Wall clock time and date at job start Mon Mar 30 2020 07:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48501 * 109.46922 * 240.00159 * 3 2 1 5 5 H 1.48496 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47045 * 120.00159 * 3 2 1 7 7 C 1.37880 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46668 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46622 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 H 1.09007 * 110.54594 * 59.30023 * 13 12 11 15 15 C 1.55013 * 110.61249 * 182.16286 * 13 12 11 16 16 C 1.54865 * 102.09879 * 155.40931 * 15 13 12 17 17 C 1.53889 * 104.10066 * 339.14604 * 16 15 13 18 18 C 1.52758 * 109.70926 * 238.58175 * 17 16 15 19 19 C 1.53040 * 109.48161 * 179.84339 * 18 17 16 20 20 C 1.52999 * 109.45106 * 59.54069 * 19 18 17 21 21 C 1.53003 * 109.52578 * 299.75142 * 20 19 18 22 22 C 1.52784 * 109.68501 * 117.44387 * 17 16 15 23 23 O 1.43670 * 107.61600 * 358.16789 * 17 16 15 24 24 H 0.97002 * 120.00167 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46796 * 60.00646 * 9 7 2 26 26 H 1.08995 * 109.47490 * 300.00251 * 9 7 2 27 27 H 1.08990 * 109.46924 * 60.00357 * 10 9 7 28 28 H 1.09004 * 109.46978 * 300.00234 * 10 9 7 29 29 H 1.00896 * 111.00219 * 303.95583 * 11 10 9 30 30 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 31 31 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 32 32 H 1.09002 * 110.90447 * 273.60603 * 15 13 12 33 33 H 1.08996 * 110.90507 * 37.17685 * 15 13 12 34 34 H 1.09004 * 110.50210 * 97.79914 * 16 15 13 35 35 H 1.08996 * 110.50225 * 220.49003 * 16 15 13 36 36 H 1.08999 * 109.47164 * 299.84959 * 18 17 16 37 37 H 1.09002 * 109.46959 * 59.84395 * 18 17 16 38 38 H 1.08999 * 109.47940 * 299.54362 * 19 18 17 39 39 H 1.09002 * 109.47775 * 179.53342 * 19 18 17 40 40 H 1.09002 * 109.46183 * 179.73798 * 20 19 18 41 41 H 1.08991 * 109.45511 * 59.76607 * 20 19 18 42 42 H 1.08999 * 109.47702 * 300.26761 * 21 20 19 43 43 H 1.08996 * 109.47632 * 180.24488 * 21 20 19 44 44 H 1.08995 * 109.46712 * 300.18523 * 22 17 16 45 45 H 1.09000 * 109.46767 * 60.18071 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 1.6353 -7.3800 -0.0018 14 1 0.9907 -7.4334 -0.8792 15 6 2.5858 -8.6033 0.0523 16 6 1.6780 -9.6924 0.6753 17 6 0.5675 -8.8955 1.3823 18 6 0.5510 -9.2433 2.8697 19 6 -0.5523 -8.4452 3.5682 20 6 -1.9046 -8.7875 2.9395 21 6 -1.8839 -8.4252 1.4531 22 6 -0.7839 -9.2236 0.7496 23 8 0.8569 -7.4990 1.2089 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8894 28 1 2.8721 -3.6042 -0.8905 29 1 0.8741 -4.9846 0.7799 30 1 3.0633 -6.0344 -0.8918 31 1 3.0634 -6.0353 0.8882 32 1 2.9072 -8.8908 -0.9488 33 1 3.4451 -8.4002 0.6914 34 1 1.2555 -10.3282 -0.1028 35 1 2.2373 -10.2894 1.3956 36 1 0.3607 -10.3096 2.9914 37 1 1.5155 -8.9935 3.3119 38 1 -0.3578 -7.3789 3.4535 39 1 -0.5695 -8.6996 4.6280 40 1 -2.6911 -8.2226 3.4400 41 1 -2.0969 -9.8545 3.0506 42 1 -1.6870 -7.3590 1.3416 43 1 -2.8490 -8.6653 1.0071 44 1 -0.7634 -8.9602 -0.3079 45 1 -0.9849 -10.2897 0.8546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691791154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:54 Heat of formation + Delta-G solvation = -101.309559 kcal Electronic energy + Delta-G solvation = -21056.379126 eV Core-core repulsion = 18071.115428 eV Total energy + Delta-G solvation = -2985.263697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33773 -38.08718 -36.87975 -35.00346 -33.14939 -32.46574 -31.70482 -30.62820 -27.92330 -25.82847 -23.86024 -23.70964 -22.58171 -21.95384 -21.67125 -20.25296 -18.51636 -17.59818 -17.06269 -16.54914 -16.18077 -15.97036 -15.59256 -15.41764 -14.93958 -14.76899 -14.58200 -14.21946 -13.95918 -13.67975 -13.42729 -13.11019 -13.05362 -12.88213 -12.81034 -12.60502 -12.51608 -12.36637 -12.05164 -12.02008 -11.92249 -11.74704 -11.44083 -11.38268 -11.19965 -11.13896 -10.86385 -10.57189 -10.30679 -9.30734 -8.20749 -6.33281 1.39590 1.43672 1.51645 2.40192 2.88678 3.12200 3.30949 3.63085 3.76033 3.82702 3.97534 4.08602 4.12558 4.24977 4.31803 4.40200 4.45282 4.53570 4.54246 4.60227 4.64854 4.67265 4.72647 4.78277 4.87491 4.94802 4.96712 4.98798 5.04688 5.11348 5.15343 5.24456 5.31815 5.32865 5.38964 5.42178 5.48537 5.60492 5.64380 5.76589 6.11097 6.19881 6.28333 6.49663 6.83531 7.36099 8.91494 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.003627 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.000447 B = 7717.605732 C = 8347.225267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.084 3.916 11 N -0.696 5.696 12 C 0.068 3.932 13 C 0.079 3.921 14 H 0.066 0.934 15 C -0.142 4.142 16 C -0.140 4.140 17 C 0.096 3.904 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.124 4.124 23 O -0.380 6.380 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.014 1.014 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.338 0.662 30 H 0.088 0.912 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -24.895 3.623 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.045 4.045 11 N -0.326 5.326 12 C -0.061 4.061 13 C 0.022 3.978 14 H 0.084 0.916 15 C -0.180 4.180 16 C -0.177 4.177 17 C 0.057 3.943 18 C -0.142 4.142 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.162 4.162 23 O -0.300 6.300 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.004 0.996 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.649 -24.627 3.077 24.874 hybrid contribution 0.369 1.250 0.730 1.494 sum 2.018 -23.378 3.807 23.771 Atomic orbital electron populations 1.70118 1.07950 1.27932 1.51252 1.26024 0.95784 1.03521 0.94464 0.85430 0.78213 0.77696 0.79265 1.18949 1.20691 1.19115 1.21586 0.93569 0.92178 1.51248 0.92003 1.18911 0.94297 0.92488 0.94818 1.21792 0.95579 0.88478 0.98662 1.60512 1.20163 1.01849 1.50109 1.22056 0.94067 0.89138 1.00883 1.23157 0.92008 0.94345 0.88326 0.91599 1.23117 0.98232 0.93781 1.02914 1.22994 0.95987 0.97963 1.00769 1.22130 0.94623 0.81305 0.96227 1.21645 0.98997 1.00866 0.92695 1.21475 0.95092 0.99644 0.99493 1.21496 0.96829 1.01794 0.95001 1.21455 0.98496 0.99637 0.96113 1.21951 0.94185 1.00948 0.99102 1.88939 1.73111 1.25246 1.42716 0.92695 0.98783 0.99555 0.96671 0.91963 0.84467 0.89335 0.95349 0.88599 0.90503 0.89217 0.89046 0.88808 0.91997 0.94112 0.91190 0.92467 0.90467 0.94139 0.91638 0.92549 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -32.50 9.11 25.60 0.23 -32.27 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.83 5.23 29.85 0.16 1.99 16 10 C 0.08 3.79 5.62 86.31 0.49 4.27 16 11 N -0.70 -27.41 6.50 -513.86 -3.34 -30.75 16 12 C 0.07 2.05 5.47 86.30 0.47 2.53 16 13 C 0.08 2.03 3.53 31.28 0.11 2.14 16 14 H 0.07 1.78 8.12 -2.38 -0.02 1.77 16 15 C -0.14 -2.53 6.59 31.92 0.21 -2.32 16 16 C -0.14 -2.12 6.26 31.53 0.20 -1.92 16 17 C 0.10 1.93 0.71 -10.65 -0.01 1.92 16 18 C -0.10 -1.87 4.72 30.53 0.14 -1.73 16 19 C -0.12 -2.45 5.80 30.61 0.18 -2.27 16 20 C -0.11 -2.14 5.91 30.59 0.18 -1.96 16 21 C -0.12 -2.60 5.80 30.61 0.18 -2.42 16 22 C -0.12 -2.35 4.65 30.54 0.14 -2.21 16 23 O -0.38 -10.58 8.94 -148.98 -1.33 -11.91 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.34 13.96 8.30 -89.70 -0.74 13.22 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.09 1.11 7.68 -2.39 -0.02 1.09 16 35 H 0.09 1.12 7.69 -2.39 -0.02 1.10 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 1.09 7.76 -2.39 -0.02 1.07 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.15 7.75 -2.39 -0.02 1.13 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -67.84 347.97 0.96 -66.88 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.18 Total: 20.75 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.14 Total: -33.79 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -3.06 Total: -89.24 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.33 Total: -11.91 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.84 0.96 -66.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691791154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.425 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds