Wall clock time and date at job start Mon Mar 30 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.45556 * 109.47132 * 179.97438 * 11 10 9 13 13 C 1.46455 * 112.15854 * 37.62202 * 12 11 10 14 14 C 1.52973 * 110.09957 * 190.41785 * 13 12 11 15 15 O 1.42920 * 109.52467 * 308.30785 * 14 13 12 16 16 C 1.42620 * 113.92448 * 57.52604 * 15 14 13 17 17 C 1.45884 * 116.09011 * 170.00007 * 12 11 10 18 18 C 1.51945 * 112.03301 * 53.28706 * 17 12 11 19 19 C 1.51749 * 115.49579 * 270.54887 * 18 17 12 20 20 C 1.52802 * 110.95496 * 311.22493 * 19 18 17 21 21 C 1.53010 * 108.27156 * 60.52199 * 20 19 18 22 22 C 1.51988 * 112.15881 * 283.63254 * 17 12 11 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 25 25 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 26 26 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 27 27 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 30 30 H 1.09532 * 109.16216 * 309.89419 * 13 12 11 31 31 H 1.08896 * 110.38261 * 69.00444 * 13 12 11 32 32 H 1.09091 * 109.46569 * 188.32816 * 14 13 12 33 33 H 1.09049 * 109.54463 * 68.44917 * 14 13 12 34 34 H 1.08544 * 110.46120 * 178.98774 * 16 15 14 35 35 H 1.08584 * 110.42639 * 56.06349 * 16 15 14 36 36 H 1.10001 * 109.01260 * 33.68798 * 18 17 12 37 37 H 1.10298 * 108.37705 * 148.61580 * 18 17 12 38 38 H 1.10010 * 108.95402 * 192.14835 * 19 18 17 39 39 H 1.08774 * 111.42115 * 73.84399 * 19 18 17 40 40 H 1.08881 * 109.74886 * 300.92424 * 20 19 18 41 41 H 1.08868 * 109.77543 * 180.14810 * 20 19 18 42 42 H 1.09556 * 108.75295 * 176.88007 * 21 20 19 43 43 H 1.08645 * 109.92113 * 58.23293 * 21 20 19 44 44 H 1.10138 * 108.59210 * 207.03897 * 22 17 12 45 45 H 1.09519 * 109.83788 * 323.30731 * 22 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4263 -6.0934 0.0006 13 6 3.6024 -5.8150 0.8277 14 6 4.6743 -6.8809 0.5931 15 8 4.0989 -8.1797 0.7506 16 6 2.9936 -8.4314 -0.1148 17 6 1.8627 -7.4195 0.2286 18 6 0.7241 -7.7274 -0.7293 19 6 -0.6574 -7.3150 -0.2559 20 6 -0.9110 -7.7940 1.1728 21 6 0.1375 -7.1555 2.0861 22 6 1.5199 -7.6531 1.6908 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 4.0104 -4.8359 0.5547 31 1 3.3284 -5.7925 1.8814 32 1 5.4805 -6.7511 1.3164 33 1 5.0748 -6.7797 -0.4161 34 1 2.6125 -9.4360 0.0388 35 1 3.2820 -8.2825 -1.1510 36 1 0.9301 -7.2468 -1.6971 37 1 0.7177 -8.8129 -0.9244 38 1 -1.4117 -7.7740 -0.9120 39 1 -0.7910 -6.2369 -0.3114 40 1 -0.8234 -8.8783 1.2183 41 1 -1.9067 -7.4906 1.4917 42 1 -0.0708 -7.4492 3.1208 43 1 0.0789 -6.0728 2.0166 44 1 1.5741 -8.7338 1.8958 45 1 2.2701 -7.1747 2.3294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451818231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:05 Heat of formation + Delta-G solvation = -79.152431 kcal Electronic energy + Delta-G solvation = -22065.218191 eV Core-core repulsion = 19080.915299 eV Total energy + Delta-G solvation = -2984.302892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64456 -38.16912 -37.15728 -35.28964 -33.38963 -32.52925 -31.73573 -29.82168 -27.46351 -26.73199 -24.47140 -24.31372 -23.23961 -22.17347 -20.78054 -19.57900 -18.51298 -17.39195 -17.13346 -16.63308 -16.52984 -16.38873 -15.94480 -15.38696 -15.14472 -14.88533 -14.70840 -14.23786 -14.20742 -13.75257 -13.26787 -13.20235 -13.05918 -12.99691 -12.76921 -12.69900 -12.48074 -12.44214 -12.08453 -11.93459 -11.74374 -11.48856 -11.41116 -11.29644 -11.20617 -11.05538 -10.86646 -10.55986 -10.32363 -8.90942 -8.20931 -6.32390 1.38963 1.42165 1.50077 2.39789 2.77413 2.98765 3.12069 3.62047 3.75983 3.86378 4.05686 4.13542 4.17815 4.20933 4.25579 4.33792 4.39473 4.47837 4.53591 4.64681 4.67577 4.70282 4.75713 4.80571 4.83457 4.91589 4.95732 4.96422 5.00757 5.11928 5.15404 5.22065 5.23094 5.26505 5.39085 5.47178 5.48248 5.56617 5.72026 5.83140 6.19240 6.23239 6.28427 6.46260 6.84177 7.36920 8.90822 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.004921 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.715204 B = 5688.092211 C = 6485.511031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.097 4.097 11 C 0.092 3.908 12 N -0.564 5.564 13 C 0.025 3.975 14 C 0.069 3.931 15 O -0.395 6.395 16 C 0.069 3.931 17 C 0.104 3.896 18 C -0.101 4.101 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.127 4.127 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.014 1.014 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -19.545 0.926 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.135 4.135 11 C -0.035 4.035 12 N -0.290 5.290 13 C -0.103 4.103 14 C -0.007 4.007 15 O -0.313 6.313 16 C -0.008 4.008 17 C 0.015 3.985 18 C -0.139 4.139 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.166 4.166 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.005 0.995 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.933 -19.617 0.642 20.018 hybrid contribution -0.397 1.684 0.650 1.848 sum 3.537 -17.933 1.293 18.324 Atomic orbital electron populations 1.70097 1.07835 1.27831 1.51606 1.25990 0.95765 1.03379 0.94665 0.85503 0.78290 0.78059 0.79216 1.19099 1.20782 1.19171 1.21647 0.93492 0.92331 1.50658 0.92219 1.18920 0.94300 0.93100 0.94476 1.21613 0.98177 0.93202 1.00517 1.21573 0.93638 0.88785 0.99505 1.58629 1.10173 1.01808 1.58389 1.22630 0.91676 1.00771 0.95188 1.22732 0.94466 0.81138 1.02399 1.87787 1.48008 1.33349 1.62154 1.23442 0.85196 0.98421 0.93784 1.21283 0.95370 0.87909 0.93973 1.21165 0.92375 1.02647 0.97705 1.21320 0.96806 1.00427 0.97250 1.21427 0.98032 1.00955 0.94373 1.21446 0.95494 0.99400 0.99669 1.21736 0.96288 1.02192 0.96382 0.92771 0.99174 0.99544 0.92875 0.92770 0.92126 0.95818 0.89689 0.95242 0.87059 0.92159 0.86688 0.92302 0.92070 0.89299 0.90794 0.94162 0.90150 0.91956 0.91853 0.94274 0.90624 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.60 4.97 29.84 0.15 1.75 16 10 C -0.10 -4.12 4.04 30.59 0.12 -4.00 16 11 C 0.09 3.30 4.07 86.56 0.35 3.66 16 12 N -0.56 -16.68 3.98 -852.01 -3.39 -20.07 16 13 C 0.02 0.70 4.50 86.38 0.39 1.09 16 14 C 0.07 1.60 7.05 71.97 0.51 2.11 16 15 O -0.39 -9.54 10.16 -148.98 -1.51 -11.05 16 16 C 0.07 1.45 5.13 72.87 0.37 1.82 16 17 C 0.10 2.51 0.52 3.93 0.00 2.51 16 18 C -0.10 -2.18 4.09 29.84 0.12 -2.06 16 19 C -0.12 -2.72 5.50 30.12 0.17 -2.55 16 20 C -0.11 -2.29 5.98 30.53 0.18 -2.11 16 21 C -0.12 -3.02 5.64 30.32 0.17 -2.85 16 22 C -0.13 -3.06 4.09 29.98 0.12 -2.93 16 23 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 26 H 0.05 2.19 6.31 -2.39 -0.02 2.18 16 27 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 28 H 0.06 2.26 6.93 -2.39 -0.02 2.24 16 29 H 0.02 0.90 5.29 -2.39 -0.01 0.89 16 30 H 0.08 2.56 5.70 -2.10 -0.01 2.55 16 31 H 0.03 0.89 6.48 -2.44 -0.02 0.87 16 32 H 0.11 2.13 8.15 -2.34 -0.02 2.11 16 33 H 0.06 1.34 8.15 -2.36 -0.02 1.32 16 34 H 0.12 1.87 7.71 -2.63 -0.02 1.85 16 35 H 0.06 1.24 8.11 -2.61 -0.02 1.22 16 36 H 0.06 1.46 8.08 -1.85 -0.01 1.44 16 37 H 0.09 1.43 7.64 -1.69 -0.01 1.41 16 38 H 0.07 1.41 8.23 -1.85 -0.02 1.39 16 39 H 0.04 1.13 6.62 -2.51 -0.02 1.11 16 40 H 0.08 1.35 8.13 -2.45 -0.02 1.33 16 41 H 0.06 1.27 8.13 -2.46 -0.02 1.25 16 42 H 0.06 1.42 8.19 -2.09 -0.02 1.40 16 43 H 0.04 1.19 5.76 -2.57 -0.01 1.18 16 44 H 0.08 1.57 7.75 -1.78 -0.01 1.56 16 45 H 0.05 1.32 5.85 -2.11 -0.01 1.31 16 Total: -1.00 -64.95 326.11 1.72 -63.23 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.96 Total: 12.94 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.35 Total: -34.38 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -3.11 Total: -77.46 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.51 Total: -11.05 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.95 1.72 -63.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451818231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.927 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds