Wall clock time and date at job start Mon Mar 30 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46900 * 110.99503 * 274.99918 * 13 2 1 15 15 C 1.53001 * 109.47206 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46947 * 299.99958 * 15 14 13 17 17 C 1.53000 * 109.47248 * 59.99481 * 15 14 13 18 18 C 1.50696 * 109.47505 * 179.97438 * 15 14 13 19 19 C 1.33394 * 125.20558 * 180.02562 * 18 15 14 20 20 C 1.38425 * 114.92210 * 179.97438 * 19 18 15 21 21 C 1.33387 * 114.91824 * 359.97438 * 20 19 18 22 22 S 1.75881 * 109.59742 * 359.75499 * 21 20 19 23 23 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 25 25 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 26 26 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 27 27 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.00892 * 111.00616 * 151.04626 * 13 2 1 30 30 H 1.09000 * 109.47080 * 299.99348 * 14 13 2 31 31 H 1.08999 * 109.47391 * 59.99755 * 14 13 2 32 32 H 1.09007 * 109.47594 * 59.99965 * 16 15 14 33 33 H 1.09004 * 109.47640 * 179.97438 * 16 15 14 34 34 H 1.09005 * 109.47513 * 299.99687 * 16 15 14 35 35 H 1.09007 * 109.46955 * 60.00340 * 17 15 14 36 36 H 1.09002 * 109.47367 * 179.97438 * 17 15 14 37 37 H 1.08996 * 109.47534 * 300.00571 * 17 15 14 38 38 H 1.07999 * 122.53597 * 359.95003 * 19 18 15 39 39 H 1.07989 * 122.54089 * 180.02562 * 20 19 18 40 40 H 1.08004 * 125.20078 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0197 -0.6927 1.1993 14 6 2.0825 0.2224 2.3468 15 6 2.5963 -0.5331 3.5741 16 6 1.6474 -1.6895 3.8952 17 6 3.9936 -1.0854 3.2850 18 6 2.6613 0.4056 4.7511 19 6 3.0665 0.0738 5.9780 20 6 3.0415 1.1063 6.8997 21 6 2.6164 2.2766 6.4212 22 16 2.2228 2.1086 4.7153 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6054 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 2.6101 -1.9094 -3.2568 29 1 2.9173 -1.1206 1.0287 30 1 2.7590 1.0459 2.1182 31 1 1.0871 0.6161 2.5525 32 1 1.6007 -2.3686 3.0438 33 1 2.0135 -2.2281 4.7693 34 1 0.6518 -1.2962 4.1012 35 1 4.6697 -0.2615 3.0562 36 1 4.3598 -1.6232 4.1595 37 1 3.9470 -1.7643 2.4336 38 1 3.3893 -0.9248 6.2328 39 1 3.3439 0.9744 7.9279 40 1 2.5307 3.1888 6.9931 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:53 Heat of formation + Delta-G solvation = 4.973242 kcal Electronic energy + Delta-G solvation = -18516.778696 eV Core-core repulsion = 15843.043543 eV Total energy + Delta-G solvation = -2673.735153 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.86361 -37.07377 -35.11133 -32.70658 -29.90426 -28.30333 -27.21019 -26.93102 -25.40850 -23.66986 -22.79444 -20.00631 -19.58661 -18.78721 -16.99553 -16.59588 -15.59520 -15.31135 -14.50843 -14.28772 -13.77445 -13.70322 -13.41822 -12.96842 -12.82460 -12.51064 -12.49027 -12.20425 -11.82893 -11.70241 -11.36229 -11.31896 -11.15201 -10.99951 -10.94910 -10.76469 -10.71357 -10.42051 -10.22535 -10.12675 -9.48204 -8.60925 -8.55780 -8.48087 -8.35510 -7.71032 -6.37821 -4.07682 1.02159 1.64607 2.04176 2.74656 3.41977 3.43184 3.61914 4.52290 4.53116 4.89786 5.03441 5.06579 5.19459 5.32600 5.42631 5.50506 5.60015 5.79026 5.85998 5.88016 5.95653 6.03985 6.07222 6.13855 6.17431 6.20616 6.21844 6.32927 6.45090 6.46458 6.50037 6.58611 6.79252 6.82867 7.28418 7.40699 7.90580 8.13857 8.22685 8.42157 8.86201 9.64775 11.02778 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.004910 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.376155 B = 5701.770400 C = 6177.711609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.029 0.971 4 C 0.007 3.993 5 C -0.604 4.604 6 H 0.045 0.955 7 C 0.019 3.981 8 N -0.910 5.910 9 Si 1.064 2.936 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.065 3.935 15 C 0.006 3.994 16 C -0.123 4.123 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.151 4.151 20 C -0.130 4.130 21 C -0.232 4.232 22 S 0.099 5.901 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.011 0.989 27 H 0.017 0.983 28 H 0.270 0.730 29 H 0.356 0.644 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 4.856 18.540 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 H 0.048 0.952 4 C -0.030 4.030 5 C -0.642 4.642 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.546 5.546 9 Si 0.893 3.107 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.312 5.312 14 C -0.066 4.066 15 C 0.004 3.996 16 C -0.181 4.181 17 C -0.198 4.198 18 C -0.262 4.262 19 C -0.180 4.180 20 C -0.161 4.161 21 C -0.367 4.367 22 S 0.364 5.636 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.179 0.821 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.337 5.197 16.702 17.647 hybrid contribution -0.024 0.279 1.930 1.950 sum -2.361 5.476 18.632 19.563 Atomic orbital electron populations 1.21808 0.96700 1.01303 0.99579 1.21451 0.93228 0.95834 0.91026 0.95245 1.19399 0.96516 0.95559 0.91527 1.21975 0.91905 1.38790 1.11535 0.93696 1.25763 1.06688 0.93422 0.92680 1.70773 1.10504 1.39285 1.34018 0.83607 0.74643 0.76232 0.76241 1.20738 1.21587 1.21388 1.60604 1.34957 1.31654 1.04019 1.22014 0.99668 0.93893 0.91020 1.19172 0.97065 0.93391 0.89988 1.21739 0.97841 0.96887 1.01650 1.21919 0.94410 1.01277 1.02187 1.24713 1.05625 0.96770 0.99047 1.20011 1.05020 1.00750 0.92240 1.20116 1.02835 0.92329 1.00829 1.25617 1.10168 1.02447 0.98516 1.84445 1.65692 1.06329 1.07124 0.92652 0.94318 0.93422 0.97047 0.96477 0.91970 0.82111 0.95543 0.91582 0.90290 0.93402 0.93030 0.92654 0.92523 0.90696 0.84541 0.84755 0.82362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.42 37.16 0.35 -2.10 16 2 C 0.09 1.96 2.59 -67.71 -0.18 1.79 16 3 H 0.03 0.65 7.80 -51.93 -0.41 0.24 16 4 C 0.01 0.18 3.88 -27.88 -0.11 0.07 16 5 C -0.60 -16.59 8.12 -34.44 -0.28 -16.87 16 6 H 0.04 1.22 7.49 -52.49 -0.39 0.82 16 7 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 8 N -0.91 -27.56 13.65 55.43 0.76 -26.81 16 9 Si 1.06 25.01 29.90 -169.99 -5.08 19.92 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.68 -12.77 5.52 -106.72 -0.59 -13.36 16 14 C 0.06 1.05 3.53 -3.82 -0.01 1.03 16 15 C 0.01 0.09 0.73 -155.66 -0.11 -0.03 16 16 C -0.12 -1.62 8.18 37.16 0.30 -1.32 16 17 C -0.14 -1.96 8.00 37.16 0.30 -1.66 16 18 C -0.14 -1.88 5.13 -36.00 -0.18 -2.06 16 19 C -0.15 -1.76 9.31 -41.21 -0.38 -2.15 16 20 C -0.13 -1.38 10.18 -41.21 -0.42 -1.80 16 21 C -0.23 -2.48 11.23 29.04 0.33 -2.16 16 22 S 0.10 1.24 21.84 -107.50 -2.35 -1.11 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.01 0.30 8.01 -51.93 -0.42 -0.11 16 27 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 28 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 29 H 0.36 7.30 5.25 -39.30 -0.21 7.10 16 30 H 0.03 0.46 7.86 -51.93 -0.41 0.05 16 31 H 0.07 1.06 7.26 -51.93 -0.38 0.68 16 32 H 0.08 1.14 7.60 -51.92 -0.39 0.74 16 33 H 0.05 0.55 7.94 -51.93 -0.41 0.14 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.06 0.69 7.93 -51.93 -0.41 0.27 16 37 H 0.07 1.14 6.57 -51.93 -0.34 0.80 16 38 H 0.14 1.42 8.01 -52.49 -0.42 1.00 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -29.14 331.09 -9.39 -38.53 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.62 Total: 4.65 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -0.50 Total: -26.81 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.17 Total: -40.17 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.92 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.35 Total: -1.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.14 -9.39 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.499 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds