Wall clock time and date at job start Mon Mar 30 2020 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00339 * 2 1 4 4 H 1.48502 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47280 * 299.99915 * 3 2 1 6 6 H 1.48499 * 109.47036 * 60.00107 * 3 2 1 7 7 C 1.37884 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47287 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47215 * 179.97438 * 12 11 10 14 14 O 1.21273 * 119.99837 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99802 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99536 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47062 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99591 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47333 * 60.00627 * 9 7 2 25 25 H 1.09001 * 109.47348 * 299.99554 * 9 7 2 26 26 H 1.08995 * 109.46922 * 59.99883 * 10 9 7 27 27 H 1.09000 * 109.47141 * 299.99880 * 10 9 7 28 28 H 1.08999 * 109.46784 * 59.99779 * 11 10 9 29 29 H 1.09000 * 109.46864 * 300.00036 * 11 10 9 30 30 H 1.09006 * 109.46951 * 60.00442 * 12 11 10 31 31 H 1.09005 * 109.47389 * 300.00372 * 12 11 10 32 32 H 0.96999 * 120.00320 * 0.02562 * 15 13 12 33 33 H 1.09001 * 109.47202 * 60.00766 * 16 15 13 34 34 H 1.09000 * 109.47169 * 300.00155 * 16 15 13 35 35 H 1.08995 * 109.46922 * 60.00035 * 17 16 15 36 36 H 1.09000 * 109.47141 * 300.00032 * 17 16 15 37 37 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 38 38 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 39 39 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 40 40 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 41 41 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 42 42 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 43 43 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 44 44 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 45 45 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 6 2.4741 -6.1501 -0.0018 13 6 1.7206 -7.4552 -0.0018 14 8 0.5078 -7.4551 -0.0018 15 7 2.3944 -8.6224 -0.0018 16 6 1.6618 -9.8911 -0.0013 17 6 2.6560 -11.0541 -0.0007 18 6 1.8909 -12.3790 -0.0008 19 6 1.2177 -12.6293 -1.3739 20 6 1.0421 -14.1608 -1.4346 21 6 2.0891 -14.7625 -0.4811 22 6 2.8659 -13.5759 0.1260 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8717 -3.6045 0.8894 27 1 2.8717 -3.6045 -0.8905 28 1 0.8537 -5.0445 -0.8914 29 1 0.8531 -5.0451 0.8886 30 1 3.1008 -6.0929 0.8883 31 1 3.1009 -6.0920 -0.8918 32 1 3.3644 -8.6225 -0.0014 33 1 1.0349 -9.9490 -0.8911 34 1 1.0355 -9.9486 0.8890 35 1 3.2826 -10.9960 0.8892 36 1 3.2827 -10.9968 -0.8907 37 1 1.1517 -12.3966 0.8000 38 1 1.8630 -12.2870 -2.1830 39 1 0.2489 -12.1321 -1.4210 40 1 1.2141 -14.5165 -2.4505 41 1 0.0388 -14.4347 -1.1082 42 1 1.5940 -15.3278 0.3085 43 1 2.7689 -15.4109 -1.0340 44 1 3.0994 -13.7685 1.1731 45 1 3.7788 -13.3884 -0.4392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588149469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:22 Heat of formation + Delta-G solvation = -96.022594 kcal Electronic energy + Delta-G solvation = -19345.627076 eV Core-core repulsion = 16360.592639 eV Total energy + Delta-G solvation = -2985.034437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71892 -38.72011 -35.42553 -34.73614 -32.63577 -31.97817 -29.72987 -29.09347 -27.31211 -25.41049 -23.11773 -22.02066 -20.71236 -20.52621 -19.97883 -19.84552 -16.81049 -16.35776 -16.15544 -15.94136 -15.81772 -15.07345 -14.90672 -14.42002 -13.93655 -13.78733 -13.54040 -13.32499 -12.59518 -12.49204 -12.15925 -11.78209 -11.71765 -11.64105 -11.57202 -11.46294 -11.23401 -10.97342 -10.95233 -10.85106 -10.80277 -10.50177 -10.46329 -10.37740 -9.75434 -9.58161 -9.18664 -9.10988 -8.94150 -8.28587 -5.93204 -3.95525 2.78875 3.17423 3.34550 3.41614 3.45689 4.11846 4.22995 4.31510 4.50777 4.66640 4.78308 4.93279 5.03704 5.07255 5.15087 5.19152 5.26422 5.32707 5.38150 5.40999 5.41914 5.42810 5.52122 5.56544 5.69634 5.75143 5.75435 5.84973 5.92824 5.98160 6.04184 6.18103 6.34377 6.38475 6.59057 6.88022 7.06126 7.23472 7.49179 7.77077 7.93183 8.08661 8.32589 8.50526 9.12505 9.67973 11.18156 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.072544 B = 0.002096 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.881941 B =13352.864723 C =13564.314862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.510 3.490 14 O -0.536 6.536 15 N -0.740 5.740 16 C 0.118 3.882 17 C -0.123 4.123 18 C -0.090 4.090 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.120 4.120 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -29.705 -0.807 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.412 6.412 15 N -0.394 5.394 16 C -0.006 4.006 17 C -0.160 4.160 18 C -0.109 4.109 19 C -0.160 4.160 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.157 4.157 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.517 -29.594 -0.811 30.314 hybrid contribution 0.904 0.873 -0.004 1.256 sum 7.421 -28.722 -0.815 29.676 Atomic orbital electron populations 1.69991 1.06040 1.26360 1.51068 1.25055 0.94851 0.99248 0.95513 0.86552 0.80069 0.83928 0.77524 1.19793 1.21072 1.21066 1.21329 0.93024 0.91202 1.50195 0.92696 1.19108 0.94091 0.91298 0.97330 1.21651 0.99068 0.94034 1.00047 1.21447 0.97037 0.92722 1.02936 1.21794 1.00075 0.92095 1.03916 1.21105 0.88457 0.85641 0.75032 1.90702 1.14296 1.87722 1.48507 1.46125 1.10217 1.05839 1.77199 1.21332 0.94734 0.82177 1.02340 1.21797 0.98090 0.93428 1.02733 1.22085 0.97365 0.93347 0.98113 1.22489 1.00909 0.95690 0.96941 1.22135 0.99145 0.95585 0.99531 1.22126 0.97755 0.97729 0.98718 1.22407 0.98162 0.94367 1.00789 0.93122 0.96572 0.96579 0.93488 0.93497 0.91836 0.91832 0.89202 0.89193 0.76742 0.91583 0.91772 0.91200 0.91173 0.90256 0.91457 0.91408 0.91963 0.91900 0.91952 0.91987 0.91693 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C 0.51 7.32 7.83 -10.98 -0.09 7.23 16 14 O -0.54 -10.12 15.98 5.56 0.09 -10.03 16 15 N -0.74 -7.54 5.56 -60.29 -0.33 -7.88 16 16 C 0.12 1.10 5.57 -4.04 -0.02 1.08 16 17 C -0.12 -0.77 4.83 -26.73 -0.13 -0.90 16 18 C -0.09 -0.56 2.86 -88.59 -0.25 -0.81 16 19 C -0.12 -0.80 5.71 -25.03 -0.14 -0.95 16 20 C -0.13 -0.75 6.80 -25.61 -0.17 -0.93 16 21 C -0.13 -0.69 6.80 -25.62 -0.17 -0.87 16 22 C -0.12 -0.66 6.27 -25.07 -0.16 -0.82 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.40 2.83 8.47 -40.82 -0.35 2.49 16 33 H 0.07 0.69 7.66 -51.93 -0.40 0.30 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.41 8.00 -51.93 -0.42 0.00 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.44 7.95 -51.93 -0.41 0.03 16 39 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.35 8.05 -51.93 -0.42 -0.06 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -33.83 361.73 -9.90 -43.73 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -8.71 Total: -4.23 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.11 Total: -17.06 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.40 Total: -34.92 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.83 -9.90 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.296 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds