Wall clock time and date at job start Mon Mar 30 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48492 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46990 * 299.99948 * 3 2 1 6 6 H 1.48503 * 109.47010 * 60.00067 * 3 2 1 7 7 C 1.37881 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99279 * 173.59871 * 7 2 1 9 9 C 1.50700 * 120.00151 * 353.59620 * 7 2 1 10 10 C 1.53001 * 115.54806 * 85.44879 * 9 7 2 11 11 N 1.46897 * 109.46952 * 65.04653 * 10 9 7 12 12 C 1.46912 * 110.99774 * 185.35159 * 11 10 9 13 13 C 1.53001 * 109.47098 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47304 * 305.00146 * 13 12 11 15 15 O 1.42903 * 109.46846 * 64.99895 * 13 12 11 16 16 C 1.52997 * 109.47047 * 184.99886 * 13 12 11 17 17 C 1.52996 * 109.46972 * 175.00288 * 16 13 12 18 18 C 1.54266 * 110.48585 * 184.99964 * 17 16 13 19 19 C 1.53872 * 106.64372 * 217.73629 * 18 17 16 20 20 C 1.54273 * 106.59718 * 359.97302 * 19 18 17 21 21 C 1.54886 * 104.19378 * 23.61337 * 20 19 18 22 22 C 1.52994 * 117.49915 * 231.11472 * 9 7 2 23 23 C 1.52994 * 117.50027 * 299.77657 * 9 7 2 24 24 H 0.96994 * 120.00174 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46958 * 305.05106 * 10 9 7 26 26 H 1.08999 * 109.47129 * 185.04863 * 10 9 7 27 27 H 1.00900 * 111.00312 * 61.39932 * 11 10 9 28 28 H 1.08996 * 109.46835 * 59.99975 * 12 11 10 29 29 H 1.08996 * 109.46709 * 299.99857 * 12 11 10 30 30 H 0.96698 * 113.99884 * 59.99947 * 15 13 12 31 31 H 1.08996 * 109.47315 * 54.99764 * 16 13 12 32 32 H 1.09010 * 109.47042 * 294.99923 * 16 13 12 33 33 H 1.08997 * 110.53769 * 307.61134 * 17 16 13 34 34 H 1.08997 * 110.03629 * 98.42391 * 18 17 16 35 35 H 1.08999 * 110.03196 * 337.04387 * 18 17 16 36 36 H 1.09000 * 110.03685 * 119.26257 * 19 18 17 37 37 H 1.09006 * 110.03480 * 240.69355 * 19 18 17 38 38 H 1.08998 * 110.48343 * 142.28709 * 20 19 18 39 39 H 1.09002 * 110.48273 * 264.93362 * 20 19 18 40 40 H 1.09001 * 110.75880 * 80.37059 * 21 20 19 41 41 H 1.08994 * 110.75660 * 203.56167 * 21 20 19 42 42 H 1.09003 * 117.50223 * 215.00633 * 22 9 7 43 43 H 1.09004 * 117.49944 * 0.02947 * 22 9 7 44 44 H 1.09001 * 117.50172 * 359.97438 * 23 9 7 45 45 H 1.09001 * 117.50111 * 144.97369 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0795 -1.1970 -0.1037 9 6 1.2581 -2.4951 0.1467 10 6 0.7038 -3.0871 -1.1507 11 7 1.8170 -3.4590 -2.0340 12 6 1.3229 -3.9138 -3.3407 13 6 2.5085 -4.2909 -4.2312 14 1 3.1967 -3.4481 -4.2961 15 8 3.1862 -5.4171 -3.6704 16 6 2.0026 -4.6451 -5.6310 17 6 3.1951 -4.9011 -6.5546 18 6 2.7161 -5.1379 -8.0017 19 6 3.6228 -6.2318 -8.5926 20 6 4.6224 -6.6219 -7.4842 21 6 3.9068 -6.2228 -6.1698 22 6 1.7457 -3.4729 1.2176 23 6 0.4401 -2.7007 1.4231 24 1 -0.4850 0.8400 -0.0004 25 1 0.0764 -2.3477 -1.6485 26 1 0.1103 -3.9722 -0.9217 27 1 2.4009 -4.1607 -1.6041 28 1 0.7545 -3.1126 -3.8130 29 1 0.6801 -4.7833 -3.2034 30 1 2.6330 -6.2054 -3.5828 31 1 1.4100 -3.8187 -6.0231 32 1 1.3851 -5.5419 -5.5779 33 1 3.8947 -4.0661 -6.5161 34 1 2.8119 -4.2201 -8.5817 35 1 1.6788 -5.4726 -8.0016 36 1 3.0256 -7.0977 -8.8785 37 1 4.1587 -5.8447 -9.4593 38 1 4.8141 -7.6947 -7.5037 39 1 5.5527 -6.0650 -7.5964 40 1 3.1802 -6.9818 -5.8798 41 1 4.6299 -6.0573 -5.3712 42 1 1.6716 -4.5380 0.9980 43 1 2.6062 -3.1750 1.8168 44 1 0.4422 -1.8952 2.1575 45 1 -0.4932 -3.2574 1.3387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566123837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:25 Heat of formation + Delta-G solvation = -72.947138 kcal Electronic energy + Delta-G solvation = -20705.003521 eV Core-core repulsion = 17720.969710 eV Total energy + Delta-G solvation = -2984.033810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96887 -38.80289 -37.78560 -35.21537 -33.88477 -32.74505 -29.54287 -29.42942 -27.62294 -26.33240 -24.10502 -22.86739 -22.39191 -21.28456 -20.85879 -20.58051 -18.15211 -17.41115 -17.17976 -16.53996 -16.41707 -16.02063 -15.59953 -15.24683 -15.15239 -14.98726 -14.27743 -14.12337 -14.04730 -13.53871 -13.20309 -12.97985 -12.88399 -12.63637 -12.57592 -12.32813 -12.27010 -12.01946 -11.97156 -11.82625 -11.69758 -11.46193 -11.37174 -11.29790 -11.18977 -10.73194 -10.59455 -10.32644 -9.90266 -9.02204 -8.03776 -6.09739 1.40975 1.43732 1.54767 2.48032 3.18504 3.26185 3.57089 3.69035 3.78376 3.81535 3.88631 4.17742 4.22937 4.35696 4.37800 4.49088 4.55984 4.63495 4.68300 4.71765 4.75415 4.78033 4.82907 4.87683 4.94533 4.96685 4.99778 5.07507 5.09594 5.16420 5.20269 5.28198 5.31660 5.37073 5.48101 5.56644 5.63796 5.64399 5.75555 5.88460 6.37655 6.52954 6.78316 6.93820 6.95423 7.55378 9.05456 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.003739 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.442938 B = 7486.244972 C = 8036.574557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.480 4.480 8 H 0.045 0.955 9 C 0.025 3.975 10 C 0.123 3.877 11 N -0.679 5.679 12 C 0.032 3.968 13 C 0.123 3.877 14 H 0.082 0.918 15 O -0.562 6.562 16 C -0.132 4.132 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.108 4.108 22 C -0.188 4.188 23 C -0.166 4.166 24 H 0.256 0.744 25 H 0.040 0.960 26 H 0.005 0.995 27 H 0.340 0.660 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.380 0.620 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -14.013 -14.738 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.024 3.976 10 C -0.006 4.006 11 N -0.310 5.310 12 C -0.097 4.097 13 C 0.064 3.936 14 H 0.100 0.900 15 O -0.369 6.369 16 C -0.171 4.171 17 C -0.106 4.106 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.168 4.168 21 C -0.145 4.145 22 C -0.226 4.226 23 C -0.204 4.204 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.023 0.977 27 H 0.159 0.841 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.228 0.772 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.383 -12.820 -14.951 20.177 hybrid contribution -0.750 0.161 0.456 0.892 sum 3.633 -12.659 -14.495 19.585 Atomic orbital electron populations 1.70119 1.06837 1.26528 1.51657 1.25584 0.95526 1.01567 0.95096 0.85711 0.79227 0.80619 0.77286 1.19553 1.21021 1.20847 1.20578 0.92450 0.90194 1.48617 0.93651 1.18935 0.98105 0.93922 0.86599 1.21180 0.91009 0.95063 0.93330 1.60086 1.21088 1.46137 1.03707 1.22679 0.97170 0.98583 0.91302 1.21773 0.92669 0.88563 0.90593 0.89984 1.86609 1.42034 1.22893 1.85337 1.22219 0.98010 1.02574 0.94259 1.21908 0.96200 0.98210 0.94240 1.22222 0.99739 0.98878 0.95097 1.22130 0.97398 0.98488 0.98068 1.22424 0.98233 1.01030 0.95069 1.22514 0.99218 0.96043 0.96761 1.22967 0.97130 0.96453 1.06001 1.22438 0.93418 1.01282 1.03273 0.93524 0.94180 0.97671 0.84122 0.92019 0.94742 0.77213 0.91101 0.90319 0.92263 0.92133 0.91402 0.91385 0.91815 0.91239 0.92327 0.91315 0.91823 0.89302 0.90721 0.92470 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.10 12.92 21.45 0.28 -52.82 16 2 C 0.02 1.18 5.39 84.65 0.46 1.64 16 3 Si 0.94 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.48 -26.90 8.74 25.60 0.22 -26.68 16 8 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 9 C 0.03 1.24 1.55 -52.93 -0.08 1.16 16 10 C 0.12 5.54 5.51 86.30 0.48 6.02 16 11 N -0.68 -26.40 6.38 -513.87 -3.28 -29.68 16 12 C 0.03 0.98 5.35 86.30 0.46 1.44 16 13 C 0.12 3.11 3.20 30.59 0.10 3.21 16 14 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 15 O -0.56 -13.26 10.36 -148.98 -1.54 -14.81 16 16 C -0.13 -2.58 4.36 30.59 0.13 -2.44 16 17 C -0.09 -1.64 2.86 -9.69 -0.03 -1.67 16 18 C -0.12 -1.96 6.37 31.32 0.20 -1.76 16 19 C -0.12 -1.79 6.80 31.32 0.21 -1.58 16 20 C -0.13 -2.05 6.83 31.67 0.22 -1.83 16 21 C -0.11 -1.92 4.93 31.91 0.16 -1.76 16 22 C -0.19 -8.08 9.96 30.62 0.30 -7.77 16 23 C -0.17 -7.90 9.41 30.62 0.29 -7.61 16 24 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.04 2.05 8.13 -2.38 -0.02 2.03 16 26 H 0.01 0.22 8.09 -2.39 -0.02 0.20 16 27 H 0.34 12.60 8.35 -89.69 -0.75 11.85 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.38 6.34 9.05 -74.06 -0.67 5.67 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.31 8.02 -2.38 -0.02 1.29 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.02 7.84 -2.39 -0.02 1.00 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.10 7.97 -2.39 -0.02 1.09 16 41 H 0.06 1.34 7.19 -2.39 -0.02 1.32 16 42 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.07 3.21 8.14 -2.38 -0.02 3.20 16 44 H 0.06 2.95 8.14 -2.39 -0.02 2.94 16 45 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -61.46 356.51 0.12 -61.34 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.48 Total: 28.60 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 3.12 Total: -39.63 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -3.00 Total: -82.50 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.54 Total: -14.81 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -61.46 0.12 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566123837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.612 kcal (2) G-P(sol) polarization free energy of solvation -61.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds