Wall clock time and date at job start Mon Mar 30 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.45556 * 109.47132 * 179.97438 * 11 10 9 13 13 C 1.46455 * 112.15854 * 37.62202 * 12 11 10 14 14 C 1.52973 * 110.09957 * 190.41785 * 13 12 11 15 15 O 1.42920 * 109.52467 * 308.30785 * 14 13 12 16 16 C 1.42620 * 113.92448 * 57.52604 * 15 14 13 17 17 C 1.45884 * 116.09011 * 170.00007 * 12 11 10 18 18 C 1.51945 * 112.03301 * 53.28706 * 17 12 11 19 19 C 1.51749 * 115.49579 * 270.54887 * 18 17 12 20 20 C 1.52802 * 110.95496 * 311.22493 * 19 18 17 21 21 C 1.53010 * 108.27156 * 60.52199 * 20 19 18 22 22 C 1.51988 * 112.15881 * 283.63254 * 17 12 11 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 25 25 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 26 26 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 27 27 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 30 30 H 1.09532 * 109.16216 * 309.89419 * 13 12 11 31 31 H 1.08896 * 110.38261 * 69.00444 * 13 12 11 32 32 H 1.09091 * 109.46569 * 188.32816 * 14 13 12 33 33 H 1.09049 * 109.54463 * 68.44917 * 14 13 12 34 34 H 1.08544 * 110.46120 * 178.98774 * 16 15 14 35 35 H 1.08584 * 110.42639 * 56.06349 * 16 15 14 36 36 H 1.10001 * 109.01260 * 33.68798 * 18 17 12 37 37 H 1.10298 * 108.37705 * 148.61580 * 18 17 12 38 38 H 1.10010 * 108.95402 * 192.14835 * 19 18 17 39 39 H 1.08774 * 111.42115 * 73.84399 * 19 18 17 40 40 H 1.08881 * 109.74886 * 300.92424 * 20 19 18 41 41 H 1.08868 * 109.77543 * 180.14810 * 20 19 18 42 42 H 1.09556 * 108.75295 * 176.88007 * 21 20 19 43 43 H 1.08645 * 109.92113 * 58.23293 * 21 20 19 44 44 H 1.10138 * 108.59210 * 207.03897 * 22 17 12 45 45 H 1.09519 * 109.83788 * 323.30731 * 22 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4263 -6.0934 0.0006 13 6 3.6024 -5.8150 0.8277 14 6 4.6743 -6.8809 0.5931 15 8 4.0989 -8.1797 0.7506 16 6 2.9936 -8.4314 -0.1148 17 6 1.8627 -7.4195 0.2286 18 6 0.7241 -7.7274 -0.7293 19 6 -0.6574 -7.3150 -0.2559 20 6 -0.9110 -7.7940 1.1728 21 6 0.1375 -7.1555 2.0861 22 6 1.5199 -7.6531 1.6908 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 4.0104 -4.8359 0.5547 31 1 3.3284 -5.7925 1.8814 32 1 5.4805 -6.7511 1.3164 33 1 5.0748 -6.7797 -0.4161 34 1 2.6125 -9.4360 0.0388 35 1 3.2820 -8.2825 -1.1510 36 1 0.9301 -7.2468 -1.6971 37 1 0.7177 -8.8129 -0.9244 38 1 -1.4117 -7.7740 -0.9120 39 1 -0.7910 -6.2369 -0.3114 40 1 -0.8234 -8.8783 1.2183 41 1 -1.9067 -7.4906 1.4917 42 1 -0.0708 -7.4492 3.1208 43 1 0.0789 -6.0728 2.0166 44 1 1.5741 -8.7338 1.8958 45 1 2.2701 -7.1747 2.3294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451818231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:06 Heat of formation + Delta-G solvation = -61.418150 kcal Electronic energy + Delta-G solvation = -22064.449175 eV Core-core repulsion = 19080.915299 eV Total energy + Delta-G solvation = -2983.533876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57497 -37.18058 -35.74680 -33.40807 -31.99284 -31.20631 -30.63373 -28.36298 -26.03058 -25.42003 -23.43242 -22.64229 -22.13965 -20.81549 -19.39468 -18.48736 -16.59403 -16.15508 -15.98590 -15.53065 -15.22390 -14.85226 -14.50815 -14.31977 -13.85513 -13.62110 -13.55375 -13.12149 -12.35839 -12.17915 -12.11556 -12.02818 -11.88197 -11.61729 -11.45159 -11.32744 -10.93685 -10.83817 -10.73465 -10.57661 -10.52150 -10.24564 -10.18682 -9.86689 -9.64663 -9.40038 -9.28449 -9.00405 -8.33618 -7.68580 -5.99109 -4.01393 3.33530 3.37896 3.40306 3.88157 3.99735 4.46694 4.58500 4.74108 4.85177 5.11424 5.17177 5.20501 5.23646 5.33112 5.35238 5.36772 5.46119 5.60943 5.63316 5.70536 5.74156 5.79573 5.84273 5.87700 5.94457 5.98724 6.03437 6.10636 6.21393 6.22245 6.29303 6.33705 6.46710 6.53857 6.74325 6.84060 7.09826 7.21233 7.52321 7.64195 7.68095 7.83453 8.00898 8.44033 9.05413 9.62525 11.12231 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.004921 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.715204 B = 5688.092211 C = 6485.511031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.115 4.115 11 C 0.075 3.925 12 N -0.563 5.563 13 C 0.026 3.974 14 C 0.064 3.936 15 O -0.386 6.386 16 C 0.067 3.933 17 C 0.110 3.890 18 C -0.101 4.101 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.132 4.132 23 H 0.261 0.739 24 H 0.015 0.985 25 H 0.013 0.987 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -18.135 1.040 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.152 4.152 11 C -0.051 4.051 12 N -0.289 5.289 13 C -0.102 4.102 14 C -0.013 4.013 15 O -0.304 6.304 16 C -0.010 4.010 17 C 0.020 3.980 18 C -0.139 4.139 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.171 4.171 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.763 -18.186 0.757 18.411 hybrid contribution 0.003 1.268 0.603 1.404 sum 2.766 -16.919 1.359 17.197 Atomic orbital electron populations 1.69956 1.06046 1.26658 1.50867 1.25019 0.94835 0.99205 0.95362 0.86671 0.79595 0.83206 0.78599 1.20240 1.21298 1.20287 1.21203 0.92937 0.91090 1.50560 0.92829 1.19040 0.93961 0.91258 0.97081 1.21864 0.99426 0.93459 1.00478 1.21925 0.93829 0.89111 1.00241 1.58612 1.10577 1.01645 1.58050 1.22607 0.91352 1.00304 0.95889 1.22713 0.94980 0.82128 1.01454 1.87792 1.47630 1.33309 1.61711 1.23315 0.86100 0.97732 0.93887 1.21089 0.94251 0.89123 0.93511 1.21152 0.93087 1.00941 0.98715 1.21326 0.96001 1.02097 0.96261 1.21443 0.98552 0.99912 0.95408 1.21462 0.94680 1.01172 0.98596 1.21791 0.96981 1.01442 0.96877 0.92984 0.96625 0.96849 0.93234 0.92719 0.91420 0.94859 0.88515 0.94304 0.88954 0.92689 0.89156 0.92482 0.91022 0.92213 0.92507 0.91237 0.92302 0.92138 0.92716 0.91273 0.92352 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.49 16 10 C -0.11 -2.35 4.04 -26.74 -0.11 -2.45 16 11 C 0.07 1.30 4.07 -4.55 -0.02 1.28 16 12 N -0.56 -8.39 3.98 -220.65 -0.88 -9.27 16 13 C 0.03 0.37 4.50 -4.08 -0.02 0.35 16 14 C 0.06 0.80 7.05 37.14 0.26 1.06 16 15 O -0.39 -5.14 10.16 -35.23 -0.36 -5.50 16 16 C 0.07 0.80 5.13 38.53 0.20 1.00 16 17 C 0.11 1.41 0.52 -131.83 -0.07 1.34 16 18 C -0.10 -1.18 4.09 -27.90 -0.11 -1.29 16 19 C -0.12 -1.40 5.50 -27.47 -0.15 -1.55 16 20 C -0.12 -1.29 5.98 -26.83 -0.16 -1.45 16 21 C -0.12 -1.53 5.64 -27.16 -0.15 -1.68 16 22 C -0.13 -1.68 4.09 -27.68 -0.11 -1.79 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 1.00 6.31 -51.93 -0.33 0.67 16 27 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 28 H 0.07 1.20 6.93 -51.93 -0.36 0.84 16 29 H 0.03 0.60 5.29 -51.93 -0.27 0.32 16 30 H 0.10 1.46 5.70 -51.63 -0.29 1.16 16 31 H 0.04 0.58 6.48 -51.99 -0.34 0.24 16 32 H 0.09 0.98 8.15 -51.88 -0.42 0.56 16 33 H 0.05 0.66 8.15 -51.90 -0.42 0.24 16 34 H 0.09 0.92 7.71 -52.18 -0.40 0.52 16 35 H 0.06 0.68 8.11 -52.16 -0.42 0.26 16 36 H 0.07 0.90 8.08 -51.36 -0.42 0.48 16 37 H 0.06 0.59 7.64 -51.19 -0.39 0.20 16 38 H 0.06 0.59 8.23 -51.35 -0.42 0.17 16 39 H 0.07 0.95 6.62 -52.06 -0.34 0.60 16 40 H 0.06 0.59 8.13 -52.00 -0.42 0.17 16 41 H 0.06 0.65 8.13 -52.00 -0.42 0.22 16 42 H 0.05 0.64 8.19 -51.61 -0.42 0.21 16 43 H 0.07 1.01 5.76 -52.13 -0.30 0.71 16 44 H 0.06 0.69 7.75 -51.28 -0.40 0.30 16 45 H 0.06 0.92 5.85 -51.64 -0.30 0.62 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -29.83 326.11 -9.52 -39.34 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.91 Total: -1.68 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.00 Total: -18.23 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.14 Total: -35.57 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.36 Total: -5.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.83 -9.52 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451818231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.075 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds