Wall clock time and date at job start Mon Mar 30 2020 06:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47320 * 2 1 4 4 N 1.31126 * 126.55484 * 90.01431 * 3 2 1 5 5 C 1.34492 * 105.61910 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.29014 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47379 * 300.05292 * 6 5 4 8 8 C 1.53002 * 109.46901 * 60.05290 * 6 5 4 9 9 N 1.46896 * 109.47124 * 180.02562 * 6 5 4 10 10 C 1.46909 * 110.99872 * 180.02562 * 9 6 5 11 11 C 1.53002 * 109.46888 * 180.02562 * 10 9 6 12 12 C 1.53004 * 109.46761 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46645 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99966 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99329 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99635 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00468 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46621 * 90.00188 * 17 15 13 19 19 H 1.48494 * 109.47024 * 210.00071 * 17 15 13 20 20 H 1.48504 * 109.46846 * 330.00453 * 17 15 13 21 21 N 1.29948 * 107.42516 * 0.02562 * 5 4 3 22 22 O 1.21303 * 110.24669 * 359.97438 * 21 5 4 23 23 H 1.09000 * 109.47216 * 300.00452 * 1 2 3 24 24 H 1.08999 * 109.46926 * 59.99925 * 1 2 3 25 25 H 1.08997 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46779 * 239.99714 * 2 1 3 27 27 H 1.08999 * 109.46926 * 120.00075 * 2 1 3 28 28 H 1.09007 * 109.47213 * 59.99497 * 7 6 5 29 29 H 1.08994 * 109.47308 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47053 * 299.99969 * 7 6 5 31 31 H 1.08999 * 109.47193 * 60.00196 * 8 6 5 32 32 H 1.09004 * 109.47253 * 180.02562 * 8 6 5 33 33 H 1.09002 * 109.47453 * 299.99828 * 8 6 5 34 34 H 1.00900 * 111.00585 * 303.95488 * 9 6 5 35 35 H 1.09000 * 109.46929 * 299.99978 * 10 9 6 36 36 H 1.08997 * 109.47070 * 60.00678 * 10 9 6 37 37 H 1.08992 * 109.47276 * 299.99898 * 11 10 9 38 38 H 1.09003 * 109.47278 * 60.00069 * 11 10 9 39 39 H 1.09000 * 109.46997 * 299.99698 * 12 11 10 40 40 H 1.08997 * 109.47130 * 60.00476 * 12 11 10 41 41 H 0.97003 * 119.99893 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2930 2.1569 1.0533 5 6 2.7122 3.3411 0.5727 6 6 3.1345 4.5357 1.3885 7 6 1.9697 4.9880 2.2715 8 6 4.3255 4.1557 2.2706 9 7 3.5217 5.6307 0.4891 10 6 3.9409 6.8147 1.2512 11 6 4.3350 7.9314 0.2824 12 6 4.7710 9.1647 1.0761 13 6 5.1587 10.2649 0.1219 14 1 5.1003 10.1007 -0.9439 15 6 5.5888 11.4806 0.6097 16 7 5.9276 12.4406 -0.2230 17 14 5.6903 11.7643 2.4532 18 1 7.0373 11.3729 2.9407 19 1 5.4559 13.2010 2.7466 20 1 4.6585 10.9445 3.1378 21 7 2.6851 3.2662 -0.7243 22 8 2.2977 2.1711 -1.0736 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6828 4.1752 2.9389 29 1 2.2753 5.8517 2.8618 30 1 1.1213 5.2587 1.6431 31 1 5.1553 3.8335 1.6416 32 1 4.6307 5.0196 2.8611 33 1 4.0387 3.3430 2.9380 34 1 4.2463 5.3362 -0.1483 35 1 3.1167 7.1531 1.8792 36 1 4.7948 6.5593 1.8786 37 1 5.1590 7.5933 -0.3459 38 1 3.4809 8.1867 -0.3448 39 1 3.9467 9.5027 1.7041 40 1 5.6251 8.9098 1.7035 41 1 6.2298 13.2960 0.1202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441228623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:10 Heat of formation + Delta-G solvation = 26.458976 kcal Electronic energy + Delta-G solvation = -20183.597312 eV Core-core repulsion = 17100.333730 eV Total energy + Delta-G solvation = -3083.263581 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.63896 -39.67952 -36.95680 -36.08105 -35.11604 -33.90162 -31.84965 -31.43888 -28.50499 -28.16425 -26.05066 -25.60281 -24.04291 -22.93894 -21.85488 -20.65035 -19.14104 -18.94230 -18.36602 -17.14694 -16.58444 -16.26709 -16.03220 -15.64028 -15.25427 -15.08913 -14.74660 -14.36835 -13.99211 -13.84655 -13.74351 -13.51930 -13.08624 -13.02725 -12.94089 -12.76620 -12.64204 -12.51897 -12.26706 -12.17196 -12.04587 -11.94481 -11.79490 -11.55035 -11.48087 -11.28064 -10.91095 -10.76592 -9.49569 -8.29531 -6.34320 0.20832 1.18522 1.36005 1.38815 1.51105 1.93772 2.36747 2.39123 2.83512 3.05639 3.30815 3.71228 3.87419 4.07121 4.15846 4.22752 4.25624 4.30918 4.38078 4.51670 4.58626 4.63226 4.72174 4.79137 4.82169 4.85356 4.91361 4.98626 4.99628 5.05004 5.08977 5.15588 5.18789 5.34599 5.49848 5.59057 5.65538 5.94333 6.21641 6.29943 6.74033 7.22757 7.30122 8.87724 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.045489 B = 0.003177 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.383573 B = 8810.066646 C = 9124.308768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C 0.181 3.819 4 N -0.492 5.492 5 C 0.174 3.826 6 C 0.199 3.801 7 C -0.130 4.130 8 C -0.169 4.169 9 N -0.684 5.684 10 C 0.068 3.932 11 C -0.091 4.091 12 C -0.008 4.008 13 C -0.535 4.535 14 H 0.025 0.975 15 C -0.001 4.001 16 N -0.955 5.955 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.242 1.242 21 N -0.394 5.394 22 O 0.071 5.929 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.342 0.658 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.024 0.976 40 H 0.022 0.978 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 -29.574 6.665 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.039 4.039 4 N -0.226 5.226 5 C -0.100 4.100 6 C 0.106 3.894 7 C -0.188 4.188 8 C -0.229 4.229 9 N -0.316 5.316 10 C -0.060 4.060 11 C -0.129 4.129 12 C -0.046 4.046 13 C -0.573 4.573 14 H 0.044 0.956 15 C -0.197 4.197 16 N -0.595 5.595 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.165 1.165 21 N -0.101 5.101 22 O 0.012 5.988 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.160 0.840 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.277 -28.424 6.464 30.908 hybrid contribution 1.122 0.503 0.200 1.246 sum -9.155 -27.921 6.664 30.130 Atomic orbital electron populations 1.21797 0.91947 1.04723 1.02237 1.20543 0.97464 0.80616 1.07897 1.29892 0.94543 0.99605 0.79833 1.71770 1.19084 1.02060 1.29671 1.25787 1.00270 0.95844 0.88082 1.19185 0.96727 0.84016 0.89450 1.21834 0.95923 1.02535 0.98558 1.22447 0.96574 1.03557 1.00321 1.60493 1.46537 1.05157 1.19377 1.22052 0.99562 0.88930 0.95479 1.21256 0.99533 0.94283 0.97793 1.19473 0.96315 0.93188 0.95595 1.21521 1.43887 0.98277 0.93629 0.95622 1.26125 0.94204 0.95482 1.03920 1.70092 1.46801 1.05303 1.37342 0.85562 0.79978 0.77568 0.78952 1.19005 1.21051 1.16485 1.74719 1.18887 1.00237 1.16280 1.85295 1.59737 1.17354 1.36419 0.93059 0.92514 0.87897 0.85426 0.85751 0.90252 0.90101 0.93100 0.93029 0.89904 0.90161 0.84003 0.89994 0.93506 0.93859 0.93676 0.95797 0.95920 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.90 71.98 0.71 -0.23 16 2 C -0.03 -0.19 6.56 29.85 0.20 0.01 16 3 C 0.18 3.32 7.77 88.38 0.69 4.01 16 4 N -0.49 -11.41 11.55 -303.21 -3.50 -14.92 16 5 C 0.17 4.71 6.47 138.46 0.90 5.60 16 6 C 0.20 5.13 0.93 2.78 0.00 5.13 16 7 C -0.13 -3.04 8.22 71.98 0.59 -2.45 16 8 C -0.17 -3.72 8.21 71.98 0.59 -3.13 16 9 N -0.68 -20.69 5.86 -473.88 -2.78 -23.47 16 10 C 0.07 2.14 4.90 86.30 0.42 2.56 16 11 C -0.09 -3.70 5.41 30.60 0.17 -3.53 16 12 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 13 C -0.54 -32.04 9.66 25.60 0.25 -31.79 16 14 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 15 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 16 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 17 Si 0.96 44.77 27.47 68.60 1.88 46.66 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 21 N -0.39 -11.55 11.69 -60.31 -0.71 -12.25 16 22 O 0.07 1.68 11.31 74.83 0.85 2.53 16 23 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.13 0.27 8.14 -2.39 -0.02 0.26 16 27 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 1.76 6.41 -2.39 -0.02 1.74 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.72 6.40 -2.38 -0.02 1.70 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.34 10.65 8.58 -89.69 -0.77 9.88 16 35 H 0.08 2.47 6.31 -2.39 -0.02 2.45 16 36 H 0.05 1.35 6.30 -2.39 -0.02 1.33 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 40 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 41 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -73.72 334.76 1.33 -72.39 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.19 Total: 14.04 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 5.09 Total: -23.68 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -6.69 Total: -111.94 kcal Atomic # 8 Polarization: 1.68 SS G_CDS: 0.85 Total: 2.53 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -73.72 1.33 -72.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441228623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.849 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds