Wall clock time and date at job start Mon Mar 30 2020 06:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48498 * 109.47458 * 239.99731 * 3 2 1 5 5 H 1.48501 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47148 * 120.00077 * 3 2 1 7 7 C 1.37879 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99585 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.42902 * 114.00169 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47278 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47231 * 66.98207 * 12 11 10 14 14 C 1.46898 * 110.99899 * 158.65082 * 13 12 11 15 15 C 1.53003 * 109.47165 * 198.18911 * 14 13 12 16 16 C 1.52994 * 109.47198 * 183.42470 * 15 14 13 17 17 C 1.53005 * 117.50165 * 243.62642 * 16 15 14 18 18 C 1.52999 * 117.50006 * 175.00010 * 16 15 14 19 19 C 1.46904 * 110.99915 * 282.60405 * 13 12 11 20 20 C 1.52990 * 109.47276 * 297.14280 * 19 13 12 21 21 C 1.53005 * 117.49922 * 242.51891 * 20 19 13 22 22 C 1.52998 * 117.50057 * 173.85874 * 20 19 13 23 23 H 0.97000 * 120.00166 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.47797 * 59.99780 * 9 7 2 25 25 H 1.09004 * 109.46791 * 299.99409 * 9 7 2 26 26 H 1.09009 * 109.47094 * 59.99591 * 11 10 9 27 27 H 1.09005 * 109.47010 * 300.00135 * 11 10 9 28 28 H 1.09000 * 109.46820 * 306.97454 * 12 11 10 29 29 H 1.09000 * 109.46886 * 186.98139 * 12 11 10 30 30 H 1.08993 * 109.47416 * 318.19433 * 14 13 12 31 31 H 1.09004 * 109.47248 * 78.19545 * 14 13 12 32 32 H 1.08997 * 109.47106 * 303.43162 * 15 14 13 33 33 H 1.09005 * 109.46528 * 63.42886 * 15 14 13 34 34 H 1.09004 * 115.54852 * 29.33458 * 16 15 14 35 35 H 1.08996 * 117.49589 * 359.97438 * 17 16 15 36 36 H 1.08994 * 117.49818 * 145.02462 * 17 16 15 37 37 H 1.08992 * 117.50191 * 214.97715 * 18 16 15 38 38 H 1.09009 * 117.49740 * 0.02562 * 18 16 15 39 39 H 1.08998 * 109.47126 * 177.14084 * 19 13 12 40 40 H 1.09002 * 109.46802 * 57.13964 * 19 13 12 41 41 H 1.09003 * 115.55083 * 28.18839 * 20 19 13 42 42 H 1.08993 * 117.49516 * 0.02562 * 21 20 19 43 43 H 1.09003 * 117.49930 * 145.02063 * 21 20 19 44 44 H 1.09001 * 117.50352 * 214.97547 * 22 20 19 45 45 H 1.08999 * 117.49922 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5654 -4.8754 0.0011 12 6 2.6484 -5.9561 0.0017 13 7 3.3774 -5.9181 1.2764 14 6 4.0489 -7.1983 1.5372 15 6 4.4032 -7.2951 3.0225 16 6 5.1778 -8.5893 3.2787 17 6 4.5303 -9.6311 4.1933 18 6 5.7272 -8.8166 4.6885 19 6 4.3367 -4.8057 1.3012 20 6 5.3876 -5.0141 0.2091 21 6 6.8419 -5.1873 0.6518 22 6 6.3968 -3.8881 -0.0243 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8895 25 1 0.6242 -2.5566 0.8904 26 1 0.9448 -4.9827 -0.8887 27 1 0.9455 -4.9822 0.8914 28 1 3.3422 -5.7756 -0.8194 29 1 2.1850 -6.9348 -0.1228 30 1 3.3840 -8.0188 1.2680 31 1 4.9600 -7.2586 0.9418 32 1 5.0185 -6.4412 3.3057 33 1 3.4881 -7.2960 3.6149 34 1 5.7730 -8.9545 2.4417 35 1 3.5526 -9.3941 4.6129 36 1 4.6994 -10.6818 3.9581 37 1 6.6835 -9.3316 4.7790 38 1 5.5364 -8.0441 5.4336 39 1 4.8263 -4.7698 2.2744 40 1 3.8101 -3.8679 1.1245 41 1 5.0555 -5.5806 -0.6610 42 1 7.0498 -5.1533 1.7212 43 1 7.4667 -5.8675 0.0728 44 1 6.7291 -3.7141 -1.0478 45 1 6.3118 -2.9987 0.6000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595870958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:21 Heat of formation + Delta-G solvation = -3.897929 kcal Electronic energy + Delta-G solvation = -20867.062935 eV Core-core repulsion = 17886.023323 eV Total energy + Delta-G solvation = -2981.039612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99825 -37.51003 -36.56932 -35.22838 -32.70003 -30.93567 -28.71993 -26.99771 -25.58782 -22.60526 -22.43779 -22.25087 -22.08931 -21.81158 -20.38312 -19.23824 -16.38321 -16.27755 -15.94092 -15.60211 -15.25402 -14.83351 -14.36294 -14.26214 -14.00578 -13.69698 -13.23469 -13.08505 -12.30476 -12.12426 -11.72693 -11.67329 -11.61236 -11.54598 -11.35249 -11.25926 -11.11471 -10.95978 -10.78085 -10.71403 -10.56940 -10.26363 -10.10209 -9.96043 -9.90150 -9.47181 -9.04069 -8.72660 -8.09081 -7.92407 -6.07438 -4.08835 3.33510 3.36453 3.39936 3.65777 3.99396 4.16963 4.37549 4.70526 4.80509 4.81206 4.92550 5.00230 5.15122 5.18021 5.25473 5.29039 5.30705 5.47273 5.49133 5.57564 5.60876 5.70189 5.77813 5.83088 5.88536 5.95039 5.95633 6.03104 6.10134 6.11908 6.15472 6.25220 6.28985 6.33888 6.40211 6.48679 6.91212 7.18712 7.41696 7.48165 7.51332 7.82500 8.20581 8.64250 9.04917 9.55842 11.04102 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.004041 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.757387 B = 6927.745797 C = 7384.617016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.068 3.932 12 C 0.055 3.945 13 N -0.527 5.527 14 C 0.054 3.946 15 C -0.082 4.082 16 C -0.147 4.147 17 C -0.183 4.183 18 C -0.183 4.183 19 C 0.075 3.925 20 C -0.173 4.173 21 C -0.188 4.188 22 C -0.170 4.170 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.005 0.995 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.406 -16.735 4.296 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.010 4.010 12 C -0.073 4.073 13 N -0.250 5.250 14 C -0.074 4.074 15 C -0.120 4.120 16 C -0.166 4.166 17 C -0.220 4.220 18 C -0.220 4.220 19 C -0.053 4.053 20 C -0.193 4.193 21 C -0.225 4.225 22 C -0.208 4.208 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.073 -16.504 4.676 19.892 hybrid contribution 0.677 0.643 -0.732 1.186 sum 10.750 -15.860 3.944 19.562 Atomic orbital electron populations 1.69954 1.06091 1.27158 1.50627 1.24937 0.94932 0.99342 0.95266 0.86440 0.79345 0.82147 0.78788 1.20088 1.21224 1.20028 1.21010 0.93905 0.89420 1.50671 0.91681 1.20156 0.88818 0.83688 0.95226 1.87798 1.35144 1.13026 1.94990 1.22261 0.94279 0.85385 0.99099 1.22233 0.96261 0.97950 0.90816 1.62179 1.27136 1.02992 1.32660 1.22123 0.97573 0.91816 0.95860 1.21112 0.99353 0.94893 0.96605 1.22318 1.02818 0.97754 0.93719 1.23030 0.97586 0.96785 1.04550 1.22946 0.97872 1.03480 0.97745 1.22187 0.91036 0.96732 0.95301 1.22973 0.91187 1.03073 1.02049 1.23021 0.98029 1.00902 1.00563 1.22849 1.03534 0.92880 1.01490 0.92671 0.98026 0.97765 0.94493 0.93743 0.93535 0.90848 0.91680 0.94293 0.91520 0.91290 0.88147 0.88756 0.89241 0.89167 0.88833 0.91668 0.86197 0.88344 0.89211 0.89813 0.89330 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.92 9.43 -34.44 -0.32 -15.24 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.20 5.33 5.69 36.00 0.20 5.54 16 10 O -0.39 -9.11 7.55 -35.23 -0.27 -9.37 16 11 C 0.07 1.27 6.25 37.16 0.23 1.50 16 12 C 0.06 0.84 5.40 -3.83 -0.02 0.82 16 13 N -0.53 -7.89 4.57 -234.64 -1.07 -8.97 16 14 C 0.05 0.66 4.81 -3.82 -0.02 0.64 16 15 C -0.08 -0.91 5.63 -26.73 -0.15 -1.07 16 16 C -0.15 -1.40 5.74 -90.62 -0.52 -1.92 16 17 C -0.18 -1.58 10.18 -26.72 -0.27 -1.85 16 18 C -0.18 -1.60 10.25 -26.73 -0.27 -1.87 16 19 C 0.07 1.20 5.30 -3.83 -0.02 1.18 16 20 C -0.17 -2.49 3.94 -90.62 -0.36 -2.85 16 21 C -0.19 -2.31 10.08 -26.69 -0.27 -2.58 16 22 C -0.17 -2.40 10.25 -26.69 -0.27 -2.67 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 25 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 26 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.72 5.78 -51.93 -0.30 0.42 16 29 H 0.07 0.94 7.58 -51.93 -0.39 0.54 16 30 H 0.06 0.74 7.61 -51.93 -0.40 0.34 16 31 H 0.04 0.47 6.62 -51.93 -0.34 0.12 16 32 H 0.07 0.80 6.73 -51.93 -0.35 0.45 16 33 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 34 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.09 0.82 8.03 -51.93 -0.42 0.41 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.06 0.99 6.44 -51.93 -0.33 0.65 16 40 H 0.12 2.42 5.44 -51.93 -0.28 2.13 16 41 H 0.10 1.45 6.20 -51.93 -0.32 1.13 16 42 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -29.77 356.65 -10.56 -40.34 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.16 Total: 0.93 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.16 Total: -18.85 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.34 Total: -35.26 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.27 Total: -9.37 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.77 -10.56 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595870958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.441 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds