Wall clock time and date at job start Mon Mar 30 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47090 * 2 1 4 4 C 1.53004 * 109.47163 * 120.00173 * 2 1 3 5 5 C 1.52998 * 109.47053 * 174.99931 * 4 2 1 6 6 H 1.08999 * 109.47030 * 54.99829 * 5 4 2 7 7 N 1.46903 * 109.47273 * 294.99998 * 5 4 2 8 8 C 1.50700 * 109.46985 * 174.99688 * 5 4 2 9 9 N 1.29947 * 126.28585 * 74.97730 * 8 5 4 10 10 O 1.21296 * 110.25555 * 179.97438 * 9 8 5 11 11 C 1.33646 * 109.80961 * 0.02562 * 10 9 8 12 12 C 1.50696 * 126.55510 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47242 * 270.02928 * 12 11 10 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 N 1.31132 * 106.89551 * 0.22579 * 11 10 9 24 24 H 1.09000 * 109.47697 * 299.99903 * 1 2 3 25 25 H 1.09007 * 109.47249 * 60.00215 * 1 2 3 26 26 H 1.09007 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46964 * 239.99977 * 2 1 3 28 28 H 1.08999 * 109.47209 * 300.00052 * 3 2 1 29 29 H 1.09001 * 109.47235 * 60.00143 * 3 2 1 30 30 H 1.09005 * 109.47527 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47149 * 54.99784 * 4 2 1 32 32 H 1.08995 * 109.46974 * 295.00378 * 4 2 1 33 33 H 1.00899 * 110.99766 * 299.99923 * 7 5 4 34 34 H 1.00897 * 110.99795 * 63.95603 * 7 5 4 35 35 H 1.08996 * 109.47390 * 150.02898 * 12 11 10 36 36 H 1.09001 * 109.46948 * 30.02540 * 12 11 10 37 37 H 1.09001 * 109.47502 * 60.00161 * 13 12 11 38 38 H 1.09001 * 109.47289 * 299.99957 * 13 12 11 39 39 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 40 40 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9953 0.1611 1.0527 7 7 3.9490 -1.6896 0.0594 8 6 4.0773 -1.4303 2.4722 9 7 4.0018 -2.6795 2.8219 10 8 4.5065 -2.8414 3.9130 11 6 4.9654 -1.6753 4.3773 12 6 5.6588 -1.4442 5.6951 13 6 4.6187 -1.1145 6.7677 14 6 5.3228 -0.8793 8.1056 15 6 4.2983 -0.5551 9.1623 16 1 3.2499 -0.5200 8.9051 17 6 4.6995 -0.3025 10.4569 18 7 5.9761 -0.3448 10.7699 19 14 3.4297 0.1000 11.7665 20 1 2.0733 0.0852 11.1620 21 1 3.4997 -0.9115 12.8514 22 1 3.7065 1.4471 12.3271 23 7 4.6922 -0.7695 3.4693 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1584 2.1369 33 1 3.5618 -2.6157 0.1615 34 1 3.6730 -1.2770 -0.8190 35 1 6.3564 -0.6125 5.5978 36 1 6.2035 -2.3438 5.9817 37 1 3.9210 -1.9462 6.8652 38 1 4.0739 -0.2149 6.4812 39 1 5.8678 -1.7786 8.3924 40 1 6.0202 -0.0474 8.0079 41 1 6.2584 -0.1667 11.6806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593941943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:03 Heat of formation + Delta-G solvation = 7.946864 kcal Electronic energy + Delta-G solvation = -19890.729875 eV Core-core repulsion = 16806.663548 eV Total energy + Delta-G solvation = -3084.066327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.60528 -39.21596 -37.17922 -36.44005 -35.03731 -34.19032 -32.55410 -29.46945 -29.17371 -28.09764 -26.02911 -25.97652 -24.16189 -22.38418 -21.63400 -20.75961 -19.05250 -18.82454 -18.37044 -17.01935 -16.59528 -16.36784 -16.08052 -15.96485 -15.44737 -15.03638 -14.68238 -14.36937 -14.07340 -13.89258 -13.68522 -13.31910 -13.14232 -12.96112 -12.94397 -12.73289 -12.64099 -12.50912 -12.42360 -12.11648 -11.89801 -11.67863 -11.60118 -11.56435 -11.48931 -11.26339 -10.81671 -10.52511 -9.87134 -8.18173 -6.27685 0.09848 1.16881 1.41428 1.42641 1.54749 1.80386 2.42721 2.49233 2.99879 3.16013 3.55247 3.65139 3.77365 3.83680 4.03484 4.14407 4.21345 4.22649 4.40987 4.50807 4.61897 4.71064 4.77572 4.79923 4.87470 4.89557 4.98451 4.99965 5.02248 5.03220 5.19149 5.21644 5.36371 5.41645 5.53968 5.75818 5.87777 5.92038 6.27018 6.41272 6.88641 7.11385 7.41106 8.93514 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003300 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.598592 B = 8482.318465 C = 9228.764734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.154 4.154 4 C -0.139 4.139 5 C 0.188 3.812 6 H 0.115 0.885 7 N -0.838 5.838 8 C 0.175 3.825 9 N -0.396 5.396 10 O 0.064 5.936 11 C 0.205 3.795 12 C -0.022 4.022 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.056 0.944 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.279 1.279 23 N -0.505 5.505 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.349 0.651 34 H 0.365 0.635 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.008 0.992 40 H 0.003 0.997 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.350 -0.512 -22.995 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.211 4.211 4 C -0.180 4.180 5 C 0.075 3.925 6 H 0.132 0.868 7 N -0.372 5.372 8 C -0.099 4.099 9 N -0.107 5.107 10 O 0.009 5.991 11 C -0.015 4.015 12 C -0.061 4.061 13 C -0.130 4.130 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.074 0.926 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.204 1.204 23 N -0.239 5.239 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.022 0.978 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.853 -0.588 -23.310 24.303 hybrid contribution -1.288 0.103 1.141 1.724 sum -8.141 -0.485 -22.169 23.622 Atomic orbital electron populations 1.21831 0.94361 1.01979 1.02294 1.21079 0.96478 0.96509 0.96562 1.21946 1.01287 0.95490 1.02379 1.22405 0.94031 1.01474 1.00067 1.19692 0.93557 0.96723 0.82533 0.86751 1.58697 1.67997 1.06306 1.04206 1.26214 0.98066 0.86613 0.99017 1.74469 1.18464 1.20337 0.97457 1.85268 1.54012 1.35293 1.24531 1.29266 0.94231 0.79594 0.98396 1.20483 0.97325 1.06019 0.82279 1.21426 0.97018 1.00660 0.93853 1.18994 0.95175 0.95970 0.91021 1.21694 0.94185 1.47356 0.94901 0.92617 1.25872 0.97227 0.95340 1.01058 1.70066 1.16237 1.50614 1.20035 0.85485 0.79372 0.77876 0.78836 1.18988 1.20354 1.20440 1.71897 1.18215 1.31392 1.02407 0.93284 0.91155 0.92632 0.89632 0.91104 0.93257 0.92337 0.91757 0.92410 0.83789 0.81695 0.86593 0.86251 0.92488 0.93107 0.97409 0.97811 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.11 2.79 -10.80 -0.03 -1.14 16 3 C -0.15 -1.97 8.95 71.98 0.64 -1.32 16 4 C -0.14 -2.54 4.31 30.60 0.13 -2.41 16 5 C 0.19 3.99 3.21 44.17 0.14 4.13 16 6 H 0.11 2.39 6.34 -2.39 -0.02 2.37 16 7 N -0.84 -14.68 9.17 -171.80 -1.58 -16.25 16 8 C 0.17 5.14 7.04 138.46 0.98 6.11 16 9 N -0.40 -12.30 12.03 -60.31 -0.73 -13.02 16 10 O 0.06 2.03 11.31 74.81 0.85 2.87 16 11 C 0.20 6.49 7.77 88.38 0.69 7.18 16 12 C -0.02 -0.68 5.84 29.85 0.17 -0.51 16 13 C -0.09 -3.50 5.14 30.60 0.16 -3.34 16 14 C 0.03 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 16 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.17 5.46 84.65 0.46 0.64 16 18 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 19 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 N -0.50 -16.51 11.55 -303.19 -3.50 -20.01 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.68 8.14 -2.38 -0.02 0.67 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.09 0.81 6.65 -2.39 -0.02 0.80 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.76 6.46 -2.38 -0.02 0.75 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.35 6.16 8.88 -89.69 -0.80 5.36 16 34 H 0.37 4.25 7.44 -89.70 -0.67 3.59 16 35 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -64.51 339.67 1.31 -63.20 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -0.44 Total: 12.49 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 4.39 Total: -20.29 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -5.52 Total: -104.01 kcal Atomic # 8 Polarization: 2.03 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.51 1.31 -63.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593941943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.147 kcal (2) G-P(sol) polarization free energy of solvation -64.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds