Wall clock time and date at job start Mon Mar 30 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 C 1.53004 * 109.47296 * 239.99868 * 2 1 3 5 5 C 1.50700 * 109.47253 * 119.99985 * 2 1 3 6 6 N 1.29954 * 126.28654 * 0.02728 * 5 2 1 7 7 O 1.21293 * 110.25286 * 180.02562 * 6 5 2 8 8 C 1.33642 * 109.81058 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55339 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47479 * 164.97011 * 9 8 7 11 11 N 1.46905 * 109.46943 * 44.97187 * 9 8 7 12 12 C 1.53004 * 109.47180 * 284.97546 * 9 8 7 13 13 C 1.52998 * 109.46930 * 184.99876 * 12 9 8 14 14 C 1.53004 * 109.46930 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.47510 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99939 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00501 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99903 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00251 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47350 * 90.00128 * 19 17 15 21 21 H 1.48509 * 109.46970 * 209.99951 * 19 17 15 22 22 H 1.48500 * 109.47165 * 329.99523 * 19 17 15 23 23 N 1.31130 * 106.90015 * 0.02562 * 8 7 6 24 24 H 1.08997 * 109.46820 * 300.00263 * 1 2 3 25 25 H 1.08998 * 109.46927 * 60.00166 * 1 2 3 26 26 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47618 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47257 * 300.00386 * 3 2 1 29 29 H 1.08997 * 109.47346 * 59.99508 * 3 2 1 30 30 H 1.09001 * 109.47254 * 300.00135 * 4 2 1 31 31 H 1.09006 * 109.46998 * 59.99821 * 4 2 1 32 32 H 1.08994 * 109.47251 * 179.97438 * 4 2 1 33 33 H 1.00906 * 111.00211 * 176.04639 * 11 9 8 34 34 H 1.00894 * 110.99923 * 299.99984 * 11 9 8 35 35 H 1.08997 * 109.47075 * 304.99615 * 12 9 8 36 36 H 1.09002 * 109.47075 * 64.99524 * 12 9 8 37 37 H 1.09007 * 109.47398 * 299.99370 * 13 12 9 38 38 H 1.08993 * 109.47698 * 59.99800 * 13 12 9 39 39 H 1.09001 * 109.46838 * 300.00195 * 14 13 12 40 40 H 1.09002 * 109.47075 * 59.99648 * 14 13 12 41 41 H 0.96992 * 119.99900 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.3011 -1.2480 2.1606 7 8 2.0056 -1.7411 3.0160 8 6 3.2922 -1.5599 2.7031 9 6 4.4837 -2.0210 3.5023 10 1 5.3788 -1.9703 2.8823 11 7 4.2713 -3.4061 3.9433 12 6 4.6583 -1.1177 4.7249 13 6 5.9380 -1.5067 5.4678 14 6 6.1129 -0.6030 6.6899 15 6 7.3730 -0.9864 7.4221 16 1 7.9879 -1.7938 7.0525 17 6 7.7415 -0.3061 8.5632 18 7 6.9930 0.6773 9.0131 19 14 9.3038 -0.7810 9.4704 20 1 10.4455 0.0024 8.9337 21 1 9.1427 -0.4926 10.9182 22 1 9.5653 -2.2305 9.2806 23 7 3.3198 -0.9043 1.5678 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2493 31 1 1.6767 -0.2075 -2.1393 32 1 3.1300 -0.7209 -1.2495 33 1 5.0833 -3.7604 4.4263 34 1 3.4468 -3.4794 4.5202 35 1 4.7271 -0.0788 4.4022 36 1 3.8022 -1.2358 5.3892 37 1 5.8692 -2.5456 5.7906 38 1 6.7940 -1.3885 4.8035 39 1 6.1818 0.4358 6.3668 40 1 5.2569 -0.7207 7.3544 41 1 7.2525 1.1562 9.8157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593941961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:15 Heat of formation + Delta-G solvation = 9.961415 kcal Electronic energy + Delta-G solvation = -20173.450933 eV Core-core repulsion = 17089.471963 eV Total energy + Delta-G solvation = -3083.978969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.64738 -38.74426 -38.48406 -35.96551 -35.38100 -33.38939 -32.42434 -29.52727 -28.39937 -28.27638 -26.93793 -25.58674 -24.68126 -22.91666 -21.83930 -20.33575 -19.12233 -18.45162 -18.35213 -17.46063 -16.51475 -16.36759 -16.10802 -15.39665 -15.19905 -15.13326 -14.80357 -14.40029 -14.06777 -13.71709 -13.48680 -13.44803 -13.14549 -12.93557 -12.72264 -12.64877 -12.56697 -12.51535 -12.42424 -12.37873 -12.18100 -11.98237 -11.79149 -11.49528 -11.42437 -11.21035 -10.96428 -10.55164 -9.87042 -8.19671 -6.30741 0.07628 1.16893 1.41727 1.42379 1.53429 1.74604 2.40849 2.44768 2.90439 3.14273 3.56185 3.64602 3.83689 3.85590 3.94370 4.03029 4.12126 4.42537 4.50957 4.61167 4.65572 4.66810 4.72129 4.76379 4.82885 4.88047 4.88115 4.99551 5.03581 5.16892 5.18997 5.24225 5.26890 5.31331 5.53120 5.73588 5.85943 5.93075 6.24083 6.41034 6.87753 7.10576 7.39235 8.92165 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.036284 B = 0.003175 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.511383 B = 8816.588609 C = 9070.418997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.175 3.825 6 N -0.403 5.403 7 O 0.067 5.933 8 C 0.203 3.797 9 C 0.198 3.802 10 H 0.133 0.867 11 N -0.835 5.835 12 C -0.140 4.140 13 C -0.093 4.093 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.259 1.259 23 N -0.493 5.493 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.370 0.630 34 H 0.352 0.648 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.062 0.938 39 H -0.014 1.014 40 H -0.010 1.010 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 -3.769 -19.033 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 C -0.193 4.193 4 C -0.190 4.190 5 C -0.098 4.098 6 N -0.113 5.113 7 O 0.013 5.987 8 C -0.018 4.018 9 C 0.084 3.916 10 H 0.151 0.849 11 N -0.369 5.369 12 C -0.181 4.181 13 C -0.131 4.131 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.577 5.577 19 Si 0.788 3.212 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.183 1.183 23 N -0.227 5.227 24 H 0.068 0.932 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.188 0.812 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.005 0.995 40 H 0.009 0.991 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.114 -3.655 -20.019 23.187 hybrid contribution 0.865 0.492 2.185 2.401 sum -10.248 -3.164 -17.833 20.810 Atomic orbital electron populations 1.21810 0.91412 1.02560 1.03378 1.19280 0.96908 0.95049 0.87135 1.21852 1.01604 0.92572 1.03260 1.21832 1.01597 0.99925 0.95644 1.26463 0.85073 0.99145 0.99142 1.74588 1.19235 1.15789 1.01737 1.85235 1.16722 1.57148 1.39622 1.29085 0.87619 0.93223 0.91885 1.19916 0.89099 0.89169 0.93419 0.84905 1.58914 1.11084 1.16372 1.50551 1.22364 0.99788 0.99913 0.96033 1.21422 0.95433 0.99880 0.96373 1.19012 0.95221 0.94182 0.93099 1.21742 1.08888 1.17408 1.09778 0.91563 1.26003 1.00566 0.94974 0.98548 1.70106 1.40222 1.23330 1.24019 0.85464 0.79151 0.79225 0.77324 1.19963 1.21120 1.18325 1.71811 1.21004 1.18255 1.11635 0.93169 0.88456 0.92798 0.92405 0.88323 0.93539 0.93106 0.88412 0.92355 0.81221 0.83393 0.92310 0.91603 0.91265 0.91954 0.99549 0.99131 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.97 71.98 0.57 -1.67 16 2 C 0.02 0.36 0.99 -52.93 -0.05 0.31 16 3 C -0.13 -2.37 8.46 71.98 0.61 -1.76 16 4 C -0.13 -2.14 8.46 71.98 0.61 -1.53 16 5 C 0.17 4.81 6.40 138.46 0.89 5.70 16 6 N -0.40 -12.09 11.47 -60.32 -0.69 -12.78 16 7 O 0.07 2.00 11.29 74.85 0.85 2.85 16 8 C 0.20 5.78 7.32 88.38 0.65 6.43 16 9 C 0.20 4.98 3.35 44.17 0.15 5.13 16 10 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 11 N -0.83 -18.15 9.17 -171.79 -1.58 -19.73 16 12 C -0.14 -4.26 4.84 30.59 0.15 -4.12 16 13 C -0.09 -3.35 4.92 30.59 0.15 -3.20 16 14 C 0.02 1.11 4.97 29.85 0.15 1.26 16 15 C -0.54 -29.64 9.11 25.60 0.23 -29.40 16 16 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 18 N -0.94 -56.71 13.29 21.45 0.28 -56.42 16 19 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 N -0.49 -14.50 11.55 -303.19 -3.50 -18.00 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.37 7.25 7.55 -89.69 -0.68 6.57 16 34 H 0.35 7.29 8.97 -89.70 -0.81 6.48 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.23 6.87 -2.38 -0.02 2.21 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -66.66 341.45 1.49 -65.18 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.46 Total: 16.06 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.56 Total: -22.60 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -5.48 Total: -106.93 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.85 Total: 2.85 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.66 1.49 -65.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593941961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.139 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds