Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47172 * 2 1 4 4 C 1.53004 * 109.47086 * 119.99313 * 2 1 3 5 5 C 1.50698 * 109.47047 * 184.99919 * 4 2 1 6 6 H 1.07999 * 119.99929 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99995 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99486 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 90.00025 * 9 7 5 11 11 H 1.48496 * 109.47077 * 210.00295 * 9 7 5 12 12 H 1.48507 * 109.46816 * 330.00203 * 9 7 5 13 13 N 1.46900 * 109.47432 * 239.99486 * 2 1 3 14 14 C 1.46902 * 110.99699 * 88.68446 * 13 2 1 15 15 C 1.50698 * 112.82487 * 289.73580 * 14 13 2 16 16 O 1.20827 * 120.00286 * 142.44188 * 15 14 13 17 17 O 1.34227 * 120.00123 * 322.44615 * 15 14 13 18 18 C 1.53949 * 113.57579 * 158.54861 * 14 13 2 19 19 C 1.52906 * 86.78343 * 270.12630 * 18 14 13 20 20 C 1.52906 * 121.13345 * 100.82012 * 19 18 14 21 21 C 1.53952 * 86.78468 * 100.82381 * 20 19 18 22 22 C 1.52909 * 121.13760 * 209.38039 * 19 18 14 23 23 C 1.52909 * 88.04311 * 335.10298 * 19 18 14 24 24 H 1.08997 * 109.47005 * 52.82582 * 1 2 3 25 25 H 1.09005 * 109.46873 * 172.82269 * 1 2 3 26 26 H 1.08990 * 109.47296 * 292.82315 * 1 2 3 27 27 H 1.08995 * 109.47155 * 305.00451 * 4 2 1 28 28 H 1.09000 * 109.46653 * 65.00408 * 4 2 1 29 29 H 0.97006 * 119.99547 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00330 * 212.64073 * 13 2 1 31 31 H 0.96704 * 116.99977 * 179.97438 * 17 15 14 32 32 H 1.08998 * 113.66571 * 24.60304 * 18 14 13 33 33 H 1.09006 * 113.66201 * 155.65916 * 18 14 13 34 34 H 1.09001 * 113.66686 * 215.29309 * 20 19 18 35 35 H 1.09000 * 113.66496 * 346.35381 * 20 19 18 36 36 H 1.09006 * 113.57816 * 270.13098 * 21 20 19 37 37 H 1.08997 * 113.65530 * 139.34817 * 21 20 19 38 38 H 1.09000 * 113.66537 * 13.65709 * 22 19 18 39 39 H 1.08998 * 113.65973 * 144.71207 * 22 19 18 40 40 H 1.09002 * 113.66153 * 270.42481 * 23 19 18 41 41 H 1.09006 * 113.66230 * 139.36577 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1933 2.3580 8 7 3.5765 -1.8383 3.2992 9 14 6.0921 -1.0609 2.4370 10 1 6.4698 0.1612 3.1912 11 1 6.6446 -2.2565 3.1230 12 1 6.6416 -0.9823 1.0596 13 7 2.0198 -0.6926 -1.1993 14 6 2.1656 0.2413 -2.3239 15 6 0.8417 0.7204 -2.8613 16 8 0.7184 1.8635 -3.2329 17 8 -0.2006 -0.1227 -2.9272 18 6 3.1320 -0.2546 -3.4148 19 6 4.2398 0.4535 -2.6342 20 6 5.1879 -0.3270 -1.7232 21 6 6.2169 -0.2408 -2.8651 22 6 5.4709 1.0177 -3.3443 23 6 3.1685 1.3778 -2.0545 24 1 -0.3633 0.6209 -0.8188 25 1 -0.3633 -1.0197 -0.1284 26 1 -0.3633 0.3986 0.9471 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2057 29 1 4.0609 -2.2450 4.0347 30 1 2.8882 -1.1708 -1.0115 31 1 -1.0294 0.2304 -3.2788 32 1 3.2409 -1.3387 -3.4429 33 1 2.9429 0.1792 -4.3968 34 1 5.4822 0.2194 -0.8270 35 1 4.8537 -1.3426 -1.5111 36 1 6.1613 -1.0740 -3.5658 37 1 7.2329 -0.0422 -2.5242 38 1 5.3627 1.0764 -4.4274 39 1 5.8447 1.9420 -2.9039 40 1 2.9897 2.2704 -2.6541 41 1 3.3066 1.5976 -0.9958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694247170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = -57.582650 kcal Electronic energy + Delta-G solvation = -22141.533305 eV Core-core repulsion = 19022.332654 eV Total energy + Delta-G solvation = -3119.200651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21815 -39.27902 -36.44026 -35.86974 -34.09576 -32.27877 -28.85288 -27.47879 -25.95322 -25.49525 -25.26238 -23.03442 -22.34158 -19.83240 -19.25145 -17.77207 -17.70201 -16.57764 -16.27622 -15.83295 -15.21515 -15.00132 -14.60938 -14.20368 -13.62526 -13.54646 -13.15296 -12.64928 -12.53696 -12.09160 -12.00908 -11.87907 -11.62425 -11.34147 -11.18712 -11.08826 -10.98588 -10.81429 -10.60705 -10.55851 -10.46069 -10.30385 -9.99857 -9.92573 -9.59807 -9.19119 -9.07376 -8.42482 -7.81373 -6.05261 -4.08351 2.42064 3.26459 3.34140 3.34594 3.35678 4.38836 4.39916 4.53500 4.60665 4.72602 4.95045 5.03803 5.13012 5.32973 5.58127 5.61504 5.74890 5.80806 5.87190 5.91962 6.00014 6.02356 6.07674 6.17197 6.19474 6.24410 6.37697 6.46124 6.51742 6.60298 6.67820 6.71719 6.88663 6.94104 7.39572 7.61802 7.88760 7.95756 8.12869 8.23590 8.33470 8.98193 9.55949 11.05748 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.008732 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.435645 B = 3205.881367 C = 4585.923014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.080 3.920 3 H 0.038 0.962 4 C 0.020 3.980 5 C -0.527 4.527 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.644 5.644 14 C 0.102 3.898 15 C 0.509 3.491 16 O -0.530 6.530 17 O -0.494 6.494 18 C -0.097 4.097 19 C -0.103 4.103 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.122 4.122 23 C -0.143 4.143 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.023 0.977 28 H 0.026 0.974 29 H 0.260 0.740 30 H 0.367 0.633 31 H 0.395 0.605 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 3.132 -12.984 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.709 3.291 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.281 5.281 14 C 0.007 3.993 15 C 0.352 3.648 16 O -0.419 6.419 17 O -0.303 6.303 18 C -0.134 4.134 19 C -0.103 4.103 20 C -0.151 4.151 21 C -0.179 4.179 22 C -0.160 4.160 23 C -0.183 4.183 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.192 0.808 31 H 0.252 0.748 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.626 2.930 -12.936 13.278 hybrid contribution 1.163 0.821 0.282 1.451 sum 0.536 3.751 -12.653 13.209 Atomic orbital electron populations 1.21855 0.96533 1.01549 0.99334 1.21771 0.93575 0.96600 0.90923 0.94358 1.19306 0.95695 0.96183 0.90554 1.21309 0.92016 1.34544 1.08647 0.92023 1.24964 0.97954 0.95215 0.95756 1.69963 1.35447 1.35510 1.11928 0.86767 0.86295 0.77535 0.78493 1.20885 1.21331 1.19279 1.60579 1.36976 1.26021 1.04557 1.21858 0.86415 0.95414 0.95565 1.23293 0.85555 0.82651 0.73320 1.90660 1.84070 1.20213 1.46916 1.84763 1.22179 1.45968 1.77365 1.22791 0.92756 1.01520 0.96354 1.22342 0.92456 0.97622 0.97887 1.22809 0.94622 1.01034 0.96619 1.22844 0.98325 0.97990 0.98742 1.22698 0.95804 0.97893 0.99575 1.23535 0.94193 0.97350 1.03176 0.94932 0.92105 0.93311 0.95920 0.95536 0.92990 0.80792 0.74817 0.89479 0.89331 0.88899 0.90394 0.90436 0.91757 0.91716 0.90026 0.88857 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.67 37.16 0.32 -2.15 16 2 C 0.08 1.63 2.32 -67.71 -0.16 1.47 16 3 H 0.04 0.81 5.92 -51.93 -0.31 0.50 16 4 C 0.02 0.49 4.54 -27.88 -0.13 0.36 16 5 C -0.53 -13.45 8.10 -34.44 -0.28 -13.73 16 6 H 0.06 1.47 5.25 -52.49 -0.28 1.19 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 9 Si 0.88 20.41 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 N -0.64 -11.91 6.19 -93.21 -0.58 -12.49 16 14 C 0.10 1.65 1.10 -131.77 -0.14 1.51 16 15 C 0.51 8.27 5.74 36.00 0.21 8.48 16 16 O -0.53 -9.49 16.65 -18.75 -0.31 -9.80 16 17 O -0.49 -6.93 11.68 -39.25 -0.46 -7.39 16 18 C -0.10 -1.33 7.04 -26.29 -0.19 -1.52 16 19 C -0.10 -1.47 0.99 -154.72 -0.15 -1.62 16 20 C -0.11 -1.77 6.01 -26.28 -0.16 -1.93 16 21 C -0.14 -1.80 8.08 -25.75 -0.21 -2.00 16 22 C -0.12 -1.51 7.84 -26.28 -0.21 -1.72 16 23 C -0.14 -2.31 6.52 -26.28 -0.17 -2.48 16 24 H 0.03 0.55 5.45 -51.93 -0.28 0.27 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.37 7.17 5.00 -39.29 -0.20 6.97 16 31 H 0.40 3.67 9.10 45.56 0.41 4.08 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 34 H 0.09 1.63 7.04 -51.93 -0.37 1.27 16 35 H 0.08 1.29 7.21 -51.93 -0.37 0.91 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.48 7.34 -51.93 -0.38 1.10 16 41 H 0.09 1.60 6.49 -51.93 -0.34 1.26 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -29.36 319.56 -7.64 -36.99 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.47 Total: 11.08 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.36 Total: -13.73 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.16 Total: -37.35 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.77 Total: -17.19 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.36 -7.64 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694247170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.588 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds