4.6352 0.8429 31 1 5.2052 -3.1371 -2.6281 32 1 6.8838 -3.6610 -2.2746 33 1 6.4733 -4.7587 -4.3804 34 1 4.7606 -5.0928 -3.9693 35 1 4.2940 -7.2953 -3.2533 36 1 6.7748 -8.7414 -2.3301 37 1 5.0620 -9.0264 -1.8888 38 1 4.6137 -10.2027 -3.9456 39 1 6.2798 -10.7488 -3.5705 40 1 5.7905 -9.6203 -5.9683 41 1 7.2641 -9.1402 -5.0693 42 1 4.6916 -7.6204 -5.4803 43 1 6.3534 -6.9978 -5.2742 44 1 6.8708 -6.1872 -0.8412 45 1 5.2260 -6.8545 -1.0269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420960181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:46 Heat of formation + Delta-G solvation = -83.329873 kcal Electronic energy + Delta-G solvation = -20747.264520 eV Core-core repulsion = 17762.780480 eV Total energy + Delta-G solvation = -2984.484040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69894 -38.95496 -37.89338 -34.94819 -33.81761 -30.82871 -30.58867 -29.51412 -28.88784 -26.95062 -24.04557 -23.88792 -22.03400 -21.80737 -20.96784 -20.25610 -19.04262 -17.53276 -17.31482 -16.87569 -16.52675 -16.37157 -15.86503 -15.54897 -15.16114 -14.70428 -14.45349 -14.15865 -14.06020 -13.92100 -13.41559 -13.25245 -13.11549 -12.87990 -12.73307 -12.54311 -12.20942 -11.95536 -11.87383 -11.83819 -11.79217 -11.73317 -11.46736 -11.37812 -11.29699 -11.23407 -11.06941 -10.91997 -10.31637 -9.21499 -8.37501 -6.45384 1.31685 1.35496 1.46421 2.28874 2.94630 3.00456 3.18573 3.55453 3.65330 3.78436 3.92007 3.96431 4.15989 4.26045 4.28919 4.34475 4.44574 4.51957 4.58671 4.61502 4.62288 4.67754 4.72815 4.77425 4.81193 4.87831 4.88952 4.92482 5.01060 5.03981 5.04412 5.11504 5.13965 5.19712 5.28316 5.40842 5.43670 5.44582 5.52737 5.59925 5.93251 6.07528 6.18617 6.59023 6.79162 7.19234 8.80041 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.003406 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.388130 B = 8218.468946 C = 8468.960706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.544 4.544 8 H 0.026 0.974 9 C 0.180 3.820 10 O -0.394 6.394 11 C 0.050 3.950 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.034 3.966 15 C -0.113 4.113 16 C -0.078 4.078 17 H 0.091 0.909 18 C -0.081 4.081 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.120 4.120 23 C 0.040 3.960 24 H 0.273 0.727 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.097 -15.379 -8.471 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.582 4.582 8 H 0.045 0.955 9 C 0.104 3.896 10 O -0.314 6.314 11 C -0.027 4.027 12 C -0.070 4.070 13 N -0.261 5.261 14 C -0.093 4.093 15 C -0.151 4.151 16 C -0.097 4.097 17 H 0.109 0.891 18 C -0.100 4.100 19 C -0.156 4.156 20 C -0.163 4.163 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.087 4.087 24 H 0.082 0.918 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.243 -15.447 -8.435 26.077 hybrid contribution 0.394 1.039 0.264 1.142 sum 19.636 -14.408 -8.171 25.689 Atomic orbital electron populations 1.70041 1.08294 1.28783 1.51148 1.25878 0.95840 1.03479 0.93445 0.85571 0.79354 0.77324 0.79834 1.18245 1.19713 1.17002 1.21160 0.91049 0.93736 1.52253 0.95526 1.20281 0.93258 0.81340 0.94713 1.87980 1.20727 1.27556 1.95104 1.22750 0.82518 0.97183 1.00271 1.22275 0.98515 0.92929 0.93315 1.64687 1.56719 1.02904 1.01839 1.23192 0.98144 0.97116 0.90894 1.22533 1.01821 0.93895 0.96895 1.22076 1.00100 0.94414 0.93133 0.89117 1.21793 0.98535 0.94300 0.95393 1.22429 1.01574 0.93893 0.97705 1.22503 1.01084 0.97731 0.95000 1.22358 1.00741 0.94790 0.98014 1.22203 1.00914 0.97583 0.95065 1.23001 0.98181 0.90509 0.97014 0.91783 0.97447 0.97259 0.93373 0.92412 0.90770 0.90884 0.92633 0.92564 0.89295 0.92284 0.92958 0.90809 0.92366 0.92100 0.90732 0.91436 0.91015 0.92591 0.91138 0.92771 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.81 13.96 21.45 0.30 -60.51 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.96 44.33 27.47 68.60 1.88 46.21 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 7 C -0.54 -34.45 9.99 25.60 0.26 -34.19 16 8 H 0.03 1.91 8.06 -2.92 -0.02 1.88 16 9 C 0.18 9.40 4.76 71.24 0.34 9.74 16 10 O -0.39 -19.33 10.27 -148.98 -1.53 -20.86 16 11 C 0.05 1.75 5.76 71.98 0.41 2.16 16 12 C 0.06 1.69 5.41 86.30 0.47 2.15 16 13 N -0.54 -16.39 5.34 -883.04 -4.72 -21.11 16 14 C 0.03 0.93 5.09 86.65 0.44 1.37 16 15 C -0.11 -2.53 5.82 31.80 0.18 -2.35 16 16 C -0.08 -1.51 2.22 -9.91 -0.02 -1.53 16 17 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 18 C -0.08 -1.54 2.20 -10.07 -0.02 -1.56 16 19 C -0.12 -1.91 5.48 31.67 0.17 -1.73 16 20 C -0.13 -1.76 6.91 31.89 0.22 -1.54 16 21 C -0.12 -1.62 6.83 31.67 0.22 -1.41 16 22 C -0.12 -1.94 6.10 31.32 0.19 -1.74 16 23 C 0.04 0.94 5.99 86.45 0.52 1.46 16 24 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 25 H 0.01 0.39 7.20 -2.39 -0.02 0.38 16 26 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 27 H 0.05 1.59 6.52 -2.39 -0.02 1.58 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.65 7.81 -2.38 -0.02 1.64 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.85 7.56 -2.39 -0.02 1.84 16 32 H 0.06 1.31 8.01 -2.39 -0.02 1.29 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.53 7.86 -2.39 -0.02 1.51 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.06 7.85 -2.39 -0.02 1.04 16 37 H 0.06 1.01 8.07 -2.39 -0.02 1.00 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.05 7.31 -2.39 -0.02 1.03 16 44 H 0.05 1.07 7.57 -2.39 -0.02 1.05 16 45 H 0.07 1.73 7.18 -2.39 -0.02 1.72 16 Total: -1.00 -72.43 344.10 0.63 -71.80 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.86 Total: 12.49 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 3.84 Total: -28.02 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -4.42 Total: -81.61 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -1.53 Total: -20.86 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -72.43 0.63 -71.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420960181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.531 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds