Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00339 * 2 1 4 4 H 1.48502 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47280 * 299.99915 * 3 2 1 6 6 H 1.48499 * 109.47036 * 60.00107 * 3 2 1 7 7 C 1.37884 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47287 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47215 * 179.97438 * 12 11 10 14 14 O 1.21273 * 119.99837 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99802 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99536 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47062 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99591 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47333 * 60.00627 * 9 7 2 25 25 H 1.09001 * 109.47348 * 299.99554 * 9 7 2 26 26 H 1.08995 * 109.46922 * 59.99883 * 10 9 7 27 27 H 1.09000 * 109.47141 * 299.99880 * 10 9 7 28 28 H 1.08999 * 109.46784 * 59.99779 * 11 10 9 29 29 H 1.09000 * 109.46864 * 300.00036 * 11 10 9 30 30 H 1.09006 * 109.46951 * 60.00442 * 12 11 10 31 31 H 1.09005 * 109.47389 * 300.00372 * 12 11 10 32 32 H 0.96999 * 120.00320 * 0.02562 * 15 13 12 33 33 H 1.09001 * 109.47202 * 60.00766 * 16 15 13 34 34 H 1.09000 * 109.47169 * 300.00155 * 16 15 13 35 35 H 1.08995 * 109.46922 * 60.00035 * 17 16 15 36 36 H 1.09000 * 109.47141 * 300.00032 * 17 16 15 37 37 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 38 38 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 39 39 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 40 40 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 41 41 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 42 42 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 43 43 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 44 44 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 45 45 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 6 2.4741 -6.1501 -0.0018 13 6 1.7206 -7.4552 -0.0018 14 8 0.5078 -7.4551 -0.0018 15 7 2.3944 -8.6224 -0.0018 16 6 1.6618 -9.8911 -0.0013 17 6 2.6560 -11.0541 -0.0007 18 6 1.8909 -12.3790 -0.0008 19 6 1.2177 -12.6293 -1.3739 20 6 1.0421 -14.1608 -1.4346 21 6 2.0891 -14.7625 -0.4811 22 6 2.8659 -13.5759 0.1260 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8717 -3.6045 0.8894 27 1 2.8717 -3.6045 -0.8905 28 1 0.8537 -5.0445 -0.8914 29 1 0.8531 -5.0451 0.8886 30 1 3.1008 -6.0929 0.8883 31 1 3.1009 -6.0920 -0.8918 32 1 3.3644 -8.6225 -0.0014 33 1 1.0349 -9.9490 -0.8911 34 1 1.0355 -9.9486 0.8890 35 1 3.2826 -10.9960 0.8892 36 1 3.2827 -10.9968 -0.8907 37 1 1.1517 -12.3966 0.8000 38 1 1.8630 -12.2870 -2.1830 39 1 0.2489 -12.1321 -1.4210 40 1 1.2141 -14.5165 -2.4505 41 1 0.0388 -14.4347 -1.1082 42 1 1.5940 -15.3278 0.3085 43 1 2.7689 -15.4109 -1.0340 44 1 3.0994 -13.7685 1.1731 45 1 3.7788 -13.3884 -0.4392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588149469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = -116.213518 kcal Electronic energy + Delta-G solvation = -19346.502620 eV Core-core repulsion = 16360.592639 eV Total energy + Delta-G solvation = -2985.909981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79219 -39.29104 -36.74269 -36.08528 -34.60358 -32.81515 -31.35984 -29.56539 -28.31897 -26.97280 -24.38582 -23.22659 -21.83348 -21.42654 -21.03366 -20.63252 -18.42291 -17.85584 -17.08283 -16.97990 -16.64030 -16.45617 -15.98598 -15.60738 -15.09423 -14.78347 -14.53347 -14.16187 -14.11858 -13.67089 -13.57257 -13.27405 -13.07124 -12.83841 -12.44065 -12.31280 -12.17078 -12.14188 -12.12356 -11.92567 -11.80091 -11.46129 -11.37746 -11.35914 -11.34990 -11.24189 -11.14174 -10.72417 -10.55575 -10.07466 -8.18579 -6.30762 1.40609 1.41740 1.55247 1.67247 2.24704 2.42402 3.14066 3.61761 3.74482 3.81793 3.89059 4.06600 4.13684 4.16230 4.23043 4.46132 4.58851 4.62264 4.65442 4.67167 4.70448 4.76126 4.81336 4.85811 4.89403 4.90696 4.99837 5.12259 5.14646 5.19272 5.20643 5.26466 5.34241 5.36634 5.37650 5.50314 5.52751 5.55434 5.58476 5.78592 5.88493 6.25624 6.59828 6.88008 7.31182 7.38832 8.93896 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.072544 B = 0.002096 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.881941 B =13352.864723 C =13564.314862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.507 3.493 14 O -0.592 6.592 15 N -0.719 5.719 16 C 0.117 3.883 17 C -0.110 4.110 18 C -0.090 4.090 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.116 4.116 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.418 0.582 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.761 -30.358 -0.755 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.296 3.704 14 O -0.473 6.473 15 N -0.372 5.372 16 C -0.007 4.007 17 C -0.148 4.148 18 C -0.109 4.109 19 C -0.163 4.163 20 C -0.166 4.166 21 C -0.164 4.164 22 C -0.154 4.154 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.256 0.744 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.772 -30.290 -0.760 31.836 hybrid contribution -0.149 1.027 -0.027 1.039 sum 9.624 -29.262 -0.787 30.814 Atomic orbital electron populations 1.70147 1.08085 1.27674 1.51961 1.26122 0.95814 1.03819 0.94821 0.85309 0.79187 0.78317 0.77666 1.18045 1.20488 1.20471 1.21791 0.93781 0.92192 1.50092 0.91500 1.19076 0.94740 0.93887 0.94304 1.21451 0.97803 0.92687 1.01373 1.21249 0.97552 0.93781 1.00923 1.21675 0.98885 0.89440 1.06743 1.21245 0.87765 0.86932 0.74497 1.90691 1.16673 1.88490 1.51429 1.45940 1.11223 1.04977 1.75063 1.21387 0.95432 0.82808 1.01028 1.21718 0.97313 0.91772 1.03951 1.22075 0.97508 0.93790 0.97576 1.22499 1.00385 0.96088 0.97316 1.22151 0.99293 0.95171 0.99950 1.22142 0.97702 0.97877 0.98680 1.22392 0.98028 0.93666 1.01276 0.92871 0.99736 0.99738 0.91993 0.92008 0.94002 0.93990 0.86268 0.86273 0.74437 0.93003 0.93188 0.89816 0.89976 0.90970 0.91312 0.92641 0.91656 0.92215 0.91847 0.91340 0.91131 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.29 21.45 0.28 -59.29 16 2 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.96 5.15 30.60 0.16 -3.80 16 11 C -0.10 -3.58 4.50 30.59 0.14 -3.44 16 12 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 13 C 0.51 14.05 7.83 87.66 0.69 14.73 16 14 O -0.59 -22.92 15.98 -3.01 -0.05 -22.97 16 15 N -0.72 -13.19 5.56 -463.06 -2.57 -15.76 16 16 C 0.12 2.09 5.57 86.38 0.48 2.57 16 17 C -0.11 -1.15 4.83 30.59 0.15 -1.00 16 18 C -0.09 -1.01 2.86 -9.48 -0.03 -1.03 16 19 C -0.13 -1.56 5.71 31.70 0.18 -1.38 16 20 C -0.13 -1.42 6.80 31.32 0.21 -1.21 16 21 C -0.13 -1.20 6.80 31.32 0.21 -0.99 16 22 C -0.12 -1.04 6.27 31.67 0.20 -0.84 16 23 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 29 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.42 4.47 8.47 -92.71 -0.79 3.68 16 33 H 0.05 1.09 7.66 -2.39 -0.02 1.08 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.71 8.00 -2.39 -0.02 0.69 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.83 7.95 -2.39 -0.02 0.81 16 39 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 0.58 8.05 -2.39 -0.02 0.56 16 Total: -1.00 -75.86 361.73 3.23 -72.63 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.14 Total: 8.02 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 3.40 Total: -29.78 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.29 Total: -75.06 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.86 3.23 -72.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.588 kcal (2) G-P(sol) polarization free energy of solvation -75.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds