Wall clock time and date at job start Mon Mar 30 2020 06:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48498 * 109.47458 * 239.99731 * 3 2 1 5 5 H 1.48501 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47148 * 120.00077 * 3 2 1 7 7 C 1.37879 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99585 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.42902 * 114.00169 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47278 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47231 * 66.98207 * 12 11 10 14 14 C 1.46898 * 110.99899 * 158.65082 * 13 12 11 15 15 C 1.53003 * 109.47165 * 198.18911 * 14 13 12 16 16 C 1.52994 * 109.47198 * 183.42470 * 15 14 13 17 17 C 1.53005 * 117.50165 * 243.62642 * 16 15 14 18 18 C 1.52999 * 117.50006 * 175.00010 * 16 15 14 19 19 C 1.46904 * 110.99915 * 282.60405 * 13 12 11 20 20 C 1.52990 * 109.47276 * 297.14280 * 19 13 12 21 21 C 1.53005 * 117.49922 * 242.51891 * 20 19 13 22 22 C 1.52998 * 117.50057 * 173.85874 * 20 19 13 23 23 H 0.97000 * 120.00166 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.47797 * 59.99780 * 9 7 2 25 25 H 1.09004 * 109.46791 * 299.99409 * 9 7 2 26 26 H 1.09009 * 109.47094 * 59.99591 * 11 10 9 27 27 H 1.09005 * 109.47010 * 300.00135 * 11 10 9 28 28 H 1.09000 * 109.46820 * 306.97454 * 12 11 10 29 29 H 1.09000 * 109.46886 * 186.98139 * 12 11 10 30 30 H 1.08993 * 109.47416 * 318.19433 * 14 13 12 31 31 H 1.09004 * 109.47248 * 78.19545 * 14 13 12 32 32 H 1.08997 * 109.47106 * 303.43162 * 15 14 13 33 33 H 1.09005 * 109.46528 * 63.42886 * 15 14 13 34 34 H 1.09004 * 115.54852 * 29.33458 * 16 15 14 35 35 H 1.08996 * 117.49589 * 359.97438 * 17 16 15 36 36 H 1.08994 * 117.49818 * 145.02462 * 17 16 15 37 37 H 1.08992 * 117.50191 * 214.97715 * 18 16 15 38 38 H 1.09009 * 117.49740 * 0.02562 * 18 16 15 39 39 H 1.08998 * 109.47126 * 177.14084 * 19 13 12 40 40 H 1.09002 * 109.46802 * 57.13964 * 19 13 12 41 41 H 1.09003 * 115.55083 * 28.18839 * 20 19 13 42 42 H 1.08993 * 117.49516 * 0.02562 * 21 20 19 43 43 H 1.09003 * 117.49930 * 145.02063 * 21 20 19 44 44 H 1.09001 * 117.50352 * 214.97547 * 22 20 19 45 45 H 1.08999 * 117.49922 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5654 -4.8754 0.0011 12 6 2.6484 -5.9561 0.0017 13 7 3.3774 -5.9181 1.2764 14 6 4.0489 -7.1983 1.5372 15 6 4.4032 -7.2951 3.0225 16 6 5.1778 -8.5893 3.2787 17 6 4.5303 -9.6311 4.1933 18 6 5.7272 -8.8166 4.6885 19 6 4.3367 -4.8057 1.3012 20 6 5.3876 -5.0141 0.2091 21 6 6.8419 -5.1873 0.6518 22 6 6.3968 -3.8881 -0.0243 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8895 25 1 0.6242 -2.5566 0.8904 26 1 0.9448 -4.9827 -0.8887 27 1 0.9455 -4.9822 0.8914 28 1 3.3422 -5.7756 -0.8194 29 1 2.1850 -6.9348 -0.1228 30 1 3.3840 -8.0188 1.2680 31 1 4.9600 -7.2586 0.9418 32 1 5.0185 -6.4412 3.3057 33 1 3.4881 -7.2960 3.6149 34 1 5.7730 -8.9545 2.4417 35 1 3.5526 -9.3941 4.6129 36 1 4.6994 -10.6818 3.9581 37 1 6.6835 -9.3316 4.7790 38 1 5.5364 -8.0441 5.4336 39 1 4.8263 -4.7698 2.2744 40 1 3.8101 -3.8679 1.1245 41 1 5.0555 -5.5806 -0.6610 42 1 7.0498 -5.1533 1.7212 43 1 7.4667 -5.8675 0.0728 44 1 6.7291 -3.7141 -1.0478 45 1 6.3118 -2.9987 0.6000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595870958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:20 Heat of formation + Delta-G solvation = -20.132291 kcal Electronic energy + Delta-G solvation = -20867.766910 eV Core-core repulsion = 17886.023323 eV Total energy + Delta-G solvation = -2981.743587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17045 -38.46937 -38.10659 -36.44759 -34.87129 -32.12670 -30.13122 -28.94656 -26.86269 -24.45745 -23.60478 -23.24127 -23.11158 -23.01749 -21.22237 -20.43268 -18.56490 -17.63822 -17.32213 -16.84568 -16.50297 -16.25210 -15.84072 -15.65156 -15.24589 -14.95373 -14.58160 -14.40148 -13.85256 -13.50192 -13.12068 -13.06638 -12.98407 -12.68224 -12.59248 -12.49625 -12.38203 -12.34626 -12.22180 -12.04202 -11.93688 -11.75873 -11.24834 -11.18646 -11.02959 -10.86677 -10.73852 -10.56150 -10.07943 -9.10290 -8.29897 -6.41541 1.39545 1.44200 1.52408 2.35315 2.85816 2.96452 3.03976 3.08941 3.29011 3.82528 3.89514 4.04787 4.08455 4.10732 4.12155 4.24813 4.26189 4.41336 4.42667 4.53910 4.62500 4.66945 4.77773 4.79178 4.83595 4.84788 4.87094 4.93312 5.02497 5.03641 5.09512 5.14711 5.21144 5.21965 5.23261 5.27737 5.32030 5.49166 5.57019 5.58510 6.00001 6.20305 6.34253 6.58417 6.87281 7.30312 8.82401 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.004041 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.757387 B = 6927.745797 C = 7384.617016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.393 6.393 11 C 0.058 3.942 12 C 0.064 3.936 13 N -0.541 5.541 14 C 0.060 3.940 15 C -0.076 4.076 16 C -0.152 4.152 17 C -0.180 4.180 18 C -0.183 4.183 19 C 0.083 3.917 20 C -0.184 4.184 21 C -0.157 4.157 22 C -0.186 4.186 23 H 0.270 0.730 24 H -0.019 1.019 25 H -0.020 1.020 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.215 -17.820 4.338 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.135 3.865 10 O -0.313 6.313 11 C -0.019 4.019 12 C -0.063 4.063 13 N -0.263 5.263 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.171 4.171 17 C -0.217 4.217 18 C -0.220 4.220 19 C -0.045 4.045 20 C -0.203 4.203 21 C -0.194 4.194 22 C -0.224 4.224 23 H 0.078 0.922 24 H -0.001 1.001 25 H -0.003 1.003 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.888 -17.618 4.721 21.772 hybrid contribution 0.066 0.899 -0.715 1.150 sum 11.955 -16.720 4.006 20.941 Atomic orbital electron populations 1.70071 1.07790 1.28562 1.50775 1.25942 0.95896 1.03325 0.94111 0.85287 0.78130 0.76960 0.79362 1.18999 1.20140 1.19032 1.21330 0.94003 0.90733 1.51773 0.91951 1.19748 0.88694 0.85048 0.92960 1.87829 1.34516 1.14009 1.94939 1.22588 0.95922 0.84288 0.99101 1.22182 0.95334 0.97794 0.91035 1.62124 1.27584 1.04133 1.32475 1.22150 0.97827 0.90347 0.96447 1.21019 0.98913 0.95635 0.95799 1.22246 1.03243 0.97127 0.94466 1.23092 0.97426 0.97311 1.03866 1.23015 0.98550 1.03429 0.96990 1.21900 0.91226 0.95230 0.96139 1.22855 0.91940 1.03825 1.01729 1.23053 0.95995 0.99269 1.01106 1.22893 1.04350 0.93178 1.01982 0.92166 1.00117 1.00255 0.93759 0.94424 0.93642 0.87573 0.90414 0.93607 0.92607 0.92407 0.87305 0.89151 0.87932 0.87906 0.89278 0.91296 0.90786 0.88437 0.88495 0.87735 0.88764 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.98 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -32.44 9.43 25.60 0.24 -32.20 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 12.04 5.69 71.24 0.41 12.45 16 10 O -0.39 -19.13 7.55 -148.98 -1.13 -20.26 16 11 C 0.06 2.23 6.25 71.98 0.45 2.68 16 12 C 0.06 1.90 5.40 86.30 0.47 2.37 16 13 N -0.54 -15.87 4.57 -896.25 -4.10 -19.97 16 14 C 0.06 1.32 4.81 86.30 0.42 1.74 16 15 C -0.08 -1.59 5.63 30.59 0.17 -1.42 16 16 C -0.15 -2.55 5.74 -10.79 -0.06 -2.62 16 17 C -0.18 -2.73 10.18 30.60 0.31 -2.42 16 18 C -0.18 -2.81 10.25 30.60 0.31 -2.50 16 19 C 0.08 2.68 5.30 86.30 0.46 3.14 16 20 C -0.18 -5.15 3.94 -10.80 -0.04 -5.19 16 21 C -0.16 -3.52 10.08 30.62 0.31 -3.21 16 22 C -0.19 -5.15 10.25 30.62 0.31 -4.84 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 25 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 26 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.05 1.37 5.78 -2.39 -0.01 1.36 16 29 H 0.11 2.46 7.58 -2.39 -0.02 2.44 16 30 H 0.08 1.55 7.61 -2.39 -0.02 1.53 16 31 H 0.05 0.98 6.62 -2.38 -0.02 0.96 16 32 H 0.06 1.28 6.73 -2.39 -0.02 1.27 16 33 H 0.06 1.33 7.88 -2.38 -0.02 1.31 16 34 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 35 H 0.09 1.44 8.03 -2.39 -0.02 1.42 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.07 2.11 6.44 -2.39 -0.02 2.10 16 40 H 0.07 3.12 5.44 -2.39 -0.01 3.11 16 41 H 0.10 2.75 6.20 -2.39 -0.01 2.74 16 42 H 0.10 2.05 8.03 -2.39 -0.02 2.03 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -65.27 356.65 2.24 -63.04 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.93 Total: 18.23 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 4.21 Total: -31.24 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -3.81 Total: -76.70 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.13 Total: -20.26 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.27 2.24 -63.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595870958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.904 kcal (2) G-P(sol) polarization free energy of solvation -65.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds