Wall clock time and date at job start Mon Mar 30 2020 07:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46999 * 300.00152 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00052 * 3 2 1 7 7 C 1.37874 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47353 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99838 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00072 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47289 * 180.02562 * 15 14 12 17 17 C 1.54248 * 108.89537 * 296.39524 * 16 15 14 18 18 C 1.50550 * 108.48395 * 159.17985 * 17 16 15 19 19 C 1.54068 * 112.41457 * 94.26857 * 18 17 16 20 20 C 1.54066 * 112.81611 * 318.27436 * 19 18 17 21 21 C 1.50477 * 112.49695 * 318.29173 * 20 19 18 22 22 C 1.45537 * 108.89398 * 173.60521 * 16 15 14 23 23 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47113 * 60.00170 * 9 7 2 25 25 H 1.09001 * 109.47438 * 300.00425 * 9 7 2 26 26 H 1.08996 * 109.47261 * 60.00411 * 10 9 7 27 27 H 1.08992 * 109.47554 * 299.99877 * 10 9 7 28 28 H 1.09004 * 109.46832 * 60.00120 * 11 10 9 29 29 H 1.09001 * 109.47420 * 300.00558 * 11 10 9 30 30 H 0.97001 * 120.00676 * 359.97438 * 14 12 11 31 31 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 32 32 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 33 33 H 1.09002 * 108.87282 * 54.99745 * 16 15 14 34 34 H 1.09008 * 109.62330 * 278.97719 * 17 16 15 35 35 H 1.09000 * 109.62936 * 39.55337 * 17 16 15 36 36 H 1.09004 * 108.92282 * 333.51199 * 18 17 16 37 37 H 1.09006 * 108.91689 * 215.01805 * 18 17 16 38 38 H 1.09002 * 108.81407 * 197.41999 * 19 18 17 39 39 H 1.09000 * 108.73078 * 79.07815 * 19 18 17 40 40 H 1.08994 * 108.88063 * 197.51092 * 20 19 18 41 41 H 1.08999 * 108.87575 * 79.06600 * 20 19 18 42 42 H 1.08997 * 109.62723 * 334.43927 * 21 20 19 43 43 H 1.09003 * 109.62368 * 213.85974 * 21 20 19 44 44 H 1.09000 * 108.89517 * 303.43801 * 22 16 15 45 45 H 1.09007 * 108.89778 * 62.03200 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4596 -6.1325 -0.0005 13 8 3.6520 -5.9109 -0.0009 14 7 2.0103 -7.4032 -0.0006 15 6 2.9623 -8.5168 -0.0007 16 6 2.1973 -9.8417 -0.0015 17 6 1.3852 -9.9504 1.3054 18 6 0.2755 -10.9461 1.0964 19 6 0.6635 -12.3638 1.5581 20 6 2.1025 -12.7477 1.1636 21 6 2.4531 -12.3094 -0.2326 22 6 3.1468 -10.9340 -0.1549 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8904 28 1 0.8534 -5.0451 -0.8897 29 1 0.8539 -5.0446 0.8903 30 1 1.0566 -7.5805 0.0001 31 1 3.5890 -8.4589 -0.8906 32 1 3.5890 -8.4591 0.8893 33 1 1.5089 -9.8510 -0.8466 34 1 2.0348 -10.2878 2.1131 35 1 0.9610 -8.9778 1.5549 36 1 0.0234 -10.9771 0.0363 37 1 -0.6014 -10.6206 1.6561 38 1 -0.0262 -13.0800 1.1116 39 1 0.5706 -12.4163 2.6429 40 1 2.2097 -13.8302 1.2308 41 1 2.7962 -12.2824 1.8639 42 1 1.5448 -12.2282 -0.8298 43 1 3.1287 -13.0352 -0.6853 44 1 3.7216 -10.7765 -1.0675 45 1 3.8282 -10.9316 0.6959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594041424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:11 Heat of formation + Delta-G solvation = -107.682914 kcal Electronic energy + Delta-G solvation = -20139.039895 eV Core-core repulsion = 17153.499828 eV Total energy + Delta-G solvation = -2985.540067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00996 -39.84819 -36.32008 -35.91432 -34.05967 -33.41086 -32.79888 -29.93886 -27.72015 -25.85945 -25.41476 -23.75658 -22.20064 -21.57019 -20.87920 -20.08522 -18.62973 -17.81343 -16.97901 -16.87947 -16.55479 -16.42190 -15.89019 -15.39067 -15.06216 -14.89973 -14.30963 -14.17433 -14.00764 -13.82283 -13.73636 -13.53025 -13.09514 -12.99558 -12.74139 -12.59433 -12.51891 -12.37779 -11.64786 -11.55530 -11.50245 -11.48765 -11.45012 -11.25222 -11.23984 -11.17107 -11.02464 -10.70922 -10.54720 -10.05252 -8.20501 -6.30329 1.39294 1.39484 1.53515 1.67958 2.26586 2.42396 3.12383 3.60507 3.67704 3.90302 3.95719 4.19484 4.21762 4.26091 4.27632 4.29474 4.42472 4.46467 4.53613 4.65449 4.75708 4.78294 4.87622 4.98120 4.99019 5.06775 5.11786 5.16012 5.18291 5.19637 5.32153 5.36397 5.38674 5.39969 5.41154 5.51145 5.55013 5.60440 5.63502 5.75886 5.87234 6.27772 6.58991 6.85325 7.30524 7.38406 8.91267 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.049749 B = 0.002617 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.694278 B =10695.669712 C =11073.566790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.716 5.716 15 C 0.120 3.880 16 C -0.081 4.081 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.114 4.114 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.415 0.585 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -28.665 1.073 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.468 6.468 14 N -0.370 5.370 15 C -0.003 4.003 16 C -0.100 4.100 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.152 4.152 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.253 0.747 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.375 -28.428 1.076 28.450 hybrid contribution 0.015 1.052 0.062 1.054 sum 0.391 -27.376 1.137 27.402 Atomic orbital electron populations 1.70073 1.07475 1.27732 1.51684 1.25914 0.95850 1.03086 0.94710 0.85441 0.78855 0.78976 0.78044 1.19289 1.20006 1.20020 1.21722 0.93317 0.92852 1.50583 0.93152 1.19026 0.94196 0.92361 0.95556 1.21157 0.97628 0.93106 1.00189 1.21682 0.97931 0.91709 1.05728 1.21076 0.89330 0.85005 0.74472 1.90661 1.19167 1.85608 1.51396 1.45954 1.11285 1.04678 1.75044 1.21542 0.91970 0.85707 1.01120 1.20281 0.97925 0.92394 0.99411 1.21440 0.97533 0.99474 0.96659 1.21332 0.97824 0.94417 1.01953 1.21913 0.96473 0.96367 1.00700 1.21354 0.96704 1.00805 0.96901 1.21270 1.00666 0.95628 0.97252 1.20461 0.98003 0.94472 1.02302 0.92646 0.98016 0.98023 0.94226 0.94209 0.87374 0.87376 0.74734 0.92780 0.92945 0.89791 0.91808 0.91808 0.91557 0.91981 0.91916 0.92545 0.91977 0.92592 0.91268 0.91332 0.91952 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 45.61 29.54 68.60 2.03 47.63 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.55 -32.57 9.11 25.60 0.23 -32.34 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.08 -3.71 4.44 30.59 0.14 -3.57 16 11 C -0.13 -4.29 5.70 29.85 0.17 -4.12 16 12 C 0.51 16.53 7.83 87.66 0.69 17.21 16 13 O -0.59 -24.54 15.98 -3.04 -0.05 -24.59 16 14 N -0.72 -15.95 5.04 -463.05 -2.33 -18.28 16 15 C 0.12 2.45 4.98 86.38 0.43 2.88 16 16 C -0.08 -1.09 1.75 -12.65 -0.02 -1.12 16 17 C -0.11 -1.46 4.88 30.22 0.15 -1.31 16 18 C -0.12 -1.27 5.32 30.16 0.16 -1.11 16 19 C -0.12 -1.19 5.85 31.32 0.18 -1.01 16 20 C -0.12 -1.23 5.31 30.14 0.16 -1.07 16 21 C -0.11 -1.13 5.61 30.20 0.17 -0.96 16 22 C -0.11 -1.42 4.44 28.74 0.13 -1.29 16 23 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 24 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 27 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 28 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.42 6.60 7.68 -92.71 -0.71 5.89 16 31 H 0.05 1.23 8.05 -2.39 -0.02 1.22 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 1.02 7.46 -2.39 -0.02 1.00 16 34 H 0.06 0.89 6.97 -2.38 -0.02 0.88 16 35 H 0.06 0.87 6.81 -2.39 -0.02 0.86 16 36 H 0.07 0.66 6.63 -2.38 -0.02 0.65 16 37 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.64 6.62 -2.39 -0.02 0.63 16 42 H 0.07 0.68 6.98 -2.39 -0.02 0.67 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.79 8.04 -2.39 -0.02 0.77 16 45 H 0.06 0.80 7.46 -2.38 -0.02 0.79 16 Total: -1.00 -71.41 347.18 3.35 -68.06 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.23 Total: 9.34 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 3.19 Total: -25.68 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -2.05 Total: -74.77 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.41 3.35 -68.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594041424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.622 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds