Wall clock time and date at job start Mon Mar 30 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.46984 * 2 1 4 4 C 1.53001 * 109.46790 * 239.99748 * 2 1 3 5 5 C 1.50700 * 109.47101 * 120.00094 * 2 1 3 6 6 N 1.29954 * 126.28649 * 0.02661 * 5 2 1 7 7 O 1.21294 * 110.24985 * 179.73386 * 6 5 2 8 8 C 1.33643 * 109.81343 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55336 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47245 * 195.02320 * 9 8 7 11 11 N 1.46902 * 109.46954 * 315.01980 * 9 8 7 12 12 C 1.52994 * 109.47289 * 75.02278 * 9 8 7 13 13 C 1.53004 * 109.47247 * 175.00321 * 12 9 8 14 14 C 1.52994 * 109.47247 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.47333 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99858 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00142 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99705 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99841 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46773 * 90.00089 * 19 17 15 21 21 H 1.48501 * 109.46993 * 210.00173 * 19 17 15 22 22 H 1.48497 * 109.47187 * 330.00516 * 19 17 15 23 23 N 1.31132 * 106.89433 * 359.97438 * 8 7 6 24 24 H 1.09007 * 109.47206 * 299.99742 * 1 2 3 25 25 H 1.08998 * 109.47633 * 59.99968 * 1 2 3 26 26 H 1.09006 * 109.47591 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47032 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47173 * 300.00049 * 3 2 1 29 29 H 1.09001 * 109.47366 * 60.00091 * 3 2 1 30 30 H 1.08992 * 109.47684 * 300.00084 * 4 2 1 31 31 H 1.09004 * 109.47017 * 60.00166 * 4 2 1 32 32 H 1.08995 * 109.46762 * 179.97438 * 4 2 1 33 33 H 1.00899 * 110.99529 * 60.00344 * 11 9 8 34 34 H 1.00898 * 111.00071 * 183.95632 * 11 9 8 35 35 H 1.09007 * 109.47110 * 294.99684 * 12 9 8 36 36 H 1.08995 * 109.47105 * 54.99985 * 12 9 8 37 37 H 1.08997 * 109.46700 * 299.99841 * 13 12 9 38 38 H 1.09001 * 109.47200 * 59.99424 * 13 12 9 39 39 H 1.09000 * 109.46908 * 300.00040 * 14 13 12 40 40 H 1.09001 * 109.47490 * 59.99602 * 14 13 12 41 41 H 0.97002 * 119.99441 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.3011 -1.2480 2.1606 7 8 2.0056 -1.7461 3.0131 8 6 3.2922 -1.5688 2.6980 9 6 4.4837 -2.0365 3.4934 10 1 5.3796 -1.5266 3.1394 11 7 4.2748 -1.7293 4.9147 12 6 4.6533 -3.5468 3.3175 13 6 5.9328 -4.0018 4.0223 14 6 6.1021 -5.5123 3.8470 15 6 7.3627 -5.9604 4.5407 16 1 7.9811 -5.2399 5.0555 17 6 7.7261 -7.2903 4.5190 18 7 6.9728 -8.1676 3.8926 19 14 9.2890 -7.8455 5.3782 20 1 8.9783 -8.2099 6.7839 21 1 9.8489 -9.0263 4.6729 22 1 10.2822 -6.7417 5.3610 23 7 3.3196 -0.9110 1.5640 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7209 -1.2495 33 1 3.4495 -2.1907 5.2667 34 1 5.0870 -1.9746 5.4608 35 1 3.7964 -4.0617 3.7522 36 1 4.7194 -3.7838 2.2557 37 1 6.7896 -3.4870 3.5878 38 1 5.8667 -3.7648 5.0842 39 1 5.2451 -6.0267 4.2818 40 1 6.1680 -5.7497 2.7853 41 1 7.2282 -9.1032 3.8777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593941962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:18 Heat of formation + Delta-G solvation = 9.960115 kcal Electronic energy + Delta-G solvation = -20173.911267 eV Core-core repulsion = 17089.932241 eV Total energy + Delta-G solvation = -3083.979026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.64759 -38.74469 -38.48481 -35.96558 -35.38116 -33.38985 -32.42470 -29.52757 -28.39877 -28.27681 -26.93777 -25.58653 -24.68112 -22.91661 -21.83916 -20.33627 -19.12222 -18.45149 -18.35213 -17.46128 -16.51531 -16.36766 -16.10810 -15.39675 -15.19861 -15.13351 -14.80394 -14.40007 -14.06756 -13.71823 -13.48776 -13.44426 -13.14545 -12.94212 -12.72095 -12.64090 -12.57447 -12.52167 -12.40677 -12.38366 -12.18593 -11.98198 -11.79118 -11.49653 -11.42434 -11.21011 -10.96477 -10.55087 -9.87071 -8.19699 -6.30717 0.07605 1.16904 1.41658 1.42456 1.53510 1.74579 2.40859 2.44754 2.90439 3.14268 3.56189 3.64580 3.83719 3.85589 3.94380 4.02998 4.12110 4.42523 4.50937 4.61165 4.65540 4.66846 4.72141 4.76345 4.82894 4.88018 4.88122 4.99549 5.03566 5.16881 5.18994 5.24225 5.26906 5.31297 5.53117 5.73579 5.85915 5.93062 6.24087 6.41070 6.87742 7.10571 7.39217 8.92122 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.036245 B = 0.003176 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.343459 B = 8813.733747 C = 9068.351602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.175 3.825 6 N -0.403 5.403 7 O 0.067 5.933 8 C 0.203 3.797 9 C 0.198 3.802 10 H 0.133 0.867 11 N -0.835 5.835 12 C -0.140 4.140 13 C -0.093 4.093 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.260 1.260 23 N -0.493 5.493 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.352 0.648 34 H 0.370 0.630 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.069 0.931 39 H -0.010 1.010 40 H -0.014 1.014 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 18.399 -6.198 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 C -0.190 4.190 4 C -0.193 4.193 5 C -0.098 4.098 6 N -0.113 5.113 7 O 0.013 5.987 8 C -0.018 4.018 9 C 0.084 3.916 10 H 0.151 0.849 11 N -0.369 5.369 12 C -0.181 4.181 13 C -0.131 4.131 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.577 5.577 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.185 1.185 23 N -0.227 5.227 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.188 0.812 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.009 0.991 40 H 0.005 0.995 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.056 19.200 -6.795 23.174 hybrid contribution 0.847 -2.143 0.682 2.403 sum -10.209 17.056 -6.113 20.797 Atomic orbital electron populations 1.21813 0.91414 1.02421 1.03516 1.19279 0.96906 0.95312 0.86873 1.21830 1.01594 0.92188 1.03386 1.21853 1.01609 0.99834 0.95991 1.26461 0.85073 0.99176 0.99112 1.74589 1.19231 1.15584 1.01945 1.85235 1.16724 1.57037 1.39734 1.29086 0.87618 0.93074 0.92030 1.19913 0.89122 0.94118 0.88450 0.84909 1.58914 1.11041 1.66378 1.00585 1.22364 0.99796 0.94074 1.01866 1.21421 0.95436 0.96273 0.99976 1.19010 0.95212 0.92470 0.94819 1.21744 1.08839 0.93592 1.33658 0.91568 1.26005 1.00573 0.97231 0.96282 1.70108 1.40264 1.02803 1.44488 0.85461 0.79301 0.77940 0.78452 1.19777 1.21184 1.18450 1.71807 1.21008 1.17878 1.12016 0.92790 0.88456 0.93180 0.92359 0.88407 0.93103 0.93547 0.88320 0.92403 0.83392 0.81221 0.91604 0.92309 0.91965 0.91259 0.99140 0.99541 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.97 71.98 0.57 -1.68 16 2 C 0.02 0.36 0.99 -52.93 -0.05 0.31 16 3 C -0.13 -2.14 8.46 71.98 0.61 -1.53 16 4 C -0.13 -2.37 8.46 71.98 0.61 -1.77 16 5 C 0.17 4.81 6.40 138.46 0.89 5.70 16 6 N -0.40 -12.09 11.47 -60.33 -0.69 -12.78 16 7 O 0.07 2.00 11.29 74.84 0.85 2.84 16 8 C 0.20 5.78 7.32 88.38 0.65 6.43 16 9 C 0.20 4.98 3.35 44.17 0.15 5.13 16 10 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 11 N -0.83 -18.15 9.17 -171.81 -1.58 -19.72 16 12 C -0.14 -4.27 4.84 30.59 0.15 -4.12 16 13 C -0.09 -3.35 4.92 30.59 0.15 -3.20 16 14 C 0.02 1.11 4.97 29.85 0.15 1.26 16 15 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 16 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 18 N -0.94 -56.70 13.29 21.45 0.28 -56.41 16 19 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 23 N -0.49 -14.50 11.55 -303.20 -3.50 -18.00 16 24 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.35 7.28 8.97 -89.69 -0.80 6.48 16 34 H 0.37 7.24 7.55 -89.70 -0.68 6.56 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.23 6.87 -2.39 -0.02 2.21 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -66.67 341.45 1.49 -65.18 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.46 Total: 16.05 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 4.56 Total: -22.61 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -5.49 Total: -106.91 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.85 Total: 2.84 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.67 1.49 -65.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593941962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.141 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds