Wall clock time and date at job start Mon Mar 30 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99568 * 2 1 4 4 H 1.48503 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47268 * 299.99837 * 3 2 1 6 6 H 1.48504 * 109.47089 * 59.99571 * 3 2 1 7 7 C 1.37870 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00403 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99788 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46772 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47295 * 65.00262 * 12 11 10 14 14 C 1.46892 * 110.99830 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46956 * 180.02562 * 14 13 12 16 16 C 1.52947 * 109.41008 * 184.99886 * 15 14 13 17 17 C 1.53184 * 109.44835 * 176.90834 * 16 15 14 18 18 C 1.53146 * 108.88301 * 56.56851 * 17 16 15 19 19 C 1.52846 * 117.67745 * 91.48946 * 18 17 16 20 20 C 1.52805 * 117.74988 * 160.37048 * 18 17 16 21 21 C 1.53153 * 115.00626 * 306.05849 * 18 17 16 22 22 C 1.52934 * 109.41198 * 64.64041 * 15 14 13 23 23 H 0.96990 * 120.00517 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46880 * 59.99777 * 9 7 2 25 25 H 1.09000 * 109.47079 * 300.00133 * 9 7 2 26 26 H 1.08997 * 109.46711 * 60.00438 * 11 10 9 27 27 H 1.08995 * 109.46966 * 300.00412 * 11 10 9 28 28 H 1.09001 * 109.47077 * 304.99544 * 12 11 10 29 29 H 1.09004 * 109.46529 * 185.00023 * 12 11 10 30 30 H 1.00905 * 110.99897 * 56.04359 * 13 12 11 31 31 H 1.08997 * 109.47568 * 60.00072 * 14 13 12 32 32 H 1.09005 * 109.47212 * 299.99589 * 14 13 12 33 33 H 1.08999 * 109.35344 * 304.81441 * 15 14 13 34 34 H 1.08998 * 109.47963 * 296.89702 * 16 15 14 35 35 H 1.09002 * 109.47582 * 56.92060 * 16 15 14 36 36 H 1.08995 * 109.57119 * 176.39071 * 17 16 15 37 37 H 1.09004 * 109.56622 * 296.74630 * 17 16 15 38 38 H 1.08990 * 117.50691 * 215.22036 * 19 18 17 39 39 H 1.09003 * 117.50162 * 0.28495 * 19 18 17 40 40 H 1.09002 * 117.50024 * 359.85790 * 20 18 17 41 41 H 1.09007 * 117.49910 * 144.88817 * 20 18 17 42 42 H 1.08998 * 109.57351 * 294.11915 * 21 18 17 43 43 H 1.09004 * 109.56945 * 173.75509 * 21 18 17 44 44 H 1.08996 * 109.47798 * 303.08293 * 22 15 14 45 45 H 1.09004 * 109.47480 * 63.09767 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5654 -4.8754 0.0011 12 6 2.6485 -5.9560 0.0017 13 7 3.4085 -5.8870 1.2570 14 6 4.4593 -6.9129 1.2932 15 6 5.2269 -6.8101 2.6127 16 6 6.3979 -7.7940 2.5975 17 6 7.2123 -7.6375 3.8854 18 6 6.2852 -7.8458 5.0864 19 6 6.1606 -9.2611 5.6500 20 6 6.9274 -8.1904 6.4295 21 6 5.0345 -6.9620 5.0998 22 6 4.2879 -7.1395 3.7741 23 1 -0.4850 0.8399 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5568 0.8903 26 1 0.9451 -4.9827 -0.8887 27 1 0.9456 -4.9821 0.8913 28 1 3.3221 -5.7959 -0.8402 29 1 2.1825 -6.9374 -0.0874 30 1 2.7965 -5.9683 2.0551 31 1 5.1455 -6.7597 0.4604 32 1 4.0055 -7.9008 1.2133 33 1 5.6077 -5.7957 2.7311 34 1 6.0159 -8.8126 2.5307 35 1 7.0349 -7.5874 1.7374 36 1 8.0092 -8.3809 3.9060 37 1 7.6429 -6.6370 3.9257 38 1 5.1879 -9.5652 6.0364 39 1 6.7428 -10.0474 5.1694 40 1 8.0138 -8.2724 6.4617 41 1 6.4590 -7.7902 7.3288 42 1 5.3261 -5.9184 5.2177 43 1 4.3873 -7.2577 5.9256 44 1 3.4289 -6.4690 3.7482 45 1 3.9468 -8.1709 3.6843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695683565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:51 Heat of formation + Delta-G solvation = -52.243019 kcal Electronic energy + Delta-G solvation = -20236.638408 eV Core-core repulsion = 17253.502396 eV Total energy + Delta-G solvation = -2983.136012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72496 -37.31850 -36.22717 -34.12554 -32.58906 -31.08342 -29.85471 -27.58758 -26.34078 -23.67206 -22.97840 -22.54347 -22.22914 -21.35493 -20.39679 -18.80310 -16.41220 -15.97436 -15.57800 -15.56004 -15.33991 -15.02594 -14.30094 -14.09687 -13.95549 -13.66773 -13.36334 -13.27679 -12.91216 -12.48478 -12.31631 -12.10442 -11.81811 -11.77080 -11.50272 -11.29246 -11.13765 -10.97326 -10.74822 -10.69671 -10.62297 -10.41557 -10.15435 -10.08342 -9.91410 -9.69128 -9.01240 -8.75084 -8.12427 -8.06064 -6.05140 -4.05793 3.33329 3.39519 3.47000 3.54508 4.29544 4.38382 4.41174 4.51962 4.64751 4.73754 4.88988 4.92035 5.07052 5.16334 5.19457 5.31403 5.37411 5.40356 5.43763 5.45815 5.58580 5.63284 5.65260 5.69267 5.76000 5.83741 5.88909 5.89599 5.97773 6.01490 6.04184 6.07406 6.13935 6.15567 6.31360 6.36459 6.45168 7.16783 7.28099 7.50146 7.63628 7.87450 8.23489 8.68736 9.09676 9.58992 11.06697 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.003134 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.663864 B = 8931.518131 C = 9536.922760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.676 5.676 14 C 0.065 3.935 15 C -0.085 4.085 16 C -0.109 4.109 17 C -0.080 4.080 18 C -0.117 4.117 19 C -0.176 4.176 20 C -0.180 4.180 21 C -0.081 4.081 22 C -0.112 4.112 23 H 0.262 0.738 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.338 0.662 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.112 -19.710 9.061 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.118 3.882 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.064 4.064 13 N -0.308 5.308 14 C -0.065 4.065 15 C -0.104 4.104 16 C -0.147 4.147 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.213 4.213 20 C -0.217 4.217 21 C -0.118 4.118 22 C -0.150 4.150 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.157 0.843 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.574 -19.058 8.821 23.978 hybrid contribution -0.602 -0.013 0.188 0.631 sum 10.971 -19.071 9.008 23.774 Atomic orbital electron populations 1.69975 1.06103 1.26923 1.51079 1.24955 0.94966 0.99429 0.95316 0.86294 0.80103 0.82651 0.77531 1.19435 1.20929 1.20894 1.21116 0.94151 0.89345 1.50072 0.91446 1.20188 0.88882 0.83990 0.95095 1.87959 1.34614 1.12339 1.95010 1.22230 0.93907 0.86398 0.98783 1.21971 0.95729 0.95474 0.93241 1.60355 1.16355 1.49930 1.04192 1.21987 0.94464 0.92269 0.97760 1.21134 0.95054 1.00362 0.93856 1.21512 0.96755 0.99331 0.97085 1.21132 0.96207 1.01815 0.92625 1.21518 0.98583 0.97258 0.94371 1.22997 1.01845 0.92176 1.04327 1.22988 0.99450 1.03841 0.95390 1.21135 0.93996 0.99191 0.97497 1.21570 0.98208 1.01173 0.94022 0.92819 0.98031 0.97915 0.94264 0.94890 0.90468 0.95057 0.84323 0.91179 0.96057 0.89906 0.92200 0.91819 0.92125 0.91324 0.89094 0.89149 0.89052 0.88977 0.91176 0.92084 0.91425 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -15.41 9.43 -34.44 -0.32 -15.73 16 8 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 9 C 0.19 5.46 5.69 36.01 0.20 5.66 16 10 O -0.38 -9.51 10.27 -35.23 -0.36 -9.87 16 11 C 0.07 1.24 6.22 37.16 0.23 1.47 16 12 C 0.06 1.00 6.07 -3.82 -0.02 0.98 16 13 N -0.68 -10.16 6.45 -113.78 -0.73 -10.90 16 14 C 0.06 0.78 5.14 -3.83 -0.02 0.76 16 15 C -0.09 -0.92 2.31 -90.68 -0.21 -1.13 16 16 C -0.11 -0.99 5.21 -26.66 -0.14 -1.13 16 17 C -0.08 -0.70 5.67 -26.56 -0.15 -0.85 16 18 C -0.12 -1.03 1.97 -154.53 -0.31 -1.33 16 19 C -0.18 -1.40 9.93 -26.79 -0.27 -1.67 16 20 C -0.18 -1.43 9.99 -26.81 -0.27 -1.70 16 21 C -0.08 -0.77 5.67 -26.56 -0.15 -0.92 16 22 C -0.11 -1.13 5.04 -26.67 -0.13 -1.27 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.34 4.80 6.90 -39.29 -0.27 4.53 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.07 0.74 6.53 -51.93 -0.34 0.40 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -31.70 356.96 -10.26 -41.96 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -8.61 Total: -1.73 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.65 Total: -15.36 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.00 Total: -37.67 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.36 Total: -9.87 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.70 -10.26 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695683565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.281 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds