Wall clock time and date at job start Mon Mar 30 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46900 * 110.99503 * 274.99918 * 13 2 1 15 15 C 1.53001 * 109.47206 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46947 * 299.99958 * 15 14 13 17 17 C 1.53000 * 109.47248 * 59.99481 * 15 14 13 18 18 C 1.50696 * 109.47505 * 179.97438 * 15 14 13 19 19 C 1.33394 * 125.20558 * 180.02562 * 18 15 14 20 20 C 1.38425 * 114.92210 * 179.97438 * 19 18 15 21 21 C 1.33387 * 114.91824 * 359.97438 * 20 19 18 22 22 S 1.75881 * 109.59742 * 359.75499 * 21 20 19 23 23 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 25 25 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 26 26 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 27 27 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.00892 * 111.00616 * 151.04626 * 13 2 1 30 30 H 1.09000 * 109.47080 * 299.99348 * 14 13 2 31 31 H 1.08999 * 109.47391 * 59.99755 * 14 13 2 32 32 H 1.09007 * 109.47594 * 59.99965 * 16 15 14 33 33 H 1.09004 * 109.47640 * 179.97438 * 16 15 14 34 34 H 1.09005 * 109.47513 * 299.99687 * 16 15 14 35 35 H 1.09007 * 109.46955 * 60.00340 * 17 15 14 36 36 H 1.09002 * 109.47367 * 179.97438 * 17 15 14 37 37 H 1.08996 * 109.47534 * 300.00571 * 17 15 14 38 38 H 1.07999 * 122.53597 * 359.95003 * 19 18 15 39 39 H 1.07989 * 122.54089 * 180.02562 * 20 19 18 40 40 H 1.08004 * 125.20078 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0197 -0.6927 1.1993 14 6 2.0825 0.2224 2.3468 15 6 2.5963 -0.5331 3.5741 16 6 1.6474 -1.6895 3.8952 17 6 3.9936 -1.0854 3.2850 18 6 2.6613 0.4056 4.7511 19 6 3.0665 0.0738 5.9780 20 6 3.0415 1.1063 6.8997 21 6 2.6164 2.2766 6.4212 22 16 2.2228 2.1086 4.7153 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6054 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 2.6101 -1.9094 -3.2568 29 1 2.9173 -1.1206 1.0287 30 1 2.7590 1.0459 2.1182 31 1 1.0871 0.6161 2.5525 32 1 1.6007 -2.3686 3.0438 33 1 2.0135 -2.2281 4.7693 34 1 0.6518 -1.2962 4.1012 35 1 4.6697 -0.2615 3.0562 36 1 4.3598 -1.6232 4.1595 37 1 3.9470 -1.7643 2.4336 38 1 3.3893 -0.9248 6.2328 39 1 3.3439 0.9744 7.9279 40 1 2.5307 3.1888 6.9931 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:53 Heat of formation + Delta-G solvation = -10.602093 kcal Electronic energy + Delta-G solvation = -18517.454093 eV Core-core repulsion = 15843.043543 eV Total energy + Delta-G solvation = -2674.410550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98238 -38.35466 -36.54352 -34.70248 -31.39436 -29.30697 -28.97871 -28.13984 -26.68888 -25.11038 -24.43165 -21.50320 -20.88837 -19.67951 -18.92972 -17.89401 -16.81139 -16.60890 -15.92983 -15.64279 -15.44114 -15.18812 -14.62722 -14.47098 -14.23100 -13.74157 -13.44501 -13.33917 -13.15010 -13.09600 -12.94787 -12.84410 -12.66845 -12.51775 -12.31497 -12.14039 -12.00657 -11.93835 -11.80156 -11.37824 -11.26374 -10.64583 -10.54804 -9.51059 -9.43293 -9.25216 -8.66773 -6.37174 0.13983 0.73940 1.16674 1.51405 1.58819 1.77811 1.90196 2.55706 3.11817 3.28981 3.77150 3.83140 3.97940 4.17111 4.27403 4.29477 4.44029 4.56676 4.62028 4.64895 4.72210 4.74553 4.82755 4.87702 4.98219 5.02310 5.05636 5.08040 5.13912 5.23180 5.29681 5.33648 5.41851 5.42975 5.51376 5.64586 5.96808 6.18247 6.26330 6.52542 6.61346 7.44009 8.74058 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.004910 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.376155 B = 5701.770400 C = 6177.711609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.100 3.900 3 H 0.018 0.982 4 C 0.012 3.988 5 C -0.608 4.608 6 H 0.046 0.954 7 C -0.033 4.033 8 N -0.937 5.937 9 Si 1.111 2.889 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.266 1.266 13 N -0.673 5.673 14 C 0.071 3.929 15 C 0.013 3.987 16 C -0.118 4.118 17 C -0.137 4.137 18 C -0.165 4.165 19 C -0.143 4.143 20 C -0.136 4.136 21 C -0.222 4.222 22 S 0.061 5.939 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.052 0.948 26 H -0.010 1.010 27 H -0.003 1.003 28 H 0.256 0.744 29 H 0.346 0.654 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 5.334 21.215 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.010 4.010 3 H 0.036 0.964 4 C -0.025 4.025 5 C -0.646 4.646 6 H 0.065 0.935 7 C -0.231 4.231 8 N -0.574 5.574 9 Si 0.933 3.067 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.191 1.191 13 N -0.307 5.307 14 C -0.059 4.059 15 C 0.011 3.989 16 C -0.176 4.176 17 C -0.196 4.196 18 C -0.283 4.283 19 C -0.173 4.173 20 C -0.166 4.166 21 C -0.357 4.357 22 S 0.325 5.675 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.015 0.985 28 H 0.065 0.935 29 H 0.167 0.833 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.620 5.686 19.402 20.282 hybrid contribution -0.286 0.168 1.172 1.218 sum -1.906 5.853 20.574 21.475 Atomic orbital electron populations 1.21711 0.94263 1.01636 1.00900 1.21308 0.95176 0.94462 0.90032 0.96427 1.19296 0.95641 0.94607 0.92948 1.22292 0.93115 1.37976 1.11238 0.93540 1.27252 1.10939 0.92636 0.92279 1.70907 1.09783 1.41328 1.35375 0.83009 0.69631 0.77169 0.76909 1.21004 1.19952 1.19108 1.60646 1.34188 1.31975 1.03901 1.22020 0.99677 0.93284 0.90968 1.19027 0.96899 0.93621 0.89347 1.21682 0.97759 0.96371 1.01772 1.21894 0.94493 1.00722 1.02449 1.24560 1.07878 0.96637 0.99203 1.20299 1.03459 1.01790 0.91735 1.20431 1.02409 0.91746 1.01974 1.25931 1.09107 1.03624 0.97022 1.84575 1.66625 1.06733 1.09558 0.92786 0.92162 0.92929 0.99152 0.98478 0.93456 0.83321 0.96912 0.91245 0.91915 0.91405 0.93071 0.93664 0.90323 0.92417 0.83031 0.81943 0.79946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.42 71.98 0.68 -3.85 16 2 C 0.10 4.23 2.59 44.92 0.12 4.35 16 3 H 0.02 0.79 7.80 -2.39 -0.02 0.77 16 4 C 0.01 0.64 3.88 29.85 0.12 0.76 16 5 C -0.61 -34.02 8.12 25.60 0.21 -33.82 16 6 H 0.05 2.54 7.49 -2.91 -0.02 2.52 16 7 C -0.03 -1.90 5.46 84.65 0.46 -1.43 16 8 N -0.94 -58.03 13.65 21.45 0.29 -57.74 16 9 Si 1.11 50.11 29.90 68.60 2.05 52.16 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 N -0.67 -25.64 5.52 -491.56 -2.71 -28.35 16 14 C 0.07 2.28 3.53 86.30 0.30 2.58 16 15 C 0.01 0.36 0.73 -52.93 -0.04 0.32 16 16 C -0.12 -2.93 8.18 71.98 0.59 -2.34 16 17 C -0.14 -3.73 8.00 71.98 0.58 -3.15 16 18 C -0.17 -4.02 5.13 24.59 0.13 -3.90 16 19 C -0.14 -2.92 9.31 21.22 0.20 -2.72 16 20 C -0.14 -2.40 10.18 21.22 0.22 -2.18 16 21 C -0.22 -4.10 11.23 66.72 0.75 -3.35 16 22 S 0.06 1.44 21.84 -56.49 -1.23 0.20 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H -0.01 -0.55 8.01 -2.39 -0.02 -0.56 16 27 H 0.00 -0.17 8.00 -2.39 -0.02 -0.19 16 28 H 0.26 16.10 7.22 -92.71 -0.67 15.43 16 29 H 0.35 14.45 5.25 -89.70 -0.47 13.98 16 30 H 0.01 0.45 7.86 -2.39 -0.02 0.43 16 31 H 0.07 2.18 7.26 -2.39 -0.02 2.17 16 32 H 0.06 1.76 7.60 -2.38 -0.02 1.74 16 33 H 0.07 1.40 7.94 -2.38 -0.02 1.38 16 34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.08 1.74 7.93 -2.39 -0.02 1.73 16 37 H 0.06 1.75 6.57 -2.39 -0.02 1.73 16 38 H 0.15 2.59 8.01 -2.91 -0.02 2.56 16 39 H 0.16 1.95 8.06 -2.92 -0.02 1.93 16 40 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -63.15 331.09 3.32 -59.83 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.63 Total: 22.63 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 4.30 Total: -48.73 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.42 Total: -86.09 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.23 Total: 0.20 kcal Total: -63.15 3.32 -59.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.225 kcal (2) G-P(sol) polarization free energy of solvation -63.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds