Wall clock time and date at job start Mon Mar 30 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20753 * 119.99943 * 2 1 4 4 C 1.50699 * 119.99815 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.59237 * 18.11282 * 4 2 1 6 6 C 1.53195 * 109.70464 * 138.47428 * 4 2 1 7 7 C 1.53043 * 109.31464 * 174.49106 * 6 4 2 8 8 C 1.53034 * 109.53627 * 298.63110 * 7 6 4 9 9 C 1.52763 * 109.38376 * 61.23962 * 8 7 6 10 10 N 1.46927 * 109.58516 * 257.82994 * 4 2 1 11 11 C 1.34779 * 120.63176 * 6.43961 * 10 4 2 12 12 O 1.21285 * 119.99723 * 355.10050 * 11 10 4 13 13 C 1.50694 * 120.00232 * 175.10007 * 11 10 4 14 14 C 1.52994 * 109.47252 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47080 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46954 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99781 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00423 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99881 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47152 * 89.99880 * 20 18 16 22 22 H 1.48501 * 109.46870 * 209.99859 * 20 18 16 23 23 H 1.48494 * 109.46950 * 330.00080 * 20 18 16 24 24 H 1.09004 * 109.46750 * 269.99802 * 1 2 3 25 25 H 1.08998 * 109.46816 * 29.99698 * 1 2 3 26 26 H 1.09004 * 109.47151 * 149.99948 * 1 2 3 27 27 H 1.09002 * 109.49449 * 294.43775 * 6 4 2 28 28 H 1.09000 * 109.50117 * 54.53293 * 6 4 2 29 29 H 1.09001 * 109.45868 * 58.65010 * 7 6 4 30 30 H 1.08998 * 109.45846 * 178.62232 * 7 6 4 31 31 H 1.09000 * 109.49699 * 181.31671 * 8 7 6 32 32 H 1.09005 * 109.50121 * 301.41599 * 8 7 6 33 33 H 1.09002 * 109.50919 * 185.70359 * 9 8 7 34 34 H 1.08993 * 109.43163 * 65.42350 * 9 8 7 35 35 H 1.09000 * 109.47243 * 300.00282 * 13 11 10 36 36 H 1.09007 * 109.47315 * 59.99685 * 13 11 10 37 37 H 1.09000 * 109.47213 * 300.00284 * 14 13 11 38 38 H 1.09000 * 109.47273 * 60.00317 * 14 13 11 39 39 H 1.08999 * 109.47167 * 299.99781 * 15 14 13 40 40 H 1.09003 * 109.46863 * 60.00596 * 15 14 13 41 41 H 0.96998 * 120.00518 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.5980 -2.1095 -0.3202 6 6 3.4538 -1.2122 -0.9567 7 6 4.2902 -2.4893 -0.8480 8 6 4.8245 -2.6312 0.5789 9 6 3.6513 -2.7369 1.5515 10 7 2.7594 -1.5864 1.3524 11 6 2.4102 -0.8006 2.3903 12 8 1.7509 0.1992 2.1989 13 6 2.8390 -1.1642 3.7884 14 6 2.3151 -0.1155 4.7715 15 6 2.7499 -0.4851 6.1912 16 6 2.2332 0.5476 7.1596 17 1 1.6532 1.3840 6.7986 18 6 2.5020 0.4251 8.5063 19 7 2.0507 1.3259 9.3516 20 14 3.5072 -1.0205 9.1305 21 1 4.9475 -0.6591 9.1293 22 1 3.0827 -1.3583 10.5129 23 1 3.2903 -2.1930 8.2455 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.0929 -1.0996 -1.9791 28 1 4.0674 -0.3516 -0.6902 29 1 3.6693 -3.3517 -1.0907 30 1 5.1263 -2.4361 -1.5452 31 1 5.4393 -3.5285 0.6496 32 1 5.4253 -1.7573 0.8311 33 1 4.0258 -2.7361 2.5752 34 1 3.1045 -3.6603 1.3611 35 1 2.4337 -2.1416 4.0502 36 1 3.9275 -1.1972 3.8377 37 1 2.7200 0.8621 4.5100 38 1 1.2267 -0.0830 4.7222 39 1 2.3446 -1.4626 6.4525 40 1 3.8383 -0.5178 6.2408 41 1 2.2401 1.2400 10.2990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615531193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:57 Heat of formation + Delta-G solvation = -88.098867 kcal Electronic energy + Delta-G solvation = -21020.387027 eV Core-core repulsion = 17899.863094 eV Total energy + Delta-G solvation = -3120.523933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97228 -38.38896 -37.49969 -34.40015 -33.14929 -32.30264 -31.70614 -29.82016 -28.48861 -25.81090 -24.08291 -23.53519 -21.16556 -20.43810 -19.77208 -18.75474 -16.98439 -16.67126 -16.23175 -15.91817 -15.44447 -15.01515 -14.56300 -14.38065 -14.13473 -14.00361 -13.74868 -13.50750 -13.17571 -12.88890 -12.62727 -12.29717 -11.98328 -11.90635 -11.73421 -11.66365 -11.36936 -11.18643 -11.07673 -10.87920 -10.79568 -9.99677 -9.81249 -9.70667 -9.45568 -9.34302 -9.13507 -8.82630 -8.50956 -6.00325 -3.98268 2.08994 2.65580 3.03027 3.31367 3.38300 3.40748 3.89701 4.40822 4.46972 4.47661 4.64320 4.72317 4.85493 4.93551 5.13205 5.14434 5.26246 5.32734 5.34946 5.45998 5.46929 5.52406 5.53294 5.57167 5.59839 5.71781 5.77136 6.01695 6.03620 6.07851 6.31354 6.53679 6.66723 6.90469 7.22541 7.37033 7.44483 7.78170 7.82385 8.19197 8.59440 9.06474 9.61490 11.13428 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.004467 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.581733 B = 6266.220052 C = 7084.415832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.376 3.624 3 O -0.453 6.453 4 C 0.094 3.906 5 H 0.089 0.911 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.139 4.139 9 C 0.108 3.892 10 N -0.608 5.608 11 C 0.511 3.489 12 O -0.510 6.510 13 C -0.135 4.135 14 C -0.088 4.088 15 C -0.013 4.013 16 C -0.519 4.519 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 -13.350 -22.318 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.251 3.749 3 O -0.326 6.326 4 C -0.010 4.010 5 H 0.107 0.893 6 C -0.165 4.165 7 C -0.154 4.154 8 C -0.177 4.177 9 C -0.015 4.015 10 N -0.346 5.346 11 C 0.302 3.698 12 O -0.386 6.386 13 C -0.175 4.175 14 C -0.126 4.126 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.118 0.882 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.851 -12.193 -22.215 25.501 hybrid contribution 0.552 -0.945 0.474 1.193 sum 3.402 -13.138 -21.741 25.629 Atomic orbital electron populations 1.22221 0.94276 1.03420 1.05033 1.23851 0.91706 0.89064 0.70283 1.90379 1.71370 1.34363 1.36466 1.21847 0.96456 0.98503 0.84191 0.89269 1.21855 0.96512 0.99492 0.98592 1.21495 0.99643 0.97431 0.96866 1.21881 0.97712 1.03038 0.95072 1.21716 0.90719 0.88069 1.00998 1.48315 1.49845 1.30392 1.06026 1.21424 0.79003 0.82055 0.87360 1.90667 1.39808 1.25454 1.82634 1.21879 1.02615 1.02752 0.90263 1.21295 1.00862 0.96518 0.93935 1.19600 0.95934 0.97258 0.92290 1.21153 1.34022 1.09438 0.91067 0.90944 1.25047 0.95611 0.96034 0.96906 1.69919 1.46327 1.35150 1.02939 0.86765 0.80698 0.83670 0.78030 1.20340 1.21428 1.19072 0.88162 0.90116 0.90922 0.90739 0.90306 0.91619 0.91314 0.90343 0.91162 0.88786 0.91082 0.89085 0.89237 0.92010 0.92026 0.96660 0.97121 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 10.08 36.01 0.36 -1.84 16 2 C 0.38 5.28 3.69 -29.03 -0.11 5.18 16 3 O -0.45 -8.32 15.89 -17.35 -0.28 -8.60 16 4 C 0.09 1.02 3.25 -68.75 -0.22 0.80 16 5 H 0.09 0.73 7.94 -51.93 -0.41 0.31 16 6 C -0.13 -1.18 5.20 -26.61 -0.14 -1.32 16 7 C -0.12 -0.81 5.89 -26.69 -0.16 -0.96 16 8 C -0.14 -1.01 6.06 -26.84 -0.16 -1.17 16 9 C 0.11 0.90 6.30 -3.93 -0.02 0.87 16 10 N -0.61 -7.24 2.98 -166.79 -0.50 -7.74 16 11 C 0.51 8.04 7.62 -10.99 -0.08 7.96 16 12 O -0.51 -9.88 11.21 -17.80 -0.20 -10.08 16 13 C -0.14 -2.09 4.10 -27.89 -0.11 -2.21 16 14 C -0.09 -1.83 4.44 -26.73 -0.12 -1.95 16 15 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 16 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 17 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -28.48 13.96 55.43 0.77 -27.70 16 20 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 24 H 0.10 1.32 7.42 -51.93 -0.39 0.93 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.58 7.98 -51.93 -0.41 0.16 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.76 5.96 -51.93 -0.31 0.45 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 36 H 0.09 1.24 7.47 -51.93 -0.39 0.85 16 37 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 38 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 39 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -35.74 324.94 -8.17 -43.90 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.89 Total: -2.93 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.31 Total: -8.80 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.28 Total: -35.45 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.48 Total: -18.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.74 -8.17 -43.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615531193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.194 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds