Wall clock time and date at job start Mon Mar 30 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48503 * 109.46936 * 269.99682 * 3 2 1 5 5 H 1.48505 * 109.47117 * 29.99770 * 3 2 1 6 6 H 1.48504 * 109.47014 * 149.99862 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00351 * 173.59116 * 7 2 1 9 9 C 1.50705 * 119.99853 * 353.60472 * 7 2 1 10 10 C 1.52995 * 115.55190 * 85.43831 * 9 7 2 11 11 N 1.46897 * 109.47054 * 65.05202 * 10 9 7 12 12 C 1.46907 * 111.00028 * 185.34670 * 11 10 9 13 13 C 1.53002 * 109.46996 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.46816 * 60.00623 * 13 12 11 15 15 O 1.42900 * 109.47279 * 300.00314 * 13 12 11 16 16 C 1.52997 * 109.46805 * 180.02562 * 13 12 11 17 17 C 1.53002 * 109.47279 * 185.00112 * 16 13 12 18 18 C 1.54269 * 110.02944 * 292.17224 * 17 16 13 19 19 C 1.54892 * 104.19252 * 217.10106 * 18 17 16 20 20 C 1.54888 * 102.74926 * 37.94096 * 19 18 17 21 21 C 1.53872 * 110.03494 * 175.00089 * 17 16 13 22 22 C 1.52995 * 117.49575 * 231.11149 * 9 7 2 23 23 C 1.53001 * 117.49509 * 299.76797 * 9 7 2 24 24 H 0.97012 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47410 * 305.04736 * 10 9 7 26 26 H 1.09000 * 109.46918 * 185.04903 * 10 9 7 27 27 H 1.00904 * 110.99959 * 61.39284 * 11 10 9 28 28 H 1.08999 * 109.46413 * 59.99999 * 12 11 10 29 29 H 1.08995 * 109.46856 * 300.00174 * 12 11 10 30 30 H 0.96702 * 113.99391 * 299.99928 * 15 13 12 31 31 H 1.09007 * 109.47039 * 65.00148 * 16 13 12 32 32 H 1.08997 * 109.47206 * 305.00352 * 16 13 12 33 33 H 1.09003 * 110.01520 * 53.60613 * 17 16 13 34 34 H 1.08993 * 110.48599 * 335.77789 * 18 17 16 35 35 H 1.09000 * 110.48580 * 98.42480 * 18 17 16 36 36 H 1.08998 * 110.75591 * 279.62765 * 19 18 17 37 37 H 1.08999 * 110.91620 * 156.32584 * 19 18 17 38 38 H 1.08997 * 110.49106 * 203.37710 * 20 19 18 39 39 H 1.09002 * 110.48871 * 80.73583 * 20 19 18 40 40 H 1.08999 * 110.02943 * 238.57226 * 21 17 16 41 41 H 1.09002 * 110.03135 * 359.95135 * 21 17 16 42 42 H 1.08995 * 117.50443 * 215.00046 * 22 9 7 43 43 H 1.09004 * 117.50006 * 0.02562 * 22 9 7 44 44 H 1.09004 * 117.49736 * 359.97438 * 23 9 7 45 45 H 1.09001 * 117.50200 * 144.97488 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1039 9 6 1.2580 -2.4951 0.1465 10 6 0.7036 -3.0869 -1.1508 11 7 1.8167 -3.4589 -2.0343 12 6 1.3226 -3.9136 -3.3409 13 6 2.5082 -4.2908 -4.2314 14 1 3.0768 -5.0919 -3.7592 15 8 3.3506 -3.1506 -4.4112 16 6 1.9935 -4.7637 -5.5924 17 6 3.1687 -5.2581 -6.4383 18 6 4.0841 -4.0745 -6.8140 19 6 4.5446 -4.3941 -8.2580 20 6 3.2732 -5.0090 -8.8940 21 6 2.6531 -5.8522 -7.7608 22 6 1.7455 -3.4729 1.2174 23 6 0.4400 -2.7007 1.4230 24 1 -0.4850 0.8402 -0.0004 25 1 0.0761 -2.3475 -1.6486 26 1 0.1100 -3.9720 -0.9219 27 1 2.4006 -4.1606 -1.6043 28 1 0.7542 -3.1124 -3.8131 29 1 0.6797 -4.7830 -3.2036 30 1 2.9094 -2.3974 -4.8273 31 1 1.5016 -3.9355 -6.1026 32 1 1.2816 -5.5765 -5.4491 33 1 3.7352 -6.0089 -5.8874 34 1 3.5264 -3.1384 -6.7899 35 1 4.9410 -4.0268 -6.1421 36 1 5.3613 -5.1159 -8.2521 37 1 4.8381 -3.4851 -8.7830 38 1 3.5383 -5.6431 -9.7400 39 1 2.5846 -4.2237 -9.2058 40 1 2.9700 -6.8911 -7.8520 41 1 1.5656 -5.7891 -7.7995 42 1 1.6714 -4.5379 0.9978 43 1 2.6060 -3.1751 1.8167 44 1 0.4422 -1.8952 2.1574 45 1 -0.4934 -3.2573 1.3386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566123833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:22 Heat of formation + Delta-G solvation = -69.945719 kcal Electronic energy + Delta-G solvation = -20801.559041 eV Core-core repulsion = 17817.655382 eV Total energy + Delta-G solvation = -2983.903659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.98089 -38.80219 -37.68619 -35.23566 -33.87343 -32.64861 -29.52182 -29.42296 -27.60185 -26.31525 -24.10171 -22.86809 -22.40981 -21.46192 -20.84272 -20.40192 -18.13990 -17.47223 -16.75662 -16.73862 -16.44854 -15.88070 -15.65281 -15.30017 -15.10155 -14.90537 -14.53311 -14.08513 -13.88746 -13.49997 -13.13364 -12.92998 -12.84186 -12.76698 -12.55328 -12.31948 -12.19761 -12.01756 -11.91307 -11.82485 -11.68610 -11.44726 -11.38891 -11.32800 -11.20326 -10.72151 -10.50565 -10.29871 -9.89451 -8.97987 -8.02427 -6.08029 1.43451 1.44711 1.54294 2.49294 3.17575 3.27663 3.58185 3.79289 3.79913 3.81760 3.85870 4.11334 4.28857 4.35491 4.42279 4.49596 4.54091 4.63794 4.67695 4.74234 4.77851 4.78460 4.80486 4.86295 4.91271 4.99004 5.01350 5.08710 5.09090 5.15118 5.18878 5.28077 5.32688 5.36093 5.52098 5.54173 5.63997 5.64489 5.76225 5.89314 6.37912 6.53384 6.74839 6.94860 7.02054 7.56938 9.06630 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.003987 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.573233 B = 7021.991008 C = 7754.353010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.478 4.478 8 H 0.045 0.955 9 C 0.027 3.973 10 C 0.123 3.877 11 N -0.671 5.671 12 C 0.030 3.970 13 C 0.122 3.878 14 H 0.089 0.911 15 O -0.558 6.558 16 C -0.134 4.134 17 C -0.085 4.085 18 C -0.107 4.107 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.189 4.189 23 C -0.167 4.167 24 H 0.256 0.744 25 H 0.040 0.960 26 H 0.004 0.996 27 H 0.335 0.665 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.376 0.624 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -11.870 -15.535 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.006 4.006 11 N -0.302 5.302 12 C -0.099 4.099 13 C 0.062 3.938 14 H 0.107 0.893 15 O -0.364 6.364 16 C -0.172 4.172 17 C -0.103 4.103 18 C -0.144 4.144 19 C -0.168 4.168 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.226 4.226 23 C -0.205 4.205 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.022 0.978 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.223 0.777 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.352 -11.492 -15.466 19.753 hybrid contribution -0.716 0.626 0.361 1.018 sum 3.636 -10.866 -15.105 18.959 Atomic orbital electron populations 1.70114 1.06842 1.26543 1.51714 1.25554 0.95481 1.01492 0.95104 0.85780 0.78803 0.80371 0.77947 1.20541 1.21166 1.19771 1.20521 0.92398 0.90145 1.48572 0.93720 1.18927 0.98009 0.93904 0.86553 1.21185 0.91015 0.95029 0.93359 1.60053 1.20870 1.45903 1.03351 1.22722 0.97393 0.98454 0.91358 1.21821 0.90056 0.88329 0.93582 0.89317 1.86581 1.40387 1.25038 1.84375 1.22315 0.98107 1.01736 0.95081 1.21679 0.95600 0.97286 0.95755 1.22343 0.98786 0.97760 0.95531 1.22573 0.97697 1.00505 0.96001 1.22352 0.96865 0.99156 0.97703 1.22233 1.00496 0.99357 0.93735 1.22971 0.97138 0.96454 1.06083 1.22441 0.93398 1.01292 1.03354 0.93557 0.94153 0.97821 0.84772 0.92294 0.94687 0.77664 0.91304 0.90396 0.91747 0.91996 0.92769 0.91727 0.91654 0.91141 0.91817 0.91511 0.91501 0.89308 0.90737 0.92468 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.06 12.92 21.45 0.28 -52.78 16 2 C 0.02 1.26 5.39 84.66 0.46 1.71 16 3 Si 0.94 44.98 29.54 68.60 2.03 47.01 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.48 -26.73 8.74 25.60 0.22 -26.51 16 8 H 0.04 2.57 7.82 -2.91 -0.02 2.55 16 9 C 0.03 1.32 1.55 -52.93 -0.08 1.24 16 10 C 0.12 5.52 5.51 86.30 0.48 6.00 16 11 N -0.67 -25.88 6.24 -513.89 -3.21 -29.09 16 12 C 0.03 0.92 5.34 86.30 0.46 1.38 16 13 C 0.12 3.04 3.17 30.59 0.10 3.14 16 14 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 15 O -0.56 -16.12 10.76 -148.98 -1.60 -17.72 16 16 C -0.13 -2.58 4.15 30.59 0.13 -2.46 16 17 C -0.08 -1.55 2.93 -10.07 -0.03 -1.58 16 18 C -0.11 -2.11 4.74 31.67 0.15 -1.96 16 19 C -0.13 -2.17 6.91 31.89 0.22 -1.95 16 20 C -0.12 -1.83 6.83 31.67 0.22 -1.61 16 21 C -0.12 -1.86 6.46 31.32 0.20 -1.65 16 22 C -0.19 -8.11 9.96 30.62 0.30 -7.80 16 23 C -0.17 -7.93 9.41 30.62 0.29 -7.65 16 24 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 25 H 0.04 2.06 8.13 -2.39 -0.02 2.04 16 26 H 0.00 0.16 8.09 -2.39 -0.02 0.14 16 27 H 0.33 12.18 8.79 -89.69 -0.79 11.39 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.38 9.62 8.62 -74.06 -0.64 8.98 16 31 H 0.07 1.31 8.00 -2.38 -0.02 1.29 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.27 6.85 -2.39 -0.02 1.25 16 35 H 0.05 1.25 7.89 -2.39 -0.02 1.23 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16 42 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 45 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -61.32 356.01 0.12 -61.20 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.48 Total: 31.09 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.11 Total: -39.71 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.93 Total: -81.88 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.60 Total: -17.72 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -61.32 0.12 -61.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566123833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.748 kcal (2) G-P(sol) polarization free energy of solvation -61.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds