Wall clock time and date at job start Mon Mar 30 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48503 * 109.46936 * 269.99682 * 3 2 1 5 5 H 1.48505 * 109.47117 * 29.99770 * 3 2 1 6 6 H 1.48504 * 109.47014 * 149.99862 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00351 * 173.59116 * 7 2 1 9 9 C 1.50705 * 119.99853 * 353.60472 * 7 2 1 10 10 C 1.52995 * 115.55190 * 85.43831 * 9 7 2 11 11 N 1.46897 * 109.47054 * 65.05202 * 10 9 7 12 12 C 1.46907 * 111.00028 * 185.34670 * 11 10 9 13 13 C 1.53002 * 109.46996 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.46816 * 60.00623 * 13 12 11 15 15 O 1.42900 * 109.47279 * 300.00314 * 13 12 11 16 16 C 1.52997 * 109.46805 * 180.02562 * 13 12 11 17 17 C 1.53002 * 109.47279 * 185.00112 * 16 13 12 18 18 C 1.54269 * 110.02944 * 292.17224 * 17 16 13 19 19 C 1.54892 * 104.19252 * 217.10106 * 18 17 16 20 20 C 1.54888 * 102.74926 * 37.94096 * 19 18 17 21 21 C 1.53872 * 110.03494 * 175.00089 * 17 16 13 22 22 C 1.52995 * 117.49575 * 231.11149 * 9 7 2 23 23 C 1.53001 * 117.49509 * 299.76797 * 9 7 2 24 24 H 0.97012 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47410 * 305.04736 * 10 9 7 26 26 H 1.09000 * 109.46918 * 185.04903 * 10 9 7 27 27 H 1.00904 * 110.99959 * 61.39284 * 11 10 9 28 28 H 1.08999 * 109.46413 * 59.99999 * 12 11 10 29 29 H 1.08995 * 109.46856 * 300.00174 * 12 11 10 30 30 H 0.96702 * 113.99391 * 299.99928 * 15 13 12 31 31 H 1.09007 * 109.47039 * 65.00148 * 16 13 12 32 32 H 1.08997 * 109.47206 * 305.00352 * 16 13 12 33 33 H 1.09003 * 110.01520 * 53.60613 * 17 16 13 34 34 H 1.08993 * 110.48599 * 335.77789 * 18 17 16 35 35 H 1.09000 * 110.48580 * 98.42480 * 18 17 16 36 36 H 1.08998 * 110.75591 * 279.62765 * 19 18 17 37 37 H 1.08999 * 110.91620 * 156.32584 * 19 18 17 38 38 H 1.08997 * 110.49106 * 203.37710 * 20 19 18 39 39 H 1.09002 * 110.48871 * 80.73583 * 20 19 18 40 40 H 1.08999 * 110.02943 * 238.57226 * 21 17 16 41 41 H 1.09002 * 110.03135 * 359.95135 * 21 17 16 42 42 H 1.08995 * 117.50443 * 215.00046 * 22 9 7 43 43 H 1.09004 * 117.50006 * 0.02562 * 22 9 7 44 44 H 1.09004 * 117.49736 * 359.97438 * 23 9 7 45 45 H 1.09001 * 117.50200 * 144.97488 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1039 9 6 1.2580 -2.4951 0.1465 10 6 0.7036 -3.0869 -1.1508 11 7 1.8167 -3.4589 -2.0343 12 6 1.3226 -3.9136 -3.3409 13 6 2.5082 -4.2908 -4.2314 14 1 3.0768 -5.0919 -3.7592 15 8 3.3506 -3.1506 -4.4112 16 6 1.9935 -4.7637 -5.5924 17 6 3.1687 -5.2581 -6.4383 18 6 4.0841 -4.0745 -6.8140 19 6 4.5446 -4.3941 -8.2580 20 6 3.2732 -5.0090 -8.8940 21 6 2.6531 -5.8522 -7.7608 22 6 1.7455 -3.4729 1.2174 23 6 0.4400 -2.7007 1.4230 24 1 -0.4850 0.8402 -0.0004 25 1 0.0761 -2.3475 -1.6486 26 1 0.1100 -3.9720 -0.9219 27 1 2.4006 -4.1606 -1.6043 28 1 0.7542 -3.1124 -3.8131 29 1 0.6797 -4.7830 -3.2036 30 1 2.9094 -2.3974 -4.8273 31 1 1.5016 -3.9355 -6.1026 32 1 1.2816 -5.5765 -5.4491 33 1 3.7352 -6.0089 -5.8874 34 1 3.5264 -3.1384 -6.7899 35 1 4.9410 -4.0268 -6.1421 36 1 5.3613 -5.1159 -8.2521 37 1 4.8381 -3.4851 -8.7830 38 1 3.5383 -5.6431 -9.7400 39 1 2.5846 -4.2237 -9.2058 40 1 2.9700 -6.8911 -7.8520 41 1 1.5656 -5.7891 -7.7995 42 1 1.6714 -4.5379 0.9978 43 1 2.6060 -3.1751 1.8167 44 1 0.4422 -1.8952 2.1574 45 1 -0.4934 -3.2573 1.3386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566123833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:23 Heat of formation + Delta-G solvation = -52.343328 kcal Electronic energy + Delta-G solvation = -20800.795744 eV Core-core repulsion = 17817.655382 eV Total energy + Delta-G solvation = -2983.140362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.05244 -37.24694 -36.41577 -33.72898 -31.79751 -31.67002 -28.70227 -28.31433 -25.72030 -24.82105 -22.72692 -21.38099 -20.92711 -20.73090 -19.61284 -18.90221 -16.56665 -16.11926 -15.72025 -15.45021 -14.85896 -14.53614 -14.22799 -14.03961 -13.74802 -13.36845 -13.31037 -13.09889 -12.53945 -11.96094 -11.82900 -11.43877 -11.36727 -11.21405 -11.13751 -10.97860 -10.86443 -10.81612 -10.66648 -10.60521 -10.46501 -10.42069 -10.38081 -10.12283 -9.59595 -9.20533 -8.72852 -8.30246 -7.99821 -7.43533 -5.89503 -3.90044 3.39247 3.45140 3.50076 4.35260 4.53647 4.56457 4.57036 4.73595 4.89300 5.09142 5.29344 5.31544 5.36844 5.40205 5.44565 5.50939 5.56328 5.62616 5.64309 5.70621 5.76888 5.84041 5.89681 5.97044 6.04639 6.07587 6.19882 6.22621 6.34273 6.36851 6.38773 6.46008 6.54690 6.68606 6.79044 6.93712 7.16776 7.52527 7.63901 7.97899 8.04242 8.06914 8.25234 8.63319 9.09253 9.72649 11.20520 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.003987 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.573233 B = 7021.991008 C = 7754.353010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.060 0.940 9 C 0.054 3.946 10 C 0.108 3.892 11 N -0.658 5.658 12 C 0.028 3.972 13 C 0.114 3.886 14 H 0.089 0.911 15 O -0.542 6.542 16 C -0.144 4.144 17 C -0.086 4.086 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.216 4.216 23 C -0.160 4.160 24 H 0.256 0.744 25 H 0.074 0.926 26 H -0.009 1.009 27 H 0.329 0.671 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.370 0.630 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -10.713 -14.487 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.504 4.504 8 H 0.078 0.922 9 C 0.054 3.946 10 C -0.021 4.021 11 N -0.288 5.288 12 C -0.102 4.102 13 C 0.054 3.946 14 H 0.107 0.893 15 O -0.346 6.346 16 C -0.183 4.183 17 C -0.105 4.105 18 C -0.144 4.144 19 C -0.169 4.169 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.253 4.253 23 C -0.198 4.198 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.009 0.991 27 H 0.146 0.854 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.217 0.783 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.985 -10.326 -14.411 18.171 hybrid contribution -0.631 0.286 0.025 0.693 sum 3.353 -10.040 -14.386 17.861 Atomic orbital electron populations 1.70019 1.05811 1.26022 1.50798 1.24931 0.94741 0.98703 0.95144 0.86658 0.79907 0.83752 0.78004 1.20794 1.21573 1.20006 1.20320 0.92883 0.88357 1.48791 0.92223 1.18809 0.96978 0.93716 0.85145 1.21551 0.90658 0.95641 0.94263 1.60160 1.21420 1.44823 1.02371 1.22658 0.96184 0.98372 0.93027 1.21845 0.91269 0.88865 0.92645 0.89318 1.86602 1.39563 1.24278 1.84166 1.22419 0.97758 1.01371 0.96730 1.21700 0.96008 0.97586 0.95166 1.22383 0.99354 0.97694 0.94922 1.22577 0.97216 1.00189 0.96880 1.22349 0.97340 0.99040 0.97496 1.22249 1.00235 0.99008 0.94557 1.22987 0.98501 0.95387 1.08462 1.22521 0.91912 1.01182 1.04170 0.93442 0.90753 0.99122 0.85398 0.91301 0.96169 0.78320 0.91542 0.91524 0.91383 0.91495 0.91034 0.91980 0.91946 0.92257 0.91871 0.92252 0.91945 0.92294 0.90522 0.90081 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 12.92 55.43 0.72 -24.79 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.47 -12.92 8.74 -34.44 -0.30 -13.22 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.05 1.35 1.55 -155.66 -0.24 1.11 16 10 C 0.11 2.43 5.51 -3.83 -0.02 2.41 16 11 N -0.66 -12.93 6.24 -113.78 -0.71 -13.64 16 12 C 0.03 0.44 5.34 -3.82 -0.02 0.42 16 13 C 0.11 1.49 3.17 -26.73 -0.08 1.40 16 14 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 15 O -0.54 -7.96 10.76 -35.23 -0.38 -8.34 16 16 C -0.14 -1.52 4.15 -26.73 -0.11 -1.63 16 17 C -0.09 -0.86 2.93 -89.50 -0.26 -1.12 16 18 C -0.11 -1.10 4.74 -25.07 -0.12 -1.22 16 19 C -0.13 -1.19 6.91 -24.74 -0.17 -1.36 16 20 C -0.12 -1.06 6.83 -25.07 -0.17 -1.23 16 21 C -0.12 -1.09 6.46 -25.61 -0.17 -1.25 16 22 C -0.22 -4.79 9.96 -26.70 -0.27 -5.06 16 23 C -0.16 -3.83 9.41 -26.69 -0.25 -4.08 16 24 H 0.26 7.08 8.31 -40.81 -0.34 6.74 16 25 H 0.07 1.88 8.13 -51.93 -0.42 1.45 16 26 H -0.01 -0.20 8.09 -51.93 -0.42 -0.62 16 27 H 0.33 6.21 8.79 -39.29 -0.35 5.87 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.37 4.77 8.62 45.56 0.39 5.16 16 31 H 0.07 0.69 8.00 -51.92 -0.42 0.28 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.71 6.85 -51.93 -0.36 0.35 16 35 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 44 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -29.04 356.01 -10.15 -39.19 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.84 Total: 8.58 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -2.28 Total: -23.10 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.01 Total: -38.44 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.38 Total: -8.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.04 -10.15 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566123833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.154 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds