Wall clock time and date at job start Mon Mar 30 2020 07:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46980 * 239.99891 * 3 2 1 5 5 H 1.48507 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47580 * 119.99713 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00026 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.27608 * 302.08396 * 9 7 2 11 11 C 1.54594 * 110.39252 * 64.23312 * 9 7 2 12 12 C 1.54933 * 102.92252 * 140.91703 * 11 9 7 13 13 N 1.48534 * 103.22824 * 322.58255 * 12 11 9 14 14 C 1.46901 * 111.00172 * 159.71827 * 13 12 11 15 15 C 1.53000 * 109.46769 * 52.60936 * 14 13 12 16 16 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 17 17 C 1.42901 * 113.99649 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46429 * 180.02562 * 17 16 15 19 19 C 1.54265 * 110.03503 * 292.91002 * 18 17 16 20 20 C 1.54961 * 104.15924 * 217.13898 * 19 18 17 21 21 C 1.54891 * 102.78160 * 37.88742 * 20 19 18 22 22 C 1.53875 * 110.02852 * 175.69335 * 18 17 16 23 23 C 1.47912 * 105.81750 * 39.20906 * 13 12 11 24 24 H 0.97004 * 119.99814 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.71950 * 259.27335 * 11 9 7 26 26 H 1.09000 * 110.72900 * 22.37975 * 11 9 7 27 27 H 1.08997 * 110.67236 * 204.14971 * 12 11 9 28 28 H 1.09001 * 110.67169 * 81.02116 * 12 11 9 29 29 H 1.09002 * 109.47401 * 292.60643 * 14 13 12 30 30 H 1.09001 * 109.46874 * 172.60656 * 14 13 12 31 31 H 1.09002 * 109.46642 * 184.99944 * 15 14 13 32 32 H 1.09002 * 109.47069 * 304.99474 * 15 14 13 33 33 H 1.08990 * 109.47463 * 299.99806 * 17 16 15 34 34 H 1.08992 * 109.47069 * 60.00902 * 17 16 15 35 35 H 1.09002 * 110.01904 * 54.30767 * 18 17 16 36 36 H 1.08999 * 110.48520 * 335.78210 * 19 18 17 37 37 H 1.09002 * 110.48695 * 98.43038 * 19 18 17 38 38 H 1.09000 * 110.72388 * 279.57415 * 20 19 18 39 39 H 1.09005 * 110.76973 * 156.21901 * 20 19 18 40 40 H 1.08998 * 110.49199 * 203.40281 * 21 20 19 41 41 H 1.09005 * 110.48487 * 80.75771 * 21 20 19 42 42 H 1.09004 * 110.03209 * 238.57137 * 22 18 17 43 43 H 1.08994 * 110.03692 * 0.02562 * 22 18 17 44 44 H 1.08997 * 109.91505 * 94.02357 * 23 13 12 45 45 H 1.08999 * 109.91449 * 215.12087 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5915 -2.5545 0.8666 11 6 0.4367 -2.6510 -1.3047 12 6 0.6011 -4.1540 -1.6428 13 7 2.0048 -4.4392 -1.2497 14 6 2.2109 -5.8787 -1.0410 15 6 1.7278 -6.6468 -2.2729 16 8 2.5431 -6.3071 -3.3962 17 6 2.1744 -6.9743 -4.6049 18 6 3.1098 -6.5375 -5.7341 19 6 2.8794 -5.0485 -6.0651 20 6 3.0388 -4.9734 -7.6047 21 6 2.3811 -6.2920 -8.0820 22 6 2.7935 -7.3279 -7.0159 23 6 2.2345 -3.6841 0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.6120 -2.4061 -1.1357 26 1 0.8545 -2.0271 -2.0949 27 1 0.4578 -4.3264 -2.7095 28 1 -0.0926 -4.7581 -1.0580 29 1 1.6475 -6.2034 -0.1662 30 1 3.2715 -6.0747 -0.8835 31 1 1.7981 -7.7180 -2.0836 32 1 0.6915 -6.3822 -2.4828 33 1 2.2543 -8.0521 -4.4639 34 1 1.1474 -6.7167 -4.8633 35 1 4.1476 -6.6990 -5.4425 36 1 1.8754 -4.7432 -5.7704 37 1 3.6280 -4.4279 -5.5726 38 1 4.0924 -4.9447 -7.8825 39 1 2.5086 -4.1099 -8.0065 40 1 2.7661 -6.5779 -9.0609 41 1 1.2965 -6.1879 -8.1132 42 1 3.6781 -7.8723 -7.3468 43 1 1.9734 -8.0223 -6.8337 44 1 2.0436 -4.3248 0.8620 45 1 3.2610 -3.3185 0.0309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693037260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:08 Heat of formation + Delta-G solvation = -64.715106 kcal Electronic energy + Delta-G solvation = -20938.959096 eV Core-core repulsion = 17955.282253 eV Total energy + Delta-G solvation = -2983.676843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.93639 -38.11210 -36.68769 -33.28466 -31.36962 -30.02553 -28.71801 -28.17134 -27.40392 -24.33508 -24.00813 -22.31435 -20.72717 -19.84795 -19.54721 -19.29642 -16.81488 -16.40756 -15.98744 -15.54315 -15.23986 -14.83900 -14.38168 -14.16011 -13.67211 -13.46735 -13.36861 -12.65406 -12.61423 -12.02377 -11.95250 -11.51184 -11.28632 -11.20625 -11.14575 -11.02562 -10.90368 -10.74598 -10.68655 -10.60014 -10.50524 -10.44363 -10.38248 -10.11475 -9.61577 -9.37661 -9.19268 -8.72540 -8.33283 -7.57512 -5.95031 -3.96304 3.37857 3.41620 3.45292 3.77665 4.50293 4.54577 4.56862 4.70224 4.74842 5.14053 5.19870 5.34582 5.38622 5.40067 5.42154 5.44177 5.52644 5.57360 5.59095 5.70383 5.70927 5.79798 5.84535 5.95474 5.97169 6.03957 6.05930 6.19564 6.21007 6.32668 6.35696 6.36945 6.43036 6.65779 6.94951 7.20206 7.28350 7.41194 7.54525 7.71982 7.90630 7.97695 8.10353 8.51704 9.04848 9.66642 11.15160 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.004174 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.511636 B = 6705.873690 C = 7596.317358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.091 4.091 12 C 0.030 3.970 13 N -0.504 5.504 14 C 0.048 3.952 15 C 0.066 3.934 16 O -0.365 6.365 17 C 0.068 3.932 18 C -0.090 4.090 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.118 4.118 23 C 0.043 3.957 24 H 0.259 0.741 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -15.309 -11.686 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.097 4.097 13 N -0.228 5.228 14 C -0.081 4.081 15 C -0.011 4.011 16 O -0.284 6.284 17 C -0.009 4.009 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.084 4.084 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.071 -14.910 -12.070 19.427 hybrid contribution -0.404 0.343 0.688 0.868 sum 2.666 -14.567 -11.382 18.678 Atomic orbital electron populations 1.69961 1.05891 1.26477 1.50831 1.24974 0.94839 0.99009 0.95238 0.86682 0.79595 0.83237 0.78619 1.20233 1.21443 1.20362 1.21156 0.92724 0.90211 1.50336 0.92527 1.19476 0.92466 0.91950 0.93934 0.95346 1.22384 1.00049 0.90655 0.99847 1.23326 0.88364 0.99195 0.98842 1.64795 1.22996 1.04602 1.30456 1.22286 1.01556 0.90246 0.94025 1.22582 0.94522 0.96964 0.87024 1.88047 1.55986 1.67620 1.16715 1.22597 0.97636 0.95116 0.85581 1.21734 0.99886 0.96061 0.93135 1.22355 1.02702 0.95245 0.94673 1.22554 1.00480 0.97230 0.96303 1.22360 1.00502 0.95374 0.97982 1.22136 1.01124 0.97825 0.94467 1.23124 1.01872 0.95516 0.87862 0.93123 0.92496 0.92006 0.91940 0.95731 0.94089 0.90534 0.93949 0.93296 0.94248 0.93718 0.90403 0.91311 0.90999 0.91709 0.91630 0.91942 0.91721 0.91681 0.91885 0.96420 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 12.63 55.43 0.70 -25.32 16 2 C 0.06 1.71 5.34 -17.82 -0.10 1.62 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.22 8.38 -34.44 -0.29 -14.51 16 8 H 0.06 1.58 7.35 -52.48 -0.39 1.19 16 9 C 0.04 1.04 2.86 -90.42 -0.26 0.78 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.19 5.75 -24.87 -0.14 -2.33 16 12 C 0.03 0.61 5.09 -1.90 -0.01 0.60 16 13 N -0.50 -10.15 5.34 -230.44 -1.23 -11.38 16 14 C 0.05 0.77 5.41 -3.82 -0.02 0.75 16 15 C 0.07 0.94 5.76 37.16 0.21 1.15 16 16 O -0.36 -5.64 10.13 -35.23 -0.36 -5.99 16 17 C 0.07 0.82 4.98 37.16 0.19 1.00 16 18 C -0.09 -1.00 3.19 -89.50 -0.29 -1.29 16 19 C -0.11 -1.38 6.22 -25.03 -0.16 -1.53 16 20 C -0.13 -1.29 6.91 -24.70 -0.17 -1.46 16 21 C -0.12 -1.09 6.83 -25.07 -0.17 -1.27 16 22 C -0.12 -1.05 6.46 -25.61 -0.17 -1.22 16 23 C 0.04 0.96 6.34 -2.75 -0.02 0.94 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16 26 H 0.06 1.62 7.86 -51.93 -0.41 1.21 16 27 H 0.06 1.19 7.56 -51.93 -0.39 0.80 16 28 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 29 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 33 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.53 8.02 -51.93 -0.42 0.11 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 44 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 45 H 0.07 1.60 7.40 -51.93 -0.38 1.22 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -29.44 348.01 -10.60 -40.04 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.55 Total: -2.55 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.38 Total: -16.75 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.53 Total: -36.70 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.36 Total: -5.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.44 -10.60 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693037260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.673 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds