Wall clock time and date at job start Mon Mar 30 2020 06:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20760 * 120.00290 * 2 1 4 4 C 1.50702 * 120.00267 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.58511 * 343.28319 * 4 2 1 6 6 C 1.53184 * 109.58982 * 222.84891 * 4 2 1 7 7 C 1.53038 * 109.31524 * 185.57870 * 6 4 2 8 8 C 1.53041 * 109.53815 * 61.36521 * 7 6 4 9 9 C 1.53618 * 109.24112 * 298.51177 * 8 7 6 10 10 N 1.46928 * 108.54469 * 54.85751 * 9 8 7 11 11 C 1.34777 * 120.63139 * 126.36976 * 10 9 8 12 12 O 1.21279 * 120.00177 * 174.12257 * 11 10 9 13 13 C 1.50704 * 119.99986 * 354.11049 * 11 10 9 14 14 C 1.52991 * 109.46966 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47209 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47639 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99752 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00471 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99558 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00082 * 180.27580 * 18 16 15 21 21 H 1.48493 * 109.47211 * 269.72296 * 20 18 16 22 22 H 1.48497 * 109.47281 * 29.72594 * 20 18 16 23 23 H 1.48505 * 109.46877 * 149.72652 * 20 18 16 24 24 H 1.08992 * 109.47007 * 269.99737 * 1 2 3 25 25 H 1.08996 * 109.46862 * 30.00262 * 1 2 3 26 26 H 1.09004 * 109.46754 * 150.00126 * 1 2 3 27 27 H 1.09003 * 109.50268 * 305.52895 * 6 4 2 28 28 H 1.09004 * 109.49881 * 65.59395 * 6 4 2 29 29 H 1.09004 * 109.46226 * 181.38497 * 7 6 4 30 30 H 1.09000 * 109.45769 * 301.35614 * 7 6 4 31 31 H 1.08993 * 109.49972 * 58.59141 * 8 7 6 32 32 H 1.09005 * 109.49579 * 178.65464 * 8 7 6 33 33 H 1.09006 * 109.74301 * 295.11883 * 9 8 7 34 34 H 1.09007 * 109.66509 * 174.55298 * 9 8 7 35 35 H 1.09004 * 109.46600 * 60.00491 * 13 11 10 36 36 H 1.08994 * 109.47502 * 300.00802 * 13 11 10 37 37 H 1.09004 * 109.47313 * 60.00618 * 14 13 11 38 38 H 1.08996 * 109.47664 * 300.00065 * 14 13 11 39 39 H 1.09004 * 109.46781 * 59.99922 * 15 14 13 40 40 H 1.09001 * 109.47139 * 299.99973 * 15 14 13 41 41 H 0.97008 * 119.99828 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 0.0006 5 1 1.5915 -2.1132 0.2963 6 6 3.4337 -1.2204 0.9820 7 6 4.2752 -2.4942 0.8762 8 6 4.8391 -2.6188 -0.5410 9 6 3.6775 -2.7228 -1.5408 10 7 2.7879 -1.5699 -1.3450 11 6 2.4574 -0.7738 -2.3811 12 8 1.6400 0.1094 -2.2305 13 6 3.1037 -0.9809 -3.7266 14 6 2.5573 0.0477 -4.7186 15 6 3.2130 -0.1629 -6.0848 16 6 2.6743 0.8498 -7.0622 17 1 1.9382 1.5719 -6.7408 18 6 3.1219 0.8554 -8.3662 19 7 4.0186 -0.0235 -8.7573 20 14 2.4598 2.1157 -9.5756 21 1 1.2609 1.5654 -10.2573 22 1 2.0893 3.3549 -8.8460 23 1 3.5032 2.4288 -10.5850 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.0506 -0.3555 0.7379 28 1 3.0516 -1.1195 1.9979 29 1 5.0967 -2.4472 1.5911 30 1 3.6515 -3.3607 1.0962 31 1 5.4428 -1.7410 -0.7709 32 1 5.4578 -3.5137 -0.6090 33 1 3.1236 -3.6454 -1.3671 34 1 4.0677 -2.7146 -2.5586 35 1 2.8816 -1.9859 -4.0855 36 1 4.1828 -0.8584 -3.6341 37 1 2.7797 1.0526 -4.3596 38 1 1.4781 -0.0744 -4.8113 39 1 2.9901 -1.1678 -6.4437 40 1 4.2922 -0.0410 -5.9926 41 1 4.3339 -0.0194 -9.6747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615609977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:59 Heat of formation + Delta-G solvation = -113.983655 kcal Electronic energy + Delta-G solvation = -20971.319306 eV Core-core repulsion = 17849.672924 eV Total energy + Delta-G solvation = -3121.646382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99753 -39.61290 -38.38787 -36.18819 -34.30036 -33.78170 -32.75326 -30.68464 -29.77146 -26.83674 -25.52899 -24.64115 -22.69814 -21.49938 -21.01653 -19.83154 -18.51900 -17.97715 -17.30458 -16.93215 -16.55906 -16.45756 -15.91085 -15.54150 -15.30033 -14.90689 -14.86150 -14.67024 -14.24191 -14.08363 -13.76669 -13.68268 -13.17677 -13.10247 -12.91133 -12.64233 -12.53647 -12.45153 -12.40205 -12.09154 -11.74744 -11.65885 -11.60268 -11.47157 -11.24273 -10.74830 -10.55701 -10.41612 -9.73677 -8.21818 -6.31687 1.02282 1.38237 1.39414 1.49764 1.51064 2.05037 2.40496 2.97423 3.11192 3.61472 3.80261 3.87094 4.04888 4.06838 4.12498 4.18907 4.22861 4.28264 4.48140 4.58998 4.62781 4.67568 4.75606 4.83077 4.86667 4.91335 5.03402 5.05849 5.12947 5.15083 5.16071 5.23822 5.44465 5.47692 5.51952 5.72156 5.83918 6.19820 6.27625 6.71158 6.82868 7.04473 7.36919 8.89715 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.004180 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.665793 B = 6697.029345 C = 7458.269712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.370 3.630 3 O -0.513 6.513 4 C 0.091 3.909 5 H 0.130 0.870 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.137 4.137 9 C 0.098 3.902 10 N -0.600 5.600 11 C 0.507 3.493 12 O -0.557 6.557 13 C -0.122 4.122 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.549 4.549 17 H 0.048 0.952 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.961 3.039 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.277 1.277 24 H 0.117 0.883 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.006 0.994 40 H -0.001 1.001 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -11.967 21.986 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.249 3.751 3 O -0.390 6.390 4 C -0.013 4.013 5 H 0.147 0.853 6 C -0.162 4.162 7 C -0.148 4.148 8 C -0.175 4.175 9 C -0.023 4.023 10 N -0.336 5.336 11 C 0.298 3.702 12 O -0.437 6.437 13 C -0.162 4.162 14 C -0.119 4.119 15 C -0.009 4.009 16 C -0.587 4.587 17 H 0.067 0.933 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.202 1.202 24 H 0.135 0.865 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.017 0.983 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.457 -11.027 21.927 24.587 hybrid contribution -0.168 0.982 -1.022 1.427 sum -1.625 -10.046 20.905 23.250 Atomic orbital electron populations 1.22131 0.92616 1.04421 1.04807 1.24672 0.93139 0.89531 0.67725 1.90363 1.72652 1.36601 1.39407 1.22066 0.97332 0.97947 0.83925 0.85284 1.21867 0.95999 0.99690 0.98665 1.21505 0.99805 0.96704 0.96796 1.22040 0.97238 1.03317 0.94912 1.22281 0.91025 0.87441 1.01574 1.48354 1.49213 1.29870 1.06131 1.21332 0.81359 0.80270 0.87273 1.90606 1.35921 1.34881 1.82264 1.21649 1.01557 1.02631 0.90320 1.21156 0.99233 0.96903 0.94596 1.18998 0.94780 0.95774 0.91350 1.21663 1.24129 1.16754 0.96145 0.93349 1.25872 0.95225 0.97920 1.00234 1.70059 1.31339 1.37150 1.18215 0.85515 0.78359 0.79193 0.78413 1.19464 1.19599 1.20186 0.86520 0.92093 0.88975 0.93870 0.88939 0.90225 0.89102 0.93343 0.87748 0.87817 0.88705 0.86640 0.88107 0.95029 0.93708 0.97585 0.98312 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 9.50 71.24 0.68 -3.46 16 2 C 0.37 10.56 3.63 29.10 0.11 10.66 16 3 O -0.51 -19.90 16.19 20.00 0.32 -19.57 16 4 C 0.09 1.85 3.24 44.23 0.14 1.99 16 5 H 0.13 1.65 8.05 -2.39 -0.02 1.64 16 6 C -0.12 -2.15 5.21 30.67 0.16 -1.99 16 7 C -0.11 -1.21 5.88 30.62 0.18 -1.03 16 8 C -0.14 -1.74 6.10 30.82 0.19 -1.56 16 9 C 0.10 1.47 6.38 86.51 0.55 2.02 16 10 N -0.60 -14.06 2.97 -798.33 -2.37 -16.42 16 11 C 0.51 16.74 7.55 87.66 0.66 17.41 16 12 O -0.56 -22.73 11.79 18.42 0.22 -22.51 16 13 C -0.12 -4.10 4.06 29.85 0.12 -3.97 16 14 C -0.08 -3.66 4.44 30.59 0.14 -3.53 16 15 C 0.03 1.51 4.97 29.85 0.15 1.66 16 16 C -0.55 -32.86 9.11 25.60 0.23 -32.62 16 17 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 18 C 0.01 0.33 5.46 84.65 0.46 0.80 16 19 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 20 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 27 H 0.04 1.06 7.72 -2.39 -0.02 1.05 16 28 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.09 1.47 5.93 -2.38 -0.01 1.45 16 35 H 0.12 3.25 7.70 -2.38 -0.02 3.23 16 36 H 0.10 3.15 7.93 -2.39 -0.02 3.13 16 37 H 0.03 1.55 8.10 -2.38 -0.02 1.53 16 38 H 0.04 2.09 8.10 -2.39 -0.02 2.07 16 39 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -79.58 329.74 5.24 -74.34 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.99 Total: 6.27 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 3.77 Total: -13.63 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -2.08 Total: -72.67 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: 0.54 Total: -42.09 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -79.58 5.24 -74.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615609977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.646 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds