Wall clock time and date at job start Mon Mar 30 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47090 * 2 1 4 4 C 1.53004 * 109.47163 * 120.00173 * 2 1 3 5 5 C 1.52998 * 109.47053 * 174.99931 * 4 2 1 6 6 H 1.08999 * 109.47030 * 54.99829 * 5 4 2 7 7 N 1.46903 * 109.47273 * 294.99998 * 5 4 2 8 8 C 1.50700 * 109.46985 * 174.99688 * 5 4 2 9 9 N 1.29947 * 126.28585 * 74.97730 * 8 5 4 10 10 O 1.21296 * 110.25555 * 179.97438 * 9 8 5 11 11 C 1.33646 * 109.80961 * 0.02562 * 10 9 8 12 12 C 1.50696 * 126.55510 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47242 * 270.02928 * 12 11 10 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 N 1.31132 * 106.89551 * 0.22579 * 11 10 9 24 24 H 1.09000 * 109.47697 * 299.99903 * 1 2 3 25 25 H 1.09007 * 109.47249 * 60.00215 * 1 2 3 26 26 H 1.09007 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46964 * 239.99977 * 2 1 3 28 28 H 1.08999 * 109.47209 * 300.00052 * 3 2 1 29 29 H 1.09001 * 109.47235 * 60.00143 * 3 2 1 30 30 H 1.09005 * 109.47527 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47149 * 54.99784 * 4 2 1 32 32 H 1.08995 * 109.46974 * 295.00378 * 4 2 1 33 33 H 1.00899 * 110.99766 * 299.99923 * 7 5 4 34 34 H 1.00897 * 110.99795 * 63.95603 * 7 5 4 35 35 H 1.08996 * 109.47390 * 150.02898 * 12 11 10 36 36 H 1.09001 * 109.46948 * 30.02540 * 12 11 10 37 37 H 1.09001 * 109.47502 * 60.00161 * 13 12 11 38 38 H 1.09001 * 109.47289 * 299.99957 * 13 12 11 39 39 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 40 40 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9953 0.1611 1.0527 7 7 3.9490 -1.6896 0.0594 8 6 4.0773 -1.4303 2.4722 9 7 4.0018 -2.6795 2.8219 10 8 4.5065 -2.8414 3.9130 11 6 4.9654 -1.6753 4.3773 12 6 5.6588 -1.4442 5.6951 13 6 4.6187 -1.1145 6.7677 14 6 5.3228 -0.8793 8.1056 15 6 4.2983 -0.5551 9.1623 16 1 3.2499 -0.5200 8.9051 17 6 4.6995 -0.3025 10.4569 18 7 5.9761 -0.3448 10.7699 19 14 3.4297 0.1000 11.7665 20 1 2.0733 0.0852 11.1620 21 1 3.4997 -0.9115 12.8514 22 1 3.7065 1.4471 12.3271 23 7 4.6922 -0.7695 3.4693 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1584 2.1369 33 1 3.5618 -2.6157 0.1615 34 1 3.6730 -1.2770 -0.8190 35 1 6.3564 -0.6125 5.5978 36 1 6.2035 -2.3438 5.9817 37 1 3.9210 -1.9462 6.8652 38 1 4.0739 -0.2149 6.4812 39 1 5.8678 -1.7786 8.3924 40 1 6.0202 -0.0474 8.0079 41 1 6.2584 -0.1667 11.6806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593941943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:03 Heat of formation + Delta-G solvation = 28.552789 kcal Electronic energy + Delta-G solvation = -19889.836335 eV Core-core repulsion = 16806.663548 eV Total energy + Delta-G solvation = -3083.172787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.36650 -38.41534 -35.82830 -35.14124 -33.78125 -32.64288 -31.06343 -28.38353 -27.74962 -27.52702 -25.00512 -24.25199 -22.84828 -20.93108 -20.38130 -19.93459 -17.80241 -17.62109 -16.40151 -15.99309 -15.69856 -15.13816 -14.70050 -14.46831 -14.39399 -14.26865 -13.62458 -13.02339 -12.81447 -12.59850 -12.55393 -12.28485 -12.06398 -12.01398 -11.59683 -11.45668 -11.19826 -11.05030 -10.99048 -10.89420 -10.84152 -10.80979 -10.57072 -9.85874 -9.83731 -9.39917 -9.13380 -9.06046 -8.38849 -6.03849 -4.06247 1.36100 2.38066 3.07376 3.29851 3.37628 3.41732 3.54461 4.09042 4.37627 4.43636 4.48118 4.51357 4.53561 4.85259 5.02782 5.20448 5.25112 5.31531 5.32600 5.45535 5.51254 5.56897 5.58281 5.65678 5.68505 5.77454 5.80804 5.95607 6.00105 6.10577 6.17779 6.49795 6.63797 6.69225 6.94953 7.06394 7.60638 7.72243 7.94873 8.35825 8.36456 9.00230 9.58255 11.07500 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003300 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.598592 B = 8482.318465 C = 9228.764734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.148 4.148 5 C 0.186 3.814 6 H 0.112 0.888 7 N -0.837 5.837 8 C 0.176 3.824 9 N -0.388 5.388 10 O 0.071 5.929 11 C 0.206 3.794 12 C -0.033 4.033 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.488 5.488 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.348 0.652 34 H 0.349 0.651 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 -0.621 -21.778 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.211 4.211 4 C -0.188 4.188 5 C 0.073 3.927 6 H 0.130 0.870 7 N -0.369 5.369 8 C -0.098 4.098 9 N -0.097 5.097 10 O 0.014 5.986 11 C -0.014 4.014 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.221 5.221 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.906 -0.691 -22.078 22.865 hybrid contribution -1.590 0.137 0.807 1.788 sum -7.496 -0.554 -21.271 22.560 Atomic orbital electron populations 1.21828 0.94720 1.01832 1.02080 1.21099 0.96262 0.96636 0.97298 1.21942 1.01384 0.95548 1.02210 1.22475 0.95170 1.01688 0.99470 1.19592 0.92826 0.96793 0.83527 0.86979 1.58739 1.67858 1.06353 1.03946 1.25509 0.99113 0.86921 0.98246 1.74475 1.17968 1.19843 0.97452 1.85283 1.53818 1.35261 1.24227 1.29326 0.94266 0.79488 0.98328 1.20649 0.98400 1.04659 0.83498 1.21734 0.96648 1.00933 0.95159 1.19110 0.95874 0.97472 0.89003 1.21236 0.93506 1.47510 0.93713 0.92598 1.25005 0.95243 0.95458 0.98679 1.69959 1.14388 1.49674 1.19342 0.86537 0.81759 0.77994 0.81726 1.19756 1.20976 1.20980 1.71881 1.17659 1.30864 1.01738 0.92380 0.92462 0.92722 0.91350 0.92486 0.92180 0.92199 0.91309 0.90616 0.83896 0.83539 0.87446 0.88257 0.92585 0.92387 0.96056 0.96052 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 2 C -0.09 -0.68 2.79 -90.62 -0.25 -0.94 16 3 C -0.15 -1.11 8.95 37.15 0.33 -0.77 16 4 C -0.15 -1.42 4.31 -26.73 -0.12 -1.54 16 5 C 0.19 2.08 3.21 -68.86 -0.22 1.86 16 6 H 0.11 1.24 6.34 -51.93 -0.33 0.91 16 7 N -0.84 -8.08 9.17 -5.65 -0.05 -8.13 16 8 C 0.18 2.66 7.04 -156.37 -1.10 1.55 16 9 N -0.39 -6.17 12.03 30.90 0.37 -5.80 16 10 O 0.07 1.16 11.31 18.10 0.20 1.36 16 11 C 0.21 3.34 7.77 -13.06 -0.10 3.23 16 12 C -0.03 -0.52 5.84 -27.89 -0.16 -0.68 16 13 C -0.11 -2.05 5.14 -26.73 -0.14 -2.19 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 N -0.49 -8.14 11.55 -9.87 -0.11 -8.25 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.42 6.65 -51.93 -0.35 0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 6.46 -51.93 -0.34 0.10 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.35 3.36 8.88 -39.29 -0.35 3.01 16 34 H 0.35 2.45 7.44 -39.29 -0.29 2.16 16 35 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -30.51 339.67 -7.41 -37.92 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.69 Total: -0.12 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.97 Total: -12.92 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.94 Total: -47.70 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.51 -7.41 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593941943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.473 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds