Wall clock time and date at job start Mon Mar 30 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99568 * 2 1 4 4 H 1.48503 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47268 * 299.99837 * 3 2 1 6 6 H 1.48504 * 109.47089 * 59.99571 * 3 2 1 7 7 C 1.37870 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00403 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99788 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46772 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47295 * 65.00262 * 12 11 10 14 14 C 1.46892 * 110.99830 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46956 * 180.02562 * 14 13 12 16 16 C 1.52947 * 109.41008 * 184.99886 * 15 14 13 17 17 C 1.53184 * 109.44835 * 176.90834 * 16 15 14 18 18 C 1.53146 * 108.88301 * 56.56851 * 17 16 15 19 19 C 1.52846 * 117.67745 * 91.48946 * 18 17 16 20 20 C 1.52805 * 117.74988 * 160.37048 * 18 17 16 21 21 C 1.53153 * 115.00626 * 306.05849 * 18 17 16 22 22 C 1.52934 * 109.41198 * 64.64041 * 15 14 13 23 23 H 0.96990 * 120.00517 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46880 * 59.99777 * 9 7 2 25 25 H 1.09000 * 109.47079 * 300.00133 * 9 7 2 26 26 H 1.08997 * 109.46711 * 60.00438 * 11 10 9 27 27 H 1.08995 * 109.46966 * 300.00412 * 11 10 9 28 28 H 1.09001 * 109.47077 * 304.99544 * 12 11 10 29 29 H 1.09004 * 109.46529 * 185.00023 * 12 11 10 30 30 H 1.00905 * 110.99897 * 56.04359 * 13 12 11 31 31 H 1.08997 * 109.47568 * 60.00072 * 14 13 12 32 32 H 1.09005 * 109.47212 * 299.99589 * 14 13 12 33 33 H 1.08999 * 109.35344 * 304.81441 * 15 14 13 34 34 H 1.08998 * 109.47963 * 296.89702 * 16 15 14 35 35 H 1.09002 * 109.47582 * 56.92060 * 16 15 14 36 36 H 1.08995 * 109.57119 * 176.39071 * 17 16 15 37 37 H 1.09004 * 109.56622 * 296.74630 * 17 16 15 38 38 H 1.08990 * 117.50691 * 215.22036 * 19 18 17 39 39 H 1.09003 * 117.50162 * 0.28495 * 19 18 17 40 40 H 1.09002 * 117.50024 * 359.85790 * 20 18 17 41 41 H 1.09007 * 117.49910 * 144.88817 * 20 18 17 42 42 H 1.08998 * 109.57351 * 294.11915 * 21 18 17 43 43 H 1.09004 * 109.56945 * 173.75509 * 21 18 17 44 44 H 1.08996 * 109.47798 * 303.08293 * 22 15 14 45 45 H 1.09004 * 109.47480 * 63.09767 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5654 -4.8754 0.0011 12 6 2.6485 -5.9560 0.0017 13 7 3.4085 -5.8870 1.2570 14 6 4.4593 -6.9129 1.2932 15 6 5.2269 -6.8101 2.6127 16 6 6.3979 -7.7940 2.5975 17 6 7.2123 -7.6375 3.8854 18 6 6.2852 -7.8458 5.0864 19 6 6.1606 -9.2611 5.6500 20 6 6.9274 -8.1904 6.4295 21 6 5.0345 -6.9620 5.0998 22 6 4.2879 -7.1395 3.7741 23 1 -0.4850 0.8399 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5568 0.8903 26 1 0.9451 -4.9827 -0.8887 27 1 0.9456 -4.9821 0.8913 28 1 3.3221 -5.7959 -0.8402 29 1 2.1825 -6.9374 -0.0874 30 1 2.7965 -5.9683 2.0551 31 1 5.1455 -6.7597 0.4604 32 1 4.0055 -7.9008 1.2133 33 1 5.6077 -5.7957 2.7311 34 1 6.0159 -8.8126 2.5307 35 1 7.0349 -7.5874 1.7374 36 1 8.0092 -8.3809 3.9060 37 1 7.6429 -6.6370 3.9257 38 1 5.1879 -9.5652 6.0364 39 1 6.7428 -10.0474 5.1694 40 1 8.0138 -8.2724 6.4617 41 1 6.4590 -7.7902 7.3288 42 1 5.3261 -5.9184 5.2177 43 1 4.3873 -7.2577 5.9256 44 1 3.4289 -6.4690 3.7482 45 1 3.9468 -8.1709 3.6843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695683565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:50 Heat of formation + Delta-G solvation = -71.178072 kcal Electronic energy + Delta-G solvation = -20237.459493 eV Core-core repulsion = 17253.502396 eV Total energy + Delta-G solvation = -2983.957098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47231 -38.83534 -37.50692 -35.33679 -34.68787 -31.83956 -31.10757 -29.30454 -27.85304 -24.62698 -24.43733 -23.78837 -23.19242 -22.67263 -21.23689 -19.53711 -18.63331 -17.59084 -16.88802 -16.72801 -16.27122 -16.19989 -16.08224 -15.34549 -15.11731 -14.78783 -14.51494 -14.31865 -14.10663 -13.72816 -13.55357 -13.12840 -13.08984 -12.95392 -12.75821 -12.65956 -12.45688 -12.29272 -12.24283 -11.96034 -11.88727 -11.65402 -11.43168 -11.23442 -10.92330 -10.86260 -10.76641 -10.39643 -10.18539 -9.22143 -8.31562 -6.43410 1.39949 1.41648 1.56766 2.35895 2.90117 3.01938 3.19446 3.28891 3.68282 3.80893 3.91511 4.03672 4.10184 4.21123 4.26310 4.27404 4.38464 4.45487 4.56452 4.60494 4.62607 4.64637 4.74831 4.80449 4.82198 4.83725 4.96565 4.99823 5.03087 5.06568 5.15931 5.19304 5.19680 5.20901 5.26731 5.31486 5.38043 5.55416 5.56532 5.60129 5.98212 6.17145 6.50154 6.59181 6.87505 7.28979 8.81148 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.003134 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.663864 B = 8931.518131 C = 9536.922760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.397 6.397 11 C 0.054 3.946 12 C 0.075 3.925 13 N -0.700 5.700 14 C 0.069 3.931 15 C -0.080 4.080 16 C -0.103 4.103 17 C -0.079 4.079 18 C -0.129 4.129 19 C -0.170 4.170 20 C -0.179 4.179 21 C -0.080 4.080 22 C -0.108 4.108 23 H 0.271 0.729 24 H -0.016 1.016 25 H -0.017 1.017 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.340 0.660 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 -20.466 9.382 25.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.316 6.316 11 C -0.023 4.023 12 C -0.054 4.054 13 N -0.333 5.333 14 C -0.060 4.060 15 C -0.099 4.099 16 C -0.141 4.141 17 C -0.116 4.116 18 C -0.129 4.129 19 C -0.207 4.207 20 C -0.216 4.216 21 C -0.118 4.118 22 C -0.145 4.145 23 H 0.079 0.921 24 H 0.002 0.998 25 H 0.001 0.999 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.582 -19.844 9.143 25.213 hybrid contribution -0.961 0.146 0.102 0.978 sum 11.620 -19.699 9.245 24.669 Atomic orbital electron populations 1.70073 1.07730 1.28561 1.50767 1.25973 0.95991 1.03408 0.93960 0.85130 0.78618 0.77272 0.78337 1.18954 1.19508 1.19564 1.21413 0.94007 0.90957 1.51889 0.92290 1.19806 0.88684 0.85038 0.93197 1.87914 1.34727 1.13934 1.95065 1.22607 0.95606 0.84646 0.99443 1.21872 0.94754 0.95451 0.93347 1.60325 1.17068 1.51840 1.04102 1.21999 0.93638 0.92205 0.98177 1.21063 0.95696 0.99567 0.93588 1.21465 0.96051 0.99089 0.97511 1.21119 0.96436 1.01726 0.92360 1.21488 0.98396 0.97987 0.95008 1.23049 1.02087 0.91786 1.03757 1.23053 0.99951 1.03645 0.94932 1.21102 0.94620 0.98717 0.97334 1.21516 0.97647 1.01284 0.94088 0.92051 0.99817 0.99901 0.93389 0.94352 0.91085 0.91517 0.84011 0.91625 0.94310 0.92414 0.91297 0.91571 0.90832 0.92245 0.88844 0.88286 0.88330 0.88866 0.92560 0.91548 0.92684 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 2 C 0.00 0.28 5.46 84.65 0.46 0.75 16 3 Si 0.98 45.57 29.54 68.60 2.03 47.59 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -33.70 9.43 25.60 0.24 -33.46 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.15 5.69 71.24 0.41 12.56 16 10 O -0.40 -20.33 10.27 -148.98 -1.53 -21.86 16 11 C 0.05 2.07 6.22 71.98 0.45 2.52 16 12 C 0.07 2.23 6.07 86.30 0.52 2.75 16 13 N -0.70 -20.73 6.45 -513.89 -3.31 -24.04 16 14 C 0.07 1.57 5.14 86.31 0.44 2.02 16 15 C -0.08 -1.69 2.31 -10.83 -0.02 -1.71 16 16 C -0.10 -1.73 5.21 30.64 0.16 -1.57 16 17 C -0.08 -1.27 5.67 30.70 0.17 -1.09 16 18 C -0.13 -2.08 1.97 -52.20 -0.10 -2.19 16 19 C -0.17 -2.34 9.93 30.55 0.30 -2.03 16 20 C -0.18 -2.55 9.99 30.54 0.31 -2.25 16 21 C -0.08 -1.49 5.67 30.71 0.17 -1.32 16 22 C -0.11 -2.11 5.04 30.63 0.15 -1.95 16 23 H 0.27 15.30 8.31 -92.72 -0.77 14.53 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.34 9.59 6.90 -89.69 -0.62 8.97 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 0.99 8.09 -2.39 -0.02 0.98 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.14 8.09 -2.38 -0.02 1.12 16 44 H 0.05 1.20 6.53 -2.39 -0.02 1.19 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.02 356.96 1.44 -66.58 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.30 Total: 15.64 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.67 Total: -26.99 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -3.03 Total: -80.97 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.53 Total: -21.86 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -68.02 1.44 -66.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695683565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.597 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds