Wall clock time and date at job start Mon Mar 30 2020 07:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48492 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46990 * 299.99948 * 3 2 1 6 6 H 1.48503 * 109.47010 * 60.00067 * 3 2 1 7 7 C 1.37881 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99279 * 173.59871 * 7 2 1 9 9 C 1.50700 * 120.00151 * 353.59620 * 7 2 1 10 10 C 1.53001 * 115.54806 * 85.44879 * 9 7 2 11 11 N 1.46897 * 109.46952 * 65.04653 * 10 9 7 12 12 C 1.46912 * 110.99774 * 185.35159 * 11 10 9 13 13 C 1.53001 * 109.47098 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47304 * 305.00146 * 13 12 11 15 15 O 1.42903 * 109.46846 * 64.99895 * 13 12 11 16 16 C 1.52997 * 109.47047 * 184.99886 * 13 12 11 17 17 C 1.52996 * 109.46972 * 175.00288 * 16 13 12 18 18 C 1.54266 * 110.48585 * 184.99964 * 17 16 13 19 19 C 1.53872 * 106.64372 * 217.73629 * 18 17 16 20 20 C 1.54273 * 106.59718 * 359.97302 * 19 18 17 21 21 C 1.54886 * 104.19378 * 23.61337 * 20 19 18 22 22 C 1.52994 * 117.49915 * 231.11472 * 9 7 2 23 23 C 1.52994 * 117.50027 * 299.77657 * 9 7 2 24 24 H 0.96994 * 120.00174 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46958 * 305.05106 * 10 9 7 26 26 H 1.08999 * 109.47129 * 185.04863 * 10 9 7 27 27 H 1.00900 * 111.00312 * 61.39932 * 11 10 9 28 28 H 1.08996 * 109.46835 * 59.99975 * 12 11 10 29 29 H 1.08996 * 109.46709 * 299.99857 * 12 11 10 30 30 H 0.96698 * 113.99884 * 59.99947 * 15 13 12 31 31 H 1.08996 * 109.47315 * 54.99764 * 16 13 12 32 32 H 1.09010 * 109.47042 * 294.99923 * 16 13 12 33 33 H 1.08997 * 110.53769 * 307.61134 * 17 16 13 34 34 H 1.08997 * 110.03629 * 98.42391 * 18 17 16 35 35 H 1.08999 * 110.03196 * 337.04387 * 18 17 16 36 36 H 1.09000 * 110.03685 * 119.26257 * 19 18 17 37 37 H 1.09006 * 110.03480 * 240.69355 * 19 18 17 38 38 H 1.08998 * 110.48343 * 142.28709 * 20 19 18 39 39 H 1.09002 * 110.48273 * 264.93362 * 20 19 18 40 40 H 1.09001 * 110.75880 * 80.37059 * 21 20 19 41 41 H 1.08994 * 110.75660 * 203.56167 * 21 20 19 42 42 H 1.09003 * 117.50223 * 215.00633 * 22 9 7 43 43 H 1.09004 * 117.49944 * 0.02947 * 22 9 7 44 44 H 1.09001 * 117.50172 * 359.97438 * 23 9 7 45 45 H 1.09001 * 117.50111 * 144.97369 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0795 -1.1970 -0.1037 9 6 1.2581 -2.4951 0.1467 10 6 0.7038 -3.0871 -1.1507 11 7 1.8170 -3.4590 -2.0340 12 6 1.3229 -3.9138 -3.3407 13 6 2.5085 -4.2909 -4.2312 14 1 3.1967 -3.4481 -4.2961 15 8 3.1862 -5.4171 -3.6704 16 6 2.0026 -4.6451 -5.6310 17 6 3.1951 -4.9011 -6.5546 18 6 2.7161 -5.1379 -8.0017 19 6 3.6228 -6.2318 -8.5926 20 6 4.6224 -6.6219 -7.4842 21 6 3.9068 -6.2228 -6.1698 22 6 1.7457 -3.4729 1.2176 23 6 0.4401 -2.7007 1.4231 24 1 -0.4850 0.8400 -0.0004 25 1 0.0764 -2.3477 -1.6485 26 1 0.1103 -3.9722 -0.9217 27 1 2.4009 -4.1607 -1.6041 28 1 0.7545 -3.1126 -3.8130 29 1 0.6801 -4.7833 -3.2034 30 1 2.6330 -6.2054 -3.5828 31 1 1.4100 -3.8187 -6.0231 32 1 1.3851 -5.5419 -5.5779 33 1 3.8947 -4.0661 -6.5161 34 1 2.8119 -4.2201 -8.5817 35 1 1.6788 -5.4726 -8.0016 36 1 3.0256 -7.0977 -8.8785 37 1 4.1587 -5.8447 -9.4593 38 1 4.8141 -7.6947 -7.5037 39 1 5.5527 -6.0650 -7.5964 40 1 3.1802 -6.9818 -5.8798 41 1 4.6299 -6.0573 -5.3712 42 1 1.6716 -4.5380 0.9980 43 1 2.6062 -3.1750 1.8168 44 1 0.4422 -1.8952 2.1575 45 1 -0.4932 -3.2574 1.3387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566123837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:26 Heat of formation + Delta-G solvation = -55.400864 kcal Electronic energy + Delta-G solvation = -20704.242657 eV Core-core repulsion = 17720.969710 eV Total energy + Delta-G solvation = -2983.272947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.04573 -37.32378 -36.50581 -33.73484 -31.87394 -31.73490 -28.73154 -28.35151 -25.74075 -24.83431 -22.74338 -21.38283 -20.92571 -20.56363 -19.80490 -18.91495 -16.50902 -16.37223 -15.72238 -15.51055 -14.86714 -14.64342 -14.37897 -13.96279 -13.62063 -13.41911 -13.33756 -13.12463 -12.60555 -12.15718 -11.69805 -11.55642 -11.35646 -11.25843 -11.16734 -11.00340 -10.90358 -10.82044 -10.65864 -10.59864 -10.49906 -10.44250 -10.38079 -10.12595 -9.70964 -9.26527 -8.73441 -8.31882 -8.00169 -7.47327 -5.90912 -3.91766 3.36421 3.44349 3.49928 4.33157 4.52209 4.54109 4.57178 4.61761 4.82071 5.11897 5.28882 5.29823 5.35266 5.39374 5.46522 5.49666 5.55191 5.57217 5.61362 5.71778 5.72917 5.84434 5.86924 6.02100 6.03426 6.08101 6.19200 6.21775 6.28768 6.34725 6.38961 6.47407 6.55148 6.69342 6.79505 6.93784 7.16842 7.52582 7.63637 7.79786 8.01404 8.03116 8.26978 8.62366 9.07876 9.71069 11.19130 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.003739 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.442938 B = 7486.244972 C = 8036.574557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.467 4.467 8 H 0.060 0.940 9 C 0.053 3.947 10 C 0.108 3.892 11 N -0.665 5.665 12 C 0.030 3.970 13 C 0.110 3.890 14 H 0.107 0.893 15 O -0.555 6.555 16 C -0.142 4.142 17 C -0.086 4.086 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.215 4.215 23 C -0.160 4.160 24 H 0.256 0.744 25 H 0.074 0.926 26 H -0.009 1.009 27 H 0.336 0.664 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.364 0.636 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 -12.565 -13.823 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.021 4.021 11 N -0.295 5.295 12 C -0.100 4.100 13 C 0.051 3.949 14 H 0.125 0.875 15 O -0.359 6.359 16 C -0.181 4.181 17 C -0.105 4.105 18 C -0.161 4.161 19 C -0.162 4.162 20 C -0.167 4.167 21 C -0.148 4.148 22 C -0.252 4.252 23 C -0.198 4.198 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.009 0.991 27 H 0.154 0.846 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.210 0.790 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.099 -11.354 -14.032 18.510 hybrid contribution -0.690 -0.250 0.158 0.751 sum 3.408 -11.605 -13.874 18.406 Atomic orbital electron populations 1.70026 1.05800 1.25955 1.50750 1.24948 0.94762 0.98731 0.95134 0.86600 0.80376 0.84106 0.77283 1.19750 1.21269 1.21306 1.20370 0.92908 0.88396 1.48824 0.92186 1.18814 0.97044 0.93727 0.85180 1.21541 0.90673 0.95641 0.94239 1.60201 1.21579 1.45062 1.02698 1.22617 0.95926 0.98409 0.93039 1.22042 0.94360 0.88859 0.89677 0.87533 1.86631 1.41560 1.22459 1.85291 1.22320 0.97731 1.01959 0.96061 1.21935 0.96655 0.98434 0.93437 1.22235 0.99281 0.98508 0.96049 1.22128 0.97537 0.98413 0.98151 1.22418 0.98358 1.00493 0.95458 1.22566 0.99397 0.96133 0.96752 1.22984 0.98463 0.95421 1.08378 1.22519 0.91938 1.01188 1.04127 0.93459 0.90762 0.99071 0.84640 0.90780 0.96646 0.78987 0.91008 0.91915 0.90786 0.92137 0.91999 0.92268 0.92313 0.92149 0.91909 0.92131 0.90228 0.92243 0.90522 0.90086 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 12.92 55.43 0.72 -24.76 16 2 C 0.07 1.83 5.39 -17.81 -0.10 1.73 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.47 -12.96 8.74 -34.44 -0.30 -13.26 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.05 1.32 1.55 -155.67 -0.24 1.08 16 10 C 0.11 2.44 5.51 -3.83 -0.02 2.42 16 11 N -0.66 -13.13 6.38 -113.77 -0.73 -13.85 16 12 C 0.03 0.48 5.35 -3.82 -0.02 0.45 16 13 C 0.11 1.43 3.20 -26.73 -0.09 1.35 16 14 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 15 O -0.56 -7.00 10.36 -35.23 -0.37 -7.36 16 16 C -0.14 -1.50 4.36 -26.73 -0.12 -1.62 16 17 C -0.09 -0.87 2.86 -88.92 -0.25 -1.12 16 18 C -0.12 -1.11 6.37 -25.61 -0.16 -1.27 16 19 C -0.12 -1.04 6.80 -25.61 -0.17 -1.22 16 20 C -0.13 -1.14 6.83 -25.07 -0.17 -1.31 16 21 C -0.11 -1.08 4.93 -24.70 -0.12 -1.20 16 22 C -0.22 -4.78 9.96 -26.70 -0.27 -5.05 16 23 C -0.16 -3.83 9.41 -26.70 -0.25 -4.08 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.07 1.88 8.13 -51.93 -0.42 1.45 16 26 H -0.01 -0.19 8.09 -51.93 -0.42 -0.61 16 27 H 0.34 6.43 8.35 -39.29 -0.33 6.11 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.36 3.51 9.05 45.56 0.41 3.92 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.61 8.02 -51.92 -0.42 0.19 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 7.84 -51.93 -0.41 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.56 7.97 -51.93 -0.41 0.15 16 41 H 0.08 0.88 7.19 -51.93 -0.37 0.50 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 44 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -28.88 356.51 -10.14 -39.02 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.83 Total: 7.98 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -2.28 Total: -23.08 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.01 Total: -38.61 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.37 Total: -7.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.88 -10.14 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566123837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.378 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds