Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99851 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00207 * 3 2 1 5 5 H 1.48500 * 109.47350 * 30.00120 * 3 2 1 6 6 H 1.48502 * 109.47313 * 150.00201 * 3 2 1 7 7 C 1.37871 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00089 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47306 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99880 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46962 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.54674 * 307.86314 * 13 12 11 15 15 C 1.55002 * 110.61047 * 185.00203 * 13 12 11 16 16 C 1.54868 * 102.10300 * 204.44057 * 15 13 12 17 17 C 1.53886 * 104.21700 * 20.77901 * 16 15 13 18 18 C 1.52770 * 109.69550 * 242.62362 * 17 16 15 19 19 C 1.53049 * 109.46814 * 179.77615 * 18 17 16 20 20 C 1.52999 * 109.44403 * 59.55341 * 19 18 17 21 21 C 1.52997 * 109.53652 * 299.76063 * 20 19 18 22 22 C 1.52765 * 109.71962 * 121.47972 * 17 16 15 23 23 O 1.43844 * 107.37419 * 2.07810 * 17 16 15 24 24 H 0.96999 * 119.99884 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47084 * 60.00204 * 9 7 2 26 26 H 1.08998 * 109.47535 * 300.00248 * 9 7 2 27 27 H 1.08996 * 109.47334 * 60.00043 * 10 9 7 28 28 H 1.09000 * 109.47463 * 299.99720 * 10 9 7 29 29 H 1.00901 * 111.00012 * 56.05019 * 11 10 9 30 30 H 1.08992 * 109.47244 * 60.00421 * 12 11 10 31 31 H 1.09001 * 109.47283 * 300.00057 * 12 11 10 32 32 H 1.08995 * 110.90651 * 86.24019 * 15 13 12 33 33 H 1.09004 * 110.93904 * 322.65159 * 15 13 12 34 34 H 1.09002 * 110.50703 * 139.50228 * 16 15 13 35 35 H 1.09000 * 110.50419 * 262.05791 * 16 15 13 36 36 H 1.09004 * 109.47287 * 299.78136 * 18 17 16 37 37 H 1.09004 * 109.47004 * 59.78003 * 18 17 16 38 38 H 1.08997 * 109.47446 * 299.55919 * 19 18 17 39 39 H 1.09000 * 109.47707 * 179.54482 * 19 18 17 40 40 H 1.08994 * 109.45829 * 179.74424 * 20 19 18 41 41 H 1.08996 * 109.44994 * 59.77292 * 20 19 18 42 42 H 1.09000 * 109.48155 * 300.24646 * 21 20 19 43 43 H 1.09002 * 109.47705 * 180.23035 * 21 20 19 44 44 H 1.09009 * 109.47299 * 300.20394 * 22 17 16 45 45 H 1.08998 * 109.47019 * 60.20451 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4905 -2.6365 -0.0022 12 6 6.0169 -4.0080 -0.0027 13 6 7.5465 -3.9671 -0.0020 14 1 7.9125 -3.3302 -0.8073 15 6 8.1305 -5.3973 -0.1290 16 6 9.5310 -5.2341 0.5117 17 6 9.4038 -3.9712 1.3817 18 6 10.3610 -2.8956 0.8710 19 6 10.2262 -1.6404 1.7362 20 6 10.5596 -1.9851 3.1891 21 6 9.5901 -3.0543 3.6967 22 6 9.7233 -4.3128 2.8360 23 8 8.0454 -3.5105 1.2741 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1498 -0.8924 28 1 3.6586 -3.1510 0.8875 29 1 5.8521 -2.1111 0.7796 30 1 5.6676 -4.5309 -0.8929 31 1 5.6674 -4.5317 0.8870 32 1 8.2133 -5.6921 -1.1751 33 1 7.5288 -6.1148 0.4290 34 1 9.7720 -6.1000 1.1284 35 1 10.2891 -5.0924 -0.2586 36 1 11.3850 -3.2655 0.9241 37 1 10.1158 -2.6523 -0.1629 38 1 9.2043 -1.2660 1.6767 39 1 10.9149 -0.8757 1.3769 40 1 10.4681 -1.0903 3.8047 41 1 11.5802 -2.3633 3.2474 42 1 8.5689 -2.6780 3.6345 43 1 9.8258 -3.2961 4.7330 44 1 9.0270 -5.0721 3.1923 45 1 10.7423 -4.6936 2.9043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691791155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = -79.839863 kcal Electronic energy + Delta-G solvation = -21083.913755 eV Core-core repulsion = 18099.581053 eV Total energy + Delta-G solvation = -2984.332701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51439 -37.06938 -35.57290 -32.91453 -32.33732 -31.23886 -30.94611 -29.50104 -26.78408 -24.13061 -22.96359 -22.62602 -21.22492 -20.99410 -20.18514 -19.47644 -16.74004 -16.58801 -16.13998 -15.17939 -14.93838 -14.76992 -14.34981 -14.19989 -13.96428 -13.71607 -13.29266 -13.10523 -12.68474 -12.48229 -12.40646 -12.28500 -11.98659 -11.88202 -11.60512 -11.25320 -11.21423 -11.14190 -11.05800 -10.94606 -10.60603 -10.41125 -10.15910 -10.09546 -9.74836 -9.64334 -9.46879 -9.18152 -8.49539 -7.87559 -6.00596 -3.98635 3.36532 3.43008 3.49147 3.71337 4.36676 4.41876 4.50406 4.52323 4.62401 4.72766 4.86552 4.96785 5.11970 5.16129 5.28398 5.28982 5.34354 5.36817 5.43757 5.47268 5.52487 5.54357 5.60363 5.67225 5.74506 5.82333 5.85132 5.94535 6.03896 6.09357 6.12786 6.14055 6.21068 6.25228 6.34421 6.39602 6.83362 7.02372 7.18747 7.45074 7.65760 7.81896 7.98854 8.57512 9.03532 9.62142 11.12816 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.003968 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.135392 B = 7053.929756 C = 7769.425806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.693 5.693 12 C 0.067 3.933 13 C 0.078 3.922 14 H 0.076 0.924 15 C -0.149 4.149 16 C -0.147 4.147 17 C 0.107 3.893 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.107 4.107 23 O -0.356 6.356 24 H 0.263 0.737 25 H 0.013 0.987 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.342 0.658 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.747 -10.019 3.570 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.324 5.324 12 C -0.063 4.063 13 C 0.021 3.979 14 H 0.094 0.906 15 C -0.188 4.188 16 C -0.184 4.184 17 C 0.067 3.933 18 C -0.165 4.165 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.145 4.145 23 O -0.275 6.275 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.159 0.841 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.514 -9.710 3.045 26.542 hybrid contribution 0.243 0.456 0.689 0.861 sum 24.757 -9.255 3.734 26.692 Atomic orbital electron populations 1.69920 1.06322 1.26878 1.51299 1.25002 0.94727 0.99211 0.94490 0.86732 0.80331 0.83393 0.78562 1.20248 1.21517 1.18936 1.21084 0.89437 0.94501 1.50865 0.91143 1.19541 0.96588 0.91910 0.96722 1.21947 0.84169 1.00023 0.99356 1.60625 1.09762 1.12038 1.50012 1.21933 0.91556 0.92002 1.00788 1.23236 0.94623 0.93156 0.86914 0.90575 1.23134 0.95921 0.98063 1.01634 1.22988 0.97884 0.98159 0.99400 1.21893 0.83743 0.92315 0.95307 1.21946 0.98725 0.96070 0.99732 1.21462 1.02594 0.96846 0.94560 1.21515 0.98808 0.98718 0.96471 1.21484 1.00767 0.95164 0.98140 1.21623 1.01231 0.98221 0.93382 1.88957 1.25506 1.76662 1.36402 0.92767 0.96828 0.96133 0.91871 0.96059 0.84083 0.90212 0.94959 0.90310 0.90569 0.90658 0.90752 0.91587 0.91678 0.90812 0.92414 0.92158 0.92567 0.90920 0.92395 0.91483 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.76 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.63 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.07 1.54 5.62 -3.82 -0.02 1.52 16 11 N -0.69 -12.41 6.50 -113.78 -0.74 -13.15 16 12 C 0.07 0.97 5.44 -3.82 -0.02 0.95 16 13 C 0.08 0.97 3.48 -25.67 -0.09 0.88 16 14 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 15 C -0.15 -1.43 6.59 -24.69 -0.16 -1.59 16 16 C -0.15 -1.26 6.26 -25.28 -0.16 -1.41 16 17 C 0.11 1.08 0.71 -90.40 -0.06 1.02 16 18 C -0.13 -1.21 4.66 -26.82 -0.12 -1.33 16 19 C -0.12 -1.18 5.80 -26.71 -0.15 -1.33 16 20 C -0.12 -1.07 5.91 -26.73 -0.16 -1.23 16 21 C -0.12 -1.15 5.80 -26.71 -0.15 -1.31 16 22 C -0.11 -0.99 4.72 -26.83 -0.13 -1.12 16 23 O -0.36 -4.63 9.26 -35.23 -0.33 -4.95 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.01 0.34 7.20 -51.92 -0.37 -0.04 16 26 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.34 6.16 8.55 -39.29 -0.34 5.82 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.07 0.57 7.69 -51.93 -0.40 0.17 16 35 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.86 7.76 -51.93 -0.40 0.46 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -31.09 344.88 -10.18 -41.27 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.63 Total: 0.64 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.79 Total: -19.05 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.03 Total: -40.85 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.33 Total: -4.95 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.09 -10.18 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691791155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.575 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds