Wall clock time and date at job start Mon Mar 30 2020 07:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46999 * 300.00152 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00052 * 3 2 1 7 7 C 1.37874 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47353 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99838 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00072 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47289 * 180.02562 * 15 14 12 17 17 C 1.54248 * 108.89537 * 296.39524 * 16 15 14 18 18 C 1.50550 * 108.48395 * 159.17985 * 17 16 15 19 19 C 1.54068 * 112.41457 * 94.26857 * 18 17 16 20 20 C 1.54066 * 112.81611 * 318.27436 * 19 18 17 21 21 C 1.50477 * 112.49695 * 318.29173 * 20 19 18 22 22 C 1.45537 * 108.89398 * 173.60521 * 16 15 14 23 23 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47113 * 60.00170 * 9 7 2 25 25 H 1.09001 * 109.47438 * 300.00425 * 9 7 2 26 26 H 1.08996 * 109.47261 * 60.00411 * 10 9 7 27 27 H 1.08992 * 109.47554 * 299.99877 * 10 9 7 28 28 H 1.09004 * 109.46832 * 60.00120 * 11 10 9 29 29 H 1.09001 * 109.47420 * 300.00558 * 11 10 9 30 30 H 0.97001 * 120.00676 * 359.97438 * 14 12 11 31 31 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 32 32 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 33 33 H 1.09002 * 108.87282 * 54.99745 * 16 15 14 34 34 H 1.09008 * 109.62330 * 278.97719 * 17 16 15 35 35 H 1.09000 * 109.62936 * 39.55337 * 17 16 15 36 36 H 1.09004 * 108.92282 * 333.51199 * 18 17 16 37 37 H 1.09006 * 108.91689 * 215.01805 * 18 17 16 38 38 H 1.09002 * 108.81407 * 197.41999 * 19 18 17 39 39 H 1.09000 * 108.73078 * 79.07815 * 19 18 17 40 40 H 1.08994 * 108.88063 * 197.51092 * 20 19 18 41 41 H 1.08999 * 108.87575 * 79.06600 * 20 19 18 42 42 H 1.08997 * 109.62723 * 334.43927 * 21 20 19 43 43 H 1.09003 * 109.62368 * 213.85974 * 21 20 19 44 44 H 1.09000 * 108.89517 * 303.43801 * 22 16 15 45 45 H 1.09007 * 108.89778 * 62.03200 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4596 -6.1325 -0.0005 13 8 3.6520 -5.9109 -0.0009 14 7 2.0103 -7.4032 -0.0006 15 6 2.9623 -8.5168 -0.0007 16 6 2.1973 -9.8417 -0.0015 17 6 1.3852 -9.9504 1.3054 18 6 0.2755 -10.9461 1.0964 19 6 0.6635 -12.3638 1.5581 20 6 2.1025 -12.7477 1.1636 21 6 2.4531 -12.3094 -0.2326 22 6 3.1468 -10.9340 -0.1549 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8904 28 1 0.8534 -5.0451 -0.8897 29 1 0.8539 -5.0446 0.8903 30 1 1.0566 -7.5805 0.0001 31 1 3.5890 -8.4589 -0.8906 32 1 3.5890 -8.4591 0.8893 33 1 1.5089 -9.8510 -0.8466 34 1 2.0348 -10.2878 2.1131 35 1 0.9610 -8.9778 1.5549 36 1 0.0234 -10.9771 0.0363 37 1 -0.6014 -10.6206 1.6561 38 1 -0.0262 -13.0800 1.1116 39 1 0.5706 -12.4163 2.6429 40 1 2.2097 -13.8302 1.2308 41 1 2.7962 -12.2824 1.8639 42 1 1.5448 -12.2282 -0.8298 43 1 3.1287 -13.0352 -0.6853 44 1 3.7216 -10.7765 -1.0675 45 1 3.8282 -10.9316 0.6959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594041424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:11 Heat of formation + Delta-G solvation = -88.449399 kcal Electronic energy + Delta-G solvation = -20138.205867 eV Core-core repulsion = 17153.499828 eV Total energy + Delta-G solvation = -2984.706039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.03182 -38.89305 -35.20751 -34.11430 -32.78180 -32.23928 -31.85601 -28.27131 -26.64373 -25.08410 -23.96391 -22.78940 -20.84996 -20.42299 -19.65956 -19.54814 -16.95676 -16.15224 -15.93146 -15.88551 -15.50481 -14.97933 -14.85626 -14.39133 -13.88429 -13.73021 -13.32902 -13.25874 -13.01431 -12.71271 -12.46519 -12.23829 -12.07639 -11.77430 -11.29767 -11.07802 -10.92889 -10.89200 -10.79426 -10.69352 -10.66807 -10.56364 -10.49490 -10.44733 -9.64257 -9.63523 -9.22765 -8.96906 -8.93172 -8.30017 -5.95559 -3.96672 2.99784 3.35251 3.37921 3.42489 3.48679 4.20722 4.29363 4.47062 4.51482 4.74363 4.76124 4.85010 4.94746 4.99595 5.07632 5.21767 5.36376 5.40571 5.43009 5.45379 5.62100 5.63381 5.70785 5.75332 5.76921 5.79425 5.84184 5.87622 5.88694 5.92095 6.01655 6.12289 6.14875 6.31190 6.56620 6.77108 6.97674 7.20306 7.67130 7.74568 7.87074 8.05669 8.49622 8.53197 9.10805 9.67225 11.16041 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.049749 B = 0.002617 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.694278 B =10695.669712 C =11073.566790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.540 6.540 14 N -0.739 5.739 15 C 0.121 3.879 16 C -0.095 4.095 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.114 4.114 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -27.688 1.209 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.299 3.701 13 O -0.416 6.416 14 N -0.393 5.393 15 C -0.003 4.003 16 C -0.114 4.114 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.152 4.152 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.903 -27.403 1.210 27.445 hybrid contribution -0.113 0.793 0.012 0.801 sum 0.791 -26.610 1.222 26.650 Atomic orbital electron populations 1.69975 1.06032 1.26395 1.51399 1.25027 0.94861 0.99262 0.95444 0.86538 0.80244 0.83770 0.77500 1.19685 1.21050 1.21055 1.21321 0.93236 0.91022 1.49872 0.92527 1.19141 0.93987 0.91505 0.97101 1.21436 0.98611 0.91579 1.01653 1.21842 0.98169 0.94208 1.03660 1.21254 0.90354 0.83808 0.74715 1.90673 1.17399 1.84796 1.48720 1.46167 1.10030 1.05829 1.77280 1.21433 0.91957 0.84842 1.02096 1.20352 0.98051 0.94157 0.98797 1.21461 0.97370 0.99355 0.97112 1.21357 0.98242 0.94521 1.01598 1.21912 0.96367 0.96484 1.00699 1.21354 0.96845 1.00448 0.97107 1.21301 1.00542 0.96279 0.97134 1.20462 0.98129 0.94106 1.02468 0.93149 0.96616 0.96621 0.92749 0.92744 0.89451 0.89444 0.76712 0.91866 0.91798 0.90739 0.91367 0.91395 0.92025 0.92197 0.92480 0.92421 0.92564 0.92013 0.91575 0.91943 0.91896 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 12 C 0.51 8.40 7.83 -10.99 -0.09 8.32 16 13 O -0.54 -11.14 15.98 5.55 0.09 -11.06 16 14 N -0.74 -8.78 5.04 -60.29 -0.30 -9.08 16 15 C 0.12 1.28 4.98 -4.04 -0.02 1.26 16 16 C -0.09 -0.72 1.75 -93.49 -0.16 -0.88 16 17 C -0.12 -0.84 4.88 -27.30 -0.13 -0.97 16 18 C -0.12 -0.77 5.32 -27.40 -0.15 -0.92 16 19 C -0.12 -0.71 5.85 -25.62 -0.15 -0.86 16 20 C -0.12 -0.72 5.31 -27.43 -0.15 -0.87 16 21 C -0.12 -0.70 5.61 -27.34 -0.15 -0.85 16 22 C -0.11 -0.79 4.44 -29.60 -0.13 -0.92 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.40 3.66 7.68 -40.82 -0.31 3.35 16 31 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.55 7.46 -51.93 -0.39 0.16 16 34 H 0.07 0.52 6.97 -51.92 -0.36 0.16 16 35 H 0.07 0.53 6.81 -51.93 -0.35 0.18 16 36 H 0.06 0.39 6.63 -51.93 -0.34 0.05 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.40 6.62 -51.93 -0.34 0.05 16 42 H 0.07 0.41 6.98 -51.93 -0.36 0.05 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 45 H 0.06 0.46 7.46 -51.92 -0.39 0.07 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -33.08 347.18 -9.52 -42.61 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -8.30 Total: -3.32 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.96 Total: -14.97 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.43 Total: -35.71 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.08 -9.52 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594041424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.844 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds