Wall clock time and date at job start Mon Mar 30 2020 06:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47320 * 2 1 4 4 N 1.31126 * 126.55484 * 90.01431 * 3 2 1 5 5 C 1.34492 * 105.61910 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.29014 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47379 * 300.05292 * 6 5 4 8 8 C 1.53002 * 109.46901 * 60.05290 * 6 5 4 9 9 N 1.46896 * 109.47124 * 180.02562 * 6 5 4 10 10 C 1.46909 * 110.99872 * 180.02562 * 9 6 5 11 11 C 1.53002 * 109.46888 * 180.02562 * 10 9 6 12 12 C 1.53004 * 109.46761 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46645 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99966 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99329 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99635 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00468 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46621 * 90.00188 * 17 15 13 19 19 H 1.48494 * 109.47024 * 210.00071 * 17 15 13 20 20 H 1.48504 * 109.46846 * 330.00453 * 17 15 13 21 21 N 1.29948 * 107.42516 * 0.02562 * 5 4 3 22 22 O 1.21303 * 110.24669 * 359.97438 * 21 5 4 23 23 H 1.09000 * 109.47216 * 300.00452 * 1 2 3 24 24 H 1.08999 * 109.46926 * 59.99925 * 1 2 3 25 25 H 1.08997 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46779 * 239.99714 * 2 1 3 27 27 H 1.08999 * 109.46926 * 120.00075 * 2 1 3 28 28 H 1.09007 * 109.47213 * 59.99497 * 7 6 5 29 29 H 1.08994 * 109.47308 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47053 * 299.99969 * 7 6 5 31 31 H 1.08999 * 109.47193 * 60.00196 * 8 6 5 32 32 H 1.09004 * 109.47253 * 180.02562 * 8 6 5 33 33 H 1.09002 * 109.47453 * 299.99828 * 8 6 5 34 34 H 1.00900 * 111.00585 * 303.95488 * 9 6 5 35 35 H 1.09000 * 109.46929 * 299.99978 * 10 9 6 36 36 H 1.08997 * 109.47070 * 60.00678 * 10 9 6 37 37 H 1.08992 * 109.47276 * 299.99898 * 11 10 9 38 38 H 1.09003 * 109.47278 * 60.00069 * 11 10 9 39 39 H 1.09000 * 109.46997 * 299.99698 * 12 11 10 40 40 H 1.08997 * 109.47130 * 60.00476 * 12 11 10 41 41 H 0.97003 * 119.99893 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2930 2.1569 1.0533 5 6 2.7122 3.3411 0.5727 6 6 3.1345 4.5357 1.3885 7 6 1.9697 4.9880 2.2715 8 6 4.3255 4.1557 2.2706 9 7 3.5217 5.6307 0.4891 10 6 3.9409 6.8147 1.2512 11 6 4.3350 7.9314 0.2824 12 6 4.7710 9.1647 1.0761 13 6 5.1587 10.2649 0.1219 14 1 5.1003 10.1007 -0.9439 15 6 5.5888 11.4806 0.6097 16 7 5.9276 12.4406 -0.2230 17 14 5.6903 11.7643 2.4532 18 1 7.0373 11.3729 2.9407 19 1 5.4559 13.2010 2.7466 20 1 4.6585 10.9445 3.1378 21 7 2.6851 3.2662 -0.7243 22 8 2.2977 2.1711 -1.0736 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6828 4.1752 2.9389 29 1 2.2753 5.8517 2.8618 30 1 1.1213 5.2587 1.6431 31 1 5.1553 3.8335 1.6416 32 1 4.6307 5.0196 2.8611 33 1 4.0387 3.3430 2.9380 34 1 4.2463 5.3362 -0.1483 35 1 3.1167 7.1531 1.8792 36 1 4.7948 6.5593 1.8786 37 1 5.1590 7.5933 -0.3459 38 1 3.4809 8.1867 -0.3448 39 1 3.9467 9.5027 1.7041 40 1 5.6251 8.9098 1.7035 41 1 6.2298 13.2960 0.1202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441228623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:10 Heat of formation + Delta-G solvation = 50.901619 kcal Electronic energy + Delta-G solvation = -20182.537399 eV Core-core repulsion = 17100.333730 eV Total energy + Delta-G solvation = -3082.203669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.69913 -38.56895 -36.00663 -34.88216 -33.78578 -32.08057 -31.05236 -29.93791 -27.49510 -26.57983 -25.12861 -24.72479 -22.66840 -21.90083 -20.12636 -19.64373 -18.19576 -17.48704 -16.70185 -16.05580 -15.47660 -15.03349 -14.74349 -14.62445 -14.12929 -13.95450 -13.35514 -13.24347 -12.71781 -12.70394 -12.60305 -12.29912 -12.11375 -11.88572 -11.77014 -11.67553 -11.63154 -11.46561 -11.27963 -11.10521 -10.85955 -10.66024 -10.00128 -9.92585 -9.71865 -9.58109 -9.14982 -8.51057 -8.31294 -6.01161 -3.98835 1.05285 2.12344 2.64977 3.31066 3.32029 3.39333 3.43023 3.83488 4.22245 4.47486 4.56395 4.59841 4.67947 4.82967 4.88729 5.13624 5.26011 5.32474 5.37112 5.40562 5.49098 5.54428 5.60040 5.67370 5.71179 5.73547 5.77053 5.88221 5.99927 6.12063 6.22584 6.55366 6.59334 6.92554 7.12337 7.36724 7.42265 7.50819 7.83008 8.12502 8.58291 9.04713 9.61276 11.12474 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.045489 B = 0.003177 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.383573 B = 8810.066646 C = 9124.308768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C 0.168 3.832 4 N -0.476 5.476 5 C 0.184 3.816 6 C 0.202 3.798 7 C -0.135 4.135 8 C -0.177 4.177 9 N -0.675 5.675 10 C 0.053 3.947 11 C -0.099 4.099 12 C -0.012 4.012 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.265 1.265 21 N -0.360 5.360 22 O 0.076 5.924 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.345 0.655 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.009 0.991 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -27.316 4.164 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 C -0.053 4.053 4 N -0.209 5.209 5 C -0.090 4.090 6 C 0.109 3.891 7 C -0.193 4.193 8 C -0.237 4.237 9 N -0.306 5.306 10 C -0.075 4.075 11 C -0.137 4.137 12 C -0.050 4.050 13 C -0.556 4.556 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 N -0.065 5.065 22 O 0.016 5.984 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.027 0.973 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.759 -26.124 3.964 28.168 hybrid contribution 1.010 -0.111 1.124 1.515 sum -8.749 -26.236 5.088 28.120 Atomic orbital electron populations 1.21793 0.92572 1.03332 1.03288 1.20151 0.97201 0.83545 1.05765 1.28853 0.96857 0.98550 0.81027 1.71767 1.17946 1.02313 1.28915 1.25650 1.00081 0.95163 0.88088 1.19080 0.95836 0.84652 0.89564 1.21856 0.96831 1.01825 0.98787 1.22519 0.97515 1.03024 1.00610 1.60584 1.46645 1.04577 1.18810 1.22304 0.98711 0.89824 0.96617 1.21442 1.00608 0.94039 0.97601 1.19539 0.95752 0.93480 0.96212 1.21153 1.43672 0.96169 0.94625 0.91024 1.25050 0.94839 0.96014 0.97744 1.69924 1.45495 1.04515 1.34459 0.86762 0.78824 0.77242 0.86347 1.20394 1.21417 1.19002 1.74735 1.17349 0.98839 1.15610 1.85341 1.59562 1.17648 1.35800 0.91673 0.91787 0.90521 0.88091 0.87427 0.91535 0.90783 0.91703 0.92589 0.90457 0.91174 0.83646 0.90818 0.95013 0.93020 0.91855 0.96583 0.97272 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.29 16 2 C -0.03 -0.13 6.56 -27.88 -0.18 -0.32 16 3 C 0.17 1.66 7.77 -13.06 -0.10 1.56 16 4 N -0.48 -5.83 11.55 -9.87 -0.11 -5.94 16 5 C 0.18 2.56 6.47 -156.37 -1.01 1.55 16 6 C 0.20 2.73 0.93 -132.75 -0.12 2.60 16 7 C -0.13 -1.68 8.22 37.16 0.31 -1.38 16 8 C -0.18 -2.12 8.21 37.16 0.31 -1.82 16 9 N -0.67 -10.41 5.86 -101.13 -0.59 -11.01 16 10 C 0.05 0.88 4.90 -3.82 -0.02 0.86 16 11 C -0.10 -2.02 5.41 -26.73 -0.14 -2.17 16 12 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 13 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 14 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -28.49 13.96 55.43 0.77 -27.71 16 17 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 21 N -0.36 -5.29 11.69 30.90 0.36 -4.93 16 22 O 0.08 0.93 11.31 18.10 0.20 1.13 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.91 6.40 -51.93 -0.33 0.58 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.34 5.38 8.58 -39.29 -0.34 5.04 16 35 H 0.07 1.19 6.31 -51.93 -0.33 0.87 16 36 H 0.03 0.50 6.30 -51.93 -0.33 0.17 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -33.20 334.76 -6.80 -40.00 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.66 Total: -0.52 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.15 Total: -13.46 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.43 Total: -49.59 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: 0.20 Total: 1.13 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.20 -6.80 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441228623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.900 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds