Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47172 * 2 1 4 4 C 1.53004 * 109.47086 * 119.99313 * 2 1 3 5 5 C 1.50698 * 109.47047 * 184.99919 * 4 2 1 6 6 H 1.07999 * 119.99929 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99995 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99486 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 90.00025 * 9 7 5 11 11 H 1.48496 * 109.47077 * 210.00295 * 9 7 5 12 12 H 1.48507 * 109.46816 * 330.00203 * 9 7 5 13 13 N 1.46900 * 109.47432 * 239.99486 * 2 1 3 14 14 C 1.46902 * 110.99699 * 88.68446 * 13 2 1 15 15 C 1.50698 * 112.82487 * 289.73580 * 14 13 2 16 16 O 1.20827 * 120.00286 * 142.44188 * 15 14 13 17 17 O 1.34227 * 120.00123 * 322.44615 * 15 14 13 18 18 C 1.53949 * 113.57579 * 158.54861 * 14 13 2 19 19 C 1.52906 * 86.78343 * 270.12630 * 18 14 13 20 20 C 1.52906 * 121.13345 * 100.82012 * 19 18 14 21 21 C 1.53952 * 86.78468 * 100.82381 * 20 19 18 22 22 C 1.52909 * 121.13760 * 209.38039 * 19 18 14 23 23 C 1.52909 * 88.04311 * 335.10298 * 19 18 14 24 24 H 1.08997 * 109.47005 * 52.82582 * 1 2 3 25 25 H 1.09005 * 109.46873 * 172.82269 * 1 2 3 26 26 H 1.08990 * 109.47296 * 292.82315 * 1 2 3 27 27 H 1.08995 * 109.47155 * 305.00451 * 4 2 1 28 28 H 1.09000 * 109.46653 * 65.00408 * 4 2 1 29 29 H 0.97006 * 119.99547 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00330 * 212.64073 * 13 2 1 31 31 H 0.96704 * 116.99977 * 179.97438 * 17 15 14 32 32 H 1.08998 * 113.66571 * 24.60304 * 18 14 13 33 33 H 1.09006 * 113.66201 * 155.65916 * 18 14 13 34 34 H 1.09001 * 113.66686 * 215.29309 * 20 19 18 35 35 H 1.09000 * 113.66496 * 346.35381 * 20 19 18 36 36 H 1.09006 * 113.57816 * 270.13098 * 21 20 19 37 37 H 1.08997 * 113.65530 * 139.34817 * 21 20 19 38 38 H 1.09000 * 113.66537 * 13.65709 * 22 19 18 39 39 H 1.08998 * 113.65973 * 144.71207 * 22 19 18 40 40 H 1.09002 * 113.66153 * 270.42481 * 23 19 18 41 41 H 1.09006 * 113.66230 * 139.36577 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1933 2.3580 8 7 3.5765 -1.8383 3.2992 9 14 6.0921 -1.0609 2.4370 10 1 6.4698 0.1612 3.1912 11 1 6.6446 -2.2565 3.1230 12 1 6.6416 -0.9823 1.0596 13 7 2.0198 -0.6926 -1.1993 14 6 2.1656 0.2413 -2.3239 15 6 0.8417 0.7204 -2.8613 16 8 0.7184 1.8635 -3.2329 17 8 -0.2006 -0.1227 -2.9272 18 6 3.1320 -0.2546 -3.4148 19 6 4.2398 0.4535 -2.6342 20 6 5.1879 -0.3270 -1.7232 21 6 6.2169 -0.2408 -2.8651 22 6 5.4709 1.0177 -3.3443 23 6 3.1685 1.3778 -2.0545 24 1 -0.3633 0.6209 -0.8188 25 1 -0.3633 -1.0197 -0.1284 26 1 -0.3633 0.3986 0.9471 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2057 29 1 4.0609 -2.2450 4.0347 30 1 2.8882 -1.1708 -1.0115 31 1 -1.0294 0.2304 -3.2788 32 1 3.2409 -1.3387 -3.4429 33 1 2.9429 0.1792 -4.3968 34 1 5.4822 0.2194 -0.8270 35 1 4.8537 -1.3426 -1.5111 36 1 6.1613 -1.0740 -3.5658 37 1 7.2329 -0.0422 -2.5242 38 1 5.3627 1.0764 -4.4274 39 1 5.8447 1.9420 -2.9039 40 1 2.9897 2.2704 -2.6541 41 1 3.3066 1.5976 -0.9958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694247170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = -76.243585 kcal Electronic energy + Delta-G solvation = -22142.342504 eV Core-core repulsion = 19022.332654 eV Total energy + Delta-G solvation = -3120.009850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.45408 -40.47838 -37.91548 -37.07812 -35.62159 -34.15965 -30.38933 -29.31615 -27.18081 -26.63064 -26.52703 -24.93525 -23.45641 -21.41440 -20.55855 -19.04631 -18.93602 -18.35733 -17.77864 -17.20387 -16.49389 -16.29579 -16.23096 -15.66676 -14.96918 -14.79562 -14.76574 -14.05390 -13.84614 -13.60053 -13.42134 -13.24116 -13.20388 -13.06430 -12.62789 -12.50850 -12.43897 -12.35989 -12.14862 -11.95834 -11.90172 -11.73620 -11.29743 -11.09407 -10.99994 -10.98636 -10.73090 -10.51914 -9.32303 -8.14162 -6.22739 1.15666 1.41047 1.42662 1.51954 2.21061 2.43250 2.99976 3.23405 3.37992 3.43512 3.55396 3.83116 3.89962 4.00889 4.23423 4.44480 4.53471 4.57850 4.61896 4.66225 4.71084 4.84739 4.86634 4.92332 4.97285 5.02654 5.05942 5.13957 5.17348 5.23191 5.34338 5.46719 5.50509 5.54646 5.60315 5.63192 5.87813 6.22582 6.27700 6.53108 6.92670 7.10053 7.45790 8.97823 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.008732 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.435645 B = 3205.881367 C = 4585.923014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.091 3.909 3 H 0.030 0.970 4 C 0.027 3.973 5 C -0.526 4.526 6 H 0.077 0.923 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.943 3.057 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.246 1.246 13 N -0.643 5.643 14 C 0.089 3.911 15 C 0.513 3.487 16 O -0.548 6.548 17 O -0.493 6.493 18 C -0.083 4.083 19 C -0.100 4.100 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.144 4.144 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.048 0.952 27 H -0.007 1.007 28 H 0.000 1.000 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.417 0.583 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 3.539 -15.493 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.018 4.018 3 H 0.048 0.952 4 C -0.010 4.010 5 C -0.564 4.564 6 H 0.095 0.905 7 C -0.190 4.190 8 N -0.573 5.573 9 Si 0.769 3.231 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.169 1.169 13 N -0.278 5.278 14 C -0.004 4.004 15 C 0.356 3.644 16 O -0.439 6.439 17 O -0.305 6.305 18 C -0.121 4.121 19 C -0.100 4.100 20 C -0.165 4.165 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.183 4.183 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.011 0.989 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.184 0.816 31 H 0.278 0.722 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.276 3.345 -15.476 15.836 hybrid contribution 0.778 0.695 1.079 1.501 sum 1.054 4.039 -14.397 14.990 Atomic orbital electron populations 1.21771 0.94889 1.01830 1.00021 1.21520 0.94838 0.95445 0.90040 0.95241 1.19155 0.95532 0.94711 0.91608 1.21690 0.92660 1.33517 1.08541 0.90531 1.25793 1.02575 0.95077 0.95554 1.70106 1.37292 1.37066 1.12815 0.85768 0.80906 0.77022 0.79426 1.20950 1.21666 1.16947 1.60549 1.36610 1.26417 1.04272 1.22025 0.87430 0.95344 0.95642 1.23152 0.85857 0.82386 0.72978 1.90659 1.84402 1.20883 1.47943 1.84705 1.22965 1.45648 1.77137 1.22794 0.90942 1.02042 0.96286 1.22335 0.92803 0.97044 0.97797 1.22792 0.96787 0.99935 0.96971 1.22833 0.97792 0.98750 0.97417 1.22677 0.93923 0.97690 1.00700 1.23485 0.95314 0.97800 1.01691 0.93326 0.92189 0.93322 0.98861 0.98169 0.93177 0.81602 0.72245 0.88785 0.87208 0.91382 0.91874 0.88758 0.91163 0.89521 0.89902 0.88446 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.67 71.98 0.62 -4.01 16 2 C 0.09 3.73 2.32 44.92 0.10 3.84 16 3 H 0.03 1.27 5.92 -2.39 -0.01 1.26 16 4 C 0.03 1.39 4.54 29.85 0.14 1.52 16 5 C -0.53 -27.42 8.10 25.60 0.21 -27.21 16 6 H 0.08 3.70 5.25 -2.91 -0.02 3.68 16 7 C 0.01 0.43 5.46 84.66 0.46 0.90 16 8 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 9 Si 0.94 42.26 29.54 68.60 2.03 44.29 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 13 N -0.64 -23.49 6.19 -448.82 -2.78 -26.26 16 14 C 0.09 2.77 1.10 3.42 0.00 2.78 16 15 C 0.51 15.60 5.74 71.24 0.41 16.01 16 16 O -0.55 -18.52 16.65 21.96 0.37 -18.16 16 17 O -0.49 -12.62 11.68 -51.39 -0.60 -13.22 16 18 C -0.08 -2.07 7.04 30.88 0.22 -1.85 16 19 C -0.10 -2.64 0.99 -52.32 -0.05 -2.69 16 20 C -0.13 -3.79 6.01 30.88 0.19 -3.60 16 21 C -0.13 -2.92 8.08 31.23 0.25 -2.66 16 22 C -0.11 -2.41 7.84 30.88 0.24 -2.17 16 23 C -0.14 -4.46 6.52 30.88 0.20 -4.26 16 24 H 0.05 1.59 5.45 -2.39 -0.01 1.58 16 25 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 30 H 0.36 14.06 5.00 -89.69 -0.45 13.62 16 31 H 0.42 6.56 9.10 -74.05 -0.67 5.89 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.11 2.31 8.09 -2.38 -0.02 2.29 16 34 H 0.07 2.35 7.04 -2.39 -0.02 2.33 16 35 H 0.06 2.04 7.21 -2.39 -0.02 2.02 16 36 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 2.94 7.34 -2.39 -0.02 2.92 16 41 H 0.06 2.25 6.49 -2.38 -0.02 2.24 16 Total: -1.00 -63.75 319.56 2.22 -61.53 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.08 Total: 30.19 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 2.99 Total: -23.41 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.49 Total: -81.22 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.23 Total: -31.38 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -63.75 2.22 -61.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694247170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.711 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds