Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99851 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00207 * 3 2 1 5 5 H 1.48500 * 109.47350 * 30.00120 * 3 2 1 6 6 H 1.48502 * 109.47313 * 150.00201 * 3 2 1 7 7 C 1.37871 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00089 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47306 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99880 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46962 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.54674 * 307.86314 * 13 12 11 15 15 C 1.55002 * 110.61047 * 185.00203 * 13 12 11 16 16 C 1.54868 * 102.10300 * 204.44057 * 15 13 12 17 17 C 1.53886 * 104.21700 * 20.77901 * 16 15 13 18 18 C 1.52770 * 109.69550 * 242.62362 * 17 16 15 19 19 C 1.53049 * 109.46814 * 179.77615 * 18 17 16 20 20 C 1.52999 * 109.44403 * 59.55341 * 19 18 17 21 21 C 1.52997 * 109.53652 * 299.76063 * 20 19 18 22 22 C 1.52765 * 109.71962 * 121.47972 * 17 16 15 23 23 O 1.43844 * 107.37419 * 2.07810 * 17 16 15 24 24 H 0.96999 * 119.99884 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47084 * 60.00204 * 9 7 2 26 26 H 1.08998 * 109.47535 * 300.00248 * 9 7 2 27 27 H 1.08996 * 109.47334 * 60.00043 * 10 9 7 28 28 H 1.09000 * 109.47463 * 299.99720 * 10 9 7 29 29 H 1.00901 * 111.00012 * 56.05019 * 11 10 9 30 30 H 1.08992 * 109.47244 * 60.00421 * 12 11 10 31 31 H 1.09001 * 109.47283 * 300.00057 * 12 11 10 32 32 H 1.08995 * 110.90651 * 86.24019 * 15 13 12 33 33 H 1.09004 * 110.93904 * 322.65159 * 15 13 12 34 34 H 1.09002 * 110.50703 * 139.50228 * 16 15 13 35 35 H 1.09000 * 110.50419 * 262.05791 * 16 15 13 36 36 H 1.09004 * 109.47287 * 299.78136 * 18 17 16 37 37 H 1.09004 * 109.47004 * 59.78003 * 18 17 16 38 38 H 1.08997 * 109.47446 * 299.55919 * 19 18 17 39 39 H 1.09000 * 109.47707 * 179.54482 * 19 18 17 40 40 H 1.08994 * 109.45829 * 179.74424 * 20 19 18 41 41 H 1.08996 * 109.44994 * 59.77292 * 20 19 18 42 42 H 1.09000 * 109.48155 * 300.24646 * 21 20 19 43 43 H 1.09002 * 109.47705 * 180.23035 * 21 20 19 44 44 H 1.09009 * 109.47299 * 300.20394 * 22 17 16 45 45 H 1.08998 * 109.47019 * 60.20451 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4905 -2.6365 -0.0022 12 6 6.0169 -4.0080 -0.0027 13 6 7.5465 -3.9671 -0.0020 14 1 7.9125 -3.3302 -0.8073 15 6 8.1305 -5.3973 -0.1290 16 6 9.5310 -5.2341 0.5117 17 6 9.4038 -3.9712 1.3817 18 6 10.3610 -2.8956 0.8710 19 6 10.2262 -1.6404 1.7362 20 6 10.5596 -1.9851 3.1891 21 6 9.5901 -3.0543 3.6967 22 6 9.7233 -4.3128 2.8360 23 8 8.0454 -3.5105 1.2741 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1498 -0.8924 28 1 3.6586 -3.1510 0.8875 29 1 5.8521 -2.1111 0.7796 30 1 5.6676 -4.5309 -0.8929 31 1 5.6674 -4.5317 0.8870 32 1 8.2133 -5.6921 -1.1751 33 1 7.5288 -6.1148 0.4290 34 1 9.7720 -6.1000 1.1284 35 1 10.2891 -5.0924 -0.2586 36 1 11.3850 -3.2655 0.9241 37 1 10.1158 -2.6523 -0.1629 38 1 9.2043 -1.2660 1.6767 39 1 10.9149 -0.8757 1.3769 40 1 10.4681 -1.0903 3.8047 41 1 11.5802 -2.3633 3.2474 42 1 8.5689 -2.6780 3.6345 43 1 9.8258 -3.2961 4.7330 44 1 9.0270 -5.0721 3.1923 45 1 10.7423 -4.6936 2.9043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691791155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = -99.224113 kcal Electronic energy + Delta-G solvation = -21084.754319 eV Core-core repulsion = 18099.581053 eV Total energy + Delta-G solvation = -2985.173266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32644 -38.11304 -36.92343 -34.97260 -33.14388 -32.70879 -31.70986 -30.88324 -28.04837 -25.69148 -23.80282 -23.70096 -22.50338 -21.89734 -21.67265 -20.25769 -18.96824 -17.59377 -17.05322 -16.43887 -16.24720 -15.96716 -15.57309 -15.31461 -15.04046 -14.80487 -14.67302 -14.59243 -14.02237 -13.71648 -13.46483 -13.19796 -13.05684 -12.90782 -12.83363 -12.61697 -12.39915 -12.33679 -12.01852 -11.98151 -11.75344 -11.72961 -11.50056 -11.43946 -11.29759 -11.18545 -10.86660 -10.78560 -10.31604 -9.36809 -8.31700 -6.36359 1.35962 1.37181 1.50408 2.35497 2.87501 3.03723 3.23088 3.63139 3.75686 3.83021 3.97625 4.06785 4.12950 4.25188 4.31327 4.38561 4.43242 4.48270 4.51232 4.59903 4.64677 4.65612 4.70931 4.78077 4.87293 4.93337 4.95117 4.97028 4.98839 5.11758 5.15412 5.21822 5.27916 5.31792 5.32573 5.38689 5.46090 5.48265 5.59773 5.60742 6.09884 6.20403 6.23351 6.46786 6.71534 7.28695 8.85018 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.003968 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.135392 B = 7053.929756 C = 7769.425806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.535 4.535 8 H 0.033 0.967 9 C -0.004 4.004 10 C 0.086 3.914 11 N -0.692 5.692 12 C 0.067 3.933 13 C 0.080 3.920 14 H 0.070 0.930 15 C -0.144 4.144 16 C -0.141 4.141 17 C 0.098 3.902 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.106 4.106 23 O -0.380 6.380 24 H 0.268 0.732 25 H 0.015 0.985 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.013 0.987 29 H 0.341 0.659 30 H 0.088 0.912 31 H 0.027 0.973 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.864 -10.191 3.471 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.041 4.041 10 C -0.043 4.043 11 N -0.323 5.323 12 C -0.062 4.062 13 C 0.023 3.977 14 H 0.088 0.912 15 C -0.182 4.182 16 C -0.178 4.178 17 C 0.059 3.941 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.143 4.143 23 O -0.300 6.300 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.158 0.842 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.650 -9.905 2.945 29.517 hybrid contribution -0.775 0.445 0.744 1.163 sum 26.874 -9.459 3.689 28.728 Atomic orbital electron populations 1.70060 1.08229 1.28275 1.52443 1.25977 0.95628 1.03480 0.93891 0.85604 0.79274 0.78130 0.79289 1.19024 1.20691 1.17499 1.21399 0.91826 0.93313 1.50840 0.94889 1.19425 0.93666 0.94441 0.96603 1.21640 0.86351 0.97412 0.98869 1.60568 1.07419 1.14321 1.49958 1.22034 0.93377 0.89882 1.00928 1.23140 0.92807 0.95048 0.86740 0.91183 1.23111 0.96349 0.95916 1.02819 1.22994 0.97478 0.97762 0.99604 1.22131 0.82484 0.93229 0.96262 1.21949 0.99724 0.95558 0.99013 1.21451 1.00994 0.97531 0.95606 1.21502 0.99520 0.98532 0.95650 1.21472 0.99274 0.95752 0.99132 1.21653 1.02380 0.97644 0.92641 1.88948 1.27315 1.77259 1.36519 0.92353 0.96673 0.95963 0.92144 0.96904 0.84187 0.89342 0.95453 0.88734 0.90630 0.89242 0.89271 0.89412 0.92383 0.93772 0.91593 0.92321 0.90682 0.93862 0.91307 0.92070 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 2 C 0.01 0.44 5.47 84.65 0.46 0.90 16 3 Si 0.95 46.08 27.47 68.60 1.88 47.96 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 7 C -0.54 -32.21 9.66 25.60 0.25 -31.96 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 10 C 0.09 3.67 5.62 86.30 0.49 4.15 16 11 N -0.69 -24.54 6.50 -513.88 -3.34 -27.88 16 12 C 0.07 1.90 5.44 86.30 0.47 2.37 16 13 C 0.08 1.89 3.48 31.28 0.11 2.00 16 14 H 0.07 1.73 8.12 -2.39 -0.02 1.71 16 15 C -0.14 -2.42 6.59 31.92 0.21 -2.21 16 16 C -0.14 -1.99 6.26 31.53 0.20 -1.79 16 17 C 0.10 1.79 0.71 -10.65 -0.01 1.78 16 18 C -0.12 -2.10 4.66 30.53 0.14 -1.96 16 19 C -0.12 -2.25 5.80 30.61 0.18 -2.07 16 20 C -0.11 -1.90 5.91 30.59 0.18 -1.72 16 21 C -0.12 -2.18 5.80 30.61 0.18 -2.01 16 22 C -0.11 -1.73 4.72 30.53 0.14 -1.59 16 23 O -0.38 -9.64 9.26 -148.98 -1.38 -11.02 16 24 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 25 H 0.01 0.74 7.20 -2.38 -0.02 0.73 16 26 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.34 12.25 8.55 -89.69 -0.77 11.48 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.29 8.06 -2.38 -0.02 1.27 16 34 H 0.09 1.03 7.69 -2.39 -0.02 1.02 16 35 H 0.09 1.02 7.68 -2.39 -0.02 1.00 16 36 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.06 1.06 8.11 -2.38 -0.02 1.04 16 38 H 0.04 1.09 7.77 -2.39 -0.02 1.07 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 1.04 7.76 -2.39 -0.02 1.02 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.82 344.88 0.69 -67.13 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.10 Total: 18.59 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 3.12 Total: -34.15 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -3.04 Total: -88.51 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.38 Total: -11.02 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.88 Total: 47.96 kcal Total: -67.82 0.69 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691791155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.096 kcal (2) G-P(sol) polarization free energy of solvation -67.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds