Wall clock time and date at job start Mon Mar 30 2020 07:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46980 * 239.99891 * 3 2 1 5 5 H 1.48507 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47580 * 119.99713 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00026 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.27608 * 302.08396 * 9 7 2 11 11 C 1.54594 * 110.39252 * 64.23312 * 9 7 2 12 12 C 1.54933 * 102.92252 * 140.91703 * 11 9 7 13 13 N 1.48534 * 103.22824 * 322.58255 * 12 11 9 14 14 C 1.46901 * 111.00172 * 159.71827 * 13 12 11 15 15 C 1.53000 * 109.46769 * 52.60936 * 14 13 12 16 16 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 17 17 C 1.42901 * 113.99649 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46429 * 180.02562 * 17 16 15 19 19 C 1.54265 * 110.03503 * 292.91002 * 18 17 16 20 20 C 1.54961 * 104.15924 * 217.13898 * 19 18 17 21 21 C 1.54891 * 102.78160 * 37.88742 * 20 19 18 22 22 C 1.53875 * 110.02852 * 175.69335 * 18 17 16 23 23 C 1.47912 * 105.81750 * 39.20906 * 13 12 11 24 24 H 0.97004 * 119.99814 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.71950 * 259.27335 * 11 9 7 26 26 H 1.09000 * 110.72900 * 22.37975 * 11 9 7 27 27 H 1.08997 * 110.67236 * 204.14971 * 12 11 9 28 28 H 1.09001 * 110.67169 * 81.02116 * 12 11 9 29 29 H 1.09002 * 109.47401 * 292.60643 * 14 13 12 30 30 H 1.09001 * 109.46874 * 172.60656 * 14 13 12 31 31 H 1.09002 * 109.46642 * 184.99944 * 15 14 13 32 32 H 1.09002 * 109.47069 * 304.99474 * 15 14 13 33 33 H 1.08990 * 109.47463 * 299.99806 * 17 16 15 34 34 H 1.08992 * 109.47069 * 60.00902 * 17 16 15 35 35 H 1.09002 * 110.01904 * 54.30767 * 18 17 16 36 36 H 1.08999 * 110.48520 * 335.78210 * 19 18 17 37 37 H 1.09002 * 110.48695 * 98.43038 * 19 18 17 38 38 H 1.09000 * 110.72388 * 279.57415 * 20 19 18 39 39 H 1.09005 * 110.76973 * 156.21901 * 20 19 18 40 40 H 1.08998 * 110.49199 * 203.40281 * 21 20 19 41 41 H 1.09005 * 110.48487 * 80.75771 * 21 20 19 42 42 H 1.09004 * 110.03209 * 238.57137 * 22 18 17 43 43 H 1.08994 * 110.03692 * 0.02562 * 22 18 17 44 44 H 1.08997 * 109.91505 * 94.02357 * 23 13 12 45 45 H 1.08999 * 109.91449 * 215.12087 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5915 -2.5545 0.8666 11 6 0.4367 -2.6510 -1.3047 12 6 0.6011 -4.1540 -1.6428 13 7 2.0048 -4.4392 -1.2497 14 6 2.2109 -5.8787 -1.0410 15 6 1.7278 -6.6468 -2.2729 16 8 2.5431 -6.3071 -3.3962 17 6 2.1744 -6.9743 -4.6049 18 6 3.1098 -6.5375 -5.7341 19 6 2.8794 -5.0485 -6.0651 20 6 3.0388 -4.9734 -7.6047 21 6 2.3811 -6.2920 -8.0820 22 6 2.7935 -7.3279 -7.0159 23 6 2.2345 -3.6841 0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.6120 -2.4061 -1.1357 26 1 0.8545 -2.0271 -2.0949 27 1 0.4578 -4.3264 -2.7095 28 1 -0.0926 -4.7581 -1.0580 29 1 1.6475 -6.2034 -0.1662 30 1 3.2715 -6.0747 -0.8835 31 1 1.7981 -7.7180 -2.0836 32 1 0.6915 -6.3822 -2.4828 33 1 2.2543 -8.0521 -4.4639 34 1 1.1474 -6.7167 -4.8633 35 1 4.1476 -6.6990 -5.4425 36 1 1.8754 -4.7432 -5.7704 37 1 3.6280 -4.4279 -5.5726 38 1 4.0924 -4.9447 -7.8825 39 1 2.5086 -4.1099 -8.0065 40 1 2.7661 -6.5779 -9.0609 41 1 1.2965 -6.1879 -8.1132 42 1 3.6781 -7.8723 -7.3468 43 1 1.9734 -8.0223 -6.8337 44 1 2.0436 -4.3248 0.8620 45 1 3.2610 -3.3185 0.0309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693037260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:07 Heat of formation + Delta-G solvation = -81.937472 kcal Electronic energy + Delta-G solvation = -20939.705913 eV Core-core repulsion = 17955.282253 eV Total energy + Delta-G solvation = -2984.423661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12146 -39.42407 -37.82125 -35.19222 -33.01641 -31.10987 -29.99554 -29.54730 -28.87249 -26.12163 -25.13825 -23.74136 -21.54878 -21.30594 -21.26500 -20.45506 -18.58039 -17.78951 -17.19170 -16.69618 -16.42795 -16.27277 -16.02690 -15.61157 -14.92868 -14.69299 -14.41489 -14.18618 -14.07076 -13.50897 -13.41000 -13.05292 -12.84478 -12.63185 -12.60426 -12.36072 -12.13154 -11.99914 -11.95461 -11.87119 -11.77233 -11.62353 -11.53282 -11.41067 -11.27539 -11.14721 -10.84147 -10.50764 -10.38286 -9.15037 -8.12524 -6.20887 1.41351 1.43582 1.50865 2.44269 2.77970 3.16983 3.24577 3.72915 3.77198 3.86275 4.03552 4.12510 4.31679 4.36490 4.39035 4.40835 4.48485 4.51570 4.54100 4.59019 4.60745 4.68978 4.75248 4.81114 4.88291 4.90115 4.92594 4.96741 5.05370 5.09690 5.13163 5.24441 5.26997 5.36764 5.40059 5.49532 5.52064 5.55778 5.72917 5.84849 6.19373 6.28009 6.38921 6.49962 6.86843 7.45497 8.96991 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.004174 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.511636 B = 6705.873690 C = 7596.317358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.032 3.968 10 H 0.002 0.998 11 C -0.084 4.084 12 C 0.048 3.952 13 N -0.519 5.519 14 C 0.045 3.955 15 C 0.068 3.932 16 O -0.394 6.394 17 C 0.065 3.935 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.112 4.112 23 C 0.055 3.945 24 H 0.260 0.740 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -17.046 -12.644 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.013 3.987 10 H 0.020 0.980 11 C -0.122 4.122 12 C -0.079 4.079 13 N -0.243 5.243 14 C -0.083 4.083 15 C -0.009 4.009 16 O -0.314 6.314 17 C -0.011 4.011 18 C -0.108 4.108 19 C -0.155 4.155 20 C -0.164 4.164 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.073 4.073 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.538 -16.665 -13.028 21.447 hybrid contribution -0.543 0.873 0.999 1.434 sum 2.995 -15.792 -12.030 20.076 Atomic orbital electron populations 1.70077 1.07186 1.27284 1.51417 1.25746 0.95701 1.02384 0.94824 0.85673 0.78435 0.79102 0.78826 1.19926 1.20823 1.19447 1.21498 0.92776 0.91786 1.50518 0.93027 1.19462 0.92971 0.92838 0.93419 0.97987 1.22149 0.98385 0.93455 0.98251 1.23135 0.88953 0.96054 0.99799 1.64727 1.22852 1.07302 1.29453 1.22404 1.02218 0.87708 0.95950 1.22587 0.94056 0.98312 0.85899 1.88013 1.56659 1.68751 1.17937 1.22756 0.97745 0.96059 0.84566 1.21759 0.99411 0.95418 0.94203 1.22334 1.00800 0.95983 0.96337 1.22551 1.01084 0.98291 0.94491 1.22364 1.00505 0.94298 0.98746 1.22121 1.02153 0.97703 0.92999 1.22863 1.00009 0.94770 0.89654 0.93074 0.94173 0.94917 0.90804 0.93898 0.92484 0.90236 0.90797 0.93330 0.92149 0.93644 0.91107 0.92998 0.93447 0.91154 0.91702 0.90247 0.91636 0.90396 0.90732 0.94654 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.82 12.63 21.45 0.27 -54.55 16 2 C 0.01 0.69 5.34 84.66 0.45 1.14 16 3 Si 0.95 45.09 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.53 -30.37 8.38 25.60 0.21 -30.15 16 8 H 0.05 2.94 7.35 -2.91 -0.02 2.92 16 9 C 0.03 1.68 2.86 -10.66 -0.03 1.65 16 10 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 11 C -0.08 -4.14 5.75 31.80 0.18 -3.96 16 12 C 0.05 1.89 5.09 86.65 0.44 2.33 16 13 N -0.52 -20.44 5.34 -882.99 -4.72 -25.16 16 14 C 0.05 1.37 5.41 86.30 0.47 1.83 16 15 C 0.07 1.75 5.76 71.98 0.41 2.17 16 16 O -0.39 -11.54 10.13 -148.98 -1.51 -13.05 16 17 C 0.07 1.45 4.98 71.98 0.36 1.80 16 18 C -0.09 -1.89 3.19 -10.07 -0.03 -1.92 16 19 C -0.12 -2.88 6.22 31.69 0.20 -2.69 16 20 C -0.13 -2.43 6.91 31.91 0.22 -2.21 16 21 C -0.12 -1.86 6.83 31.67 0.22 -1.65 16 22 C -0.11 -1.71 6.46 31.32 0.20 -1.51 16 23 C 0.05 2.40 6.34 86.44 0.55 2.95 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.04 2.06 8.12 -2.39 -0.02 2.04 16 26 H 0.03 1.76 7.86 -2.39 -0.02 1.74 16 27 H 0.07 2.74 7.56 -2.39 -0.02 2.72 16 28 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 29 H 0.06 1.57 7.81 -2.39 -0.02 1.55 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.25 6.52 -2.39 -0.02 1.23 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.00 8.02 -2.39 -0.02 0.98 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.42 7.77 -2.39 -0.02 1.40 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 44 H 0.04 1.41 7.57 -2.39 -0.02 1.39 16 45 H 0.06 2.70 7.40 -2.39 -0.02 2.68 16 Total: -1.00 -64.21 348.01 0.84 -63.38 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.91 Total: 12.46 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.85 Total: -30.19 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -4.45 Total: -79.71 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.51 Total: -13.05 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.21 0.84 -63.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693037260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.560 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds