Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20753 * 119.99943 * 2 1 4 4 C 1.50699 * 119.99815 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.59237 * 18.11282 * 4 2 1 6 6 C 1.53195 * 109.70464 * 138.47428 * 4 2 1 7 7 C 1.53043 * 109.31464 * 174.49106 * 6 4 2 8 8 C 1.53034 * 109.53627 * 298.63110 * 7 6 4 9 9 C 1.52763 * 109.38376 * 61.23962 * 8 7 6 10 10 N 1.46927 * 109.58516 * 257.82994 * 4 2 1 11 11 C 1.34779 * 120.63176 * 6.43961 * 10 4 2 12 12 O 1.21285 * 119.99723 * 355.10050 * 11 10 4 13 13 C 1.50694 * 120.00232 * 175.10007 * 11 10 4 14 14 C 1.52994 * 109.47252 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47080 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46954 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99781 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00423 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99881 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47152 * 89.99880 * 20 18 16 22 22 H 1.48501 * 109.46870 * 209.99859 * 20 18 16 23 23 H 1.48494 * 109.46950 * 330.00080 * 20 18 16 24 24 H 1.09004 * 109.46750 * 269.99802 * 1 2 3 25 25 H 1.08998 * 109.46816 * 29.99698 * 1 2 3 26 26 H 1.09004 * 109.47151 * 149.99948 * 1 2 3 27 27 H 1.09002 * 109.49449 * 294.43775 * 6 4 2 28 28 H 1.09000 * 109.50117 * 54.53293 * 6 4 2 29 29 H 1.09001 * 109.45868 * 58.65010 * 7 6 4 30 30 H 1.08998 * 109.45846 * 178.62232 * 7 6 4 31 31 H 1.09000 * 109.49699 * 181.31671 * 8 7 6 32 32 H 1.09005 * 109.50121 * 301.41599 * 8 7 6 33 33 H 1.09002 * 109.50919 * 185.70359 * 9 8 7 34 34 H 1.08993 * 109.43163 * 65.42350 * 9 8 7 35 35 H 1.09000 * 109.47243 * 300.00282 * 13 11 10 36 36 H 1.09007 * 109.47315 * 59.99685 * 13 11 10 37 37 H 1.09000 * 109.47213 * 300.00284 * 14 13 11 38 38 H 1.09000 * 109.47273 * 60.00317 * 14 13 11 39 39 H 1.08999 * 109.47167 * 299.99781 * 15 14 13 40 40 H 1.09003 * 109.46863 * 60.00596 * 15 14 13 41 41 H 0.96998 * 120.00518 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.5980 -2.1095 -0.3202 6 6 3.4538 -1.2122 -0.9567 7 6 4.2902 -2.4893 -0.8480 8 6 4.8245 -2.6312 0.5789 9 6 3.6513 -2.7369 1.5515 10 7 2.7594 -1.5864 1.3524 11 6 2.4102 -0.8006 2.3903 12 8 1.7509 0.1992 2.1989 13 6 2.8390 -1.1642 3.7884 14 6 2.3151 -0.1155 4.7715 15 6 2.7499 -0.4851 6.1912 16 6 2.2332 0.5476 7.1596 17 1 1.6532 1.3840 6.7986 18 6 2.5020 0.4251 8.5063 19 7 2.0507 1.3259 9.3516 20 14 3.5072 -1.0205 9.1305 21 1 4.9475 -0.6591 9.1293 22 1 3.0827 -1.3583 10.5129 23 1 3.2903 -2.1930 8.2455 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.0929 -1.0996 -1.9791 28 1 4.0674 -0.3516 -0.6902 29 1 3.6693 -3.3517 -1.0907 30 1 5.1263 -2.4361 -1.5452 31 1 5.4393 -3.5285 0.6496 32 1 5.4253 -1.7573 0.8311 33 1 4.0258 -2.7361 2.5752 34 1 3.1045 -3.6603 1.3611 35 1 2.4337 -2.1416 4.0502 36 1 3.9275 -1.1972 3.8377 37 1 2.7200 0.8621 4.5100 38 1 1.2267 -0.0830 4.7222 39 1 2.3446 -1.4626 6.4525 40 1 3.8383 -0.5178 6.2408 41 1 2.2401 1.2400 10.2990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615531193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = -111.132060 kcal Electronic energy + Delta-G solvation = -21021.385821 eV Core-core repulsion = 17899.863094 eV Total energy + Delta-G solvation = -3121.522727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.99892 -39.58967 -38.41055 -36.19631 -34.33269 -33.83823 -32.81691 -30.70322 -30.18470 -26.86619 -25.36391 -24.59991 -22.49260 -21.53155 -21.00349 -19.83270 -18.84590 -18.01673 -17.26229 -17.01983 -16.51804 -16.27307 -15.92658 -15.50137 -15.38298 -14.91407 -14.84720 -14.67967 -14.57643 -14.12121 -13.79738 -13.70726 -13.30669 -13.10350 -12.90159 -12.69752 -12.50575 -12.42747 -12.09623 -11.79425 -11.74134 -11.73099 -11.61702 -11.50899 -11.32036 -10.75700 -10.72218 -10.40819 -9.73009 -8.28075 -6.34325 1.05693 1.38402 1.42328 1.50251 1.54360 2.06208 2.39089 2.98034 3.07040 3.60144 3.81606 3.87081 4.05341 4.06608 4.09851 4.19127 4.25556 4.27627 4.49198 4.59081 4.61991 4.66894 4.75508 4.83785 4.85862 4.88746 4.92067 5.00958 5.05844 5.11829 5.14972 5.23656 5.44843 5.47841 5.53988 5.57805 5.66843 6.23361 6.30631 6.74077 6.74468 7.08283 7.30166 8.89854 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.004467 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.581733 B = 6266.220052 C = 7084.415832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.368 3.632 3 O -0.509 6.509 4 C 0.091 3.909 5 H 0.131 0.869 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.138 4.138 9 C 0.098 3.902 10 N -0.599 5.599 11 C 0.502 3.498 12 O -0.561 6.561 13 C -0.123 4.123 14 C -0.080 4.080 15 C -0.007 4.007 16 C -0.542 4.542 17 H 0.016 0.984 18 C -0.004 4.004 19 N -0.958 5.958 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.232 1.232 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.027 0.973 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.028 0.972 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -18.383 -23.626 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.247 3.753 3 O -0.386 6.386 4 C -0.013 4.013 5 H 0.149 0.851 6 C -0.162 4.162 7 C -0.149 4.149 8 C -0.176 4.176 9 C -0.023 4.023 10 N -0.335 5.335 11 C 0.293 3.707 12 O -0.441 6.441 13 C -0.162 4.162 14 C -0.118 4.118 15 C -0.044 4.044 16 C -0.579 4.579 17 H 0.034 0.966 18 C -0.199 4.199 19 N -0.599 5.599 20 Si 0.785 3.215 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.155 1.155 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.409 -17.283 -23.573 29.561 hybrid contribution 0.001 0.732 0.826 1.103 sum 4.411 -16.551 -22.748 28.475 Atomic orbital electron populations 1.22243 0.92926 1.05455 1.04244 1.24637 0.92969 0.89703 0.67948 1.90355 1.72614 1.36647 1.38977 1.22071 0.97461 0.97716 0.84008 0.85113 1.21860 0.95846 0.99686 0.98858 1.21509 0.99874 0.96565 0.96918 1.21902 0.97348 1.03362 0.94944 1.22119 0.90785 0.87550 1.01844 1.48353 1.49323 1.30375 1.05423 1.21469 0.78904 0.81948 0.88396 1.90668 1.42291 1.27693 1.83456 1.21712 1.03862 1.01910 0.88755 1.21042 0.99467 0.96998 0.94285 1.19531 0.96605 0.96085 0.92218 1.21547 1.33900 1.09563 0.92937 0.96587 1.26223 0.96970 0.99889 0.96853 1.70110 1.48231 1.37989 1.03555 0.85478 0.78609 0.79734 0.77686 1.19052 1.21138 1.15460 0.90098 0.90499 0.86600 0.89251 0.94036 0.89044 0.90389 0.87500 0.93475 0.88171 0.87785 0.85707 0.86933 0.95371 0.94253 0.94654 0.95417 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.35 10.08 71.24 0.72 -3.63 16 2 C 0.37 10.43 3.69 29.10 0.11 10.54 16 3 O -0.51 -19.84 15.89 20.90 0.33 -19.51 16 4 C 0.09 1.76 3.25 44.23 0.14 1.91 16 5 H 0.13 1.50 7.94 -2.39 -0.02 1.48 16 6 C -0.12 -2.08 5.20 30.67 0.16 -1.92 16 7 C -0.11 -1.08 5.89 30.62 0.18 -0.90 16 8 C -0.14 -1.45 6.06 30.53 0.19 -1.27 16 9 C 0.10 1.18 6.30 86.22 0.54 1.73 16 10 N -0.60 -12.77 2.98 -800.00 -2.38 -15.16 16 11 C 0.50 15.47 7.62 87.65 0.67 16.13 16 12 O -0.56 -22.73 11.21 19.29 0.22 -22.51 16 13 C -0.12 -3.56 4.10 29.84 0.12 -3.44 16 14 C -0.08 -3.38 4.44 30.59 0.14 -3.25 16 15 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 16 C -0.54 -32.94 9.66 25.60 0.25 -32.70 16 17 H 0.02 1.10 7.99 -2.91 -0.02 1.07 16 18 C 0.00 -0.21 5.47 84.65 0.46 0.25 16 19 N -0.96 -62.44 13.96 21.44 0.30 -62.14 16 20 Si 0.96 43.81 27.47 68.60 1.88 45.70 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.23 -9.24 6.54 99.48 0.65 -8.58 16 24 H 0.08 2.21 7.42 -2.38 -0.02 2.19 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.12 1.53 7.98 -2.39 -0.02 1.51 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.01 7.72 -2.39 -0.02 0.99 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 33 H 0.10 1.12 5.96 -2.39 -0.01 1.11 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.12 2.78 8.11 -2.39 -0.02 2.76 16 36 H 0.11 2.75 7.47 -2.38 -0.02 2.73 16 37 H 0.03 1.34 8.10 -2.39 -0.02 1.32 16 38 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 39 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 40 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 41 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -86.09 324.94 5.08 -81.01 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.94 Total: 9.38 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 3.79 Total: -16.76 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.08 Total: -77.30 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: 0.55 Total: -42.03 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -86.09 5.08 -81.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615531193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.123 kcal (2) G-P(sol) polarization free energy of solvation -86.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds