Wall clock time and date at job start Mon Mar 30 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47163 * 2 1 4 4 C 1.53002 * 109.47007 * 120.00140 * 2 1 3 5 5 C 1.50698 * 109.46907 * 184.99787 * 4 2 1 6 6 H 1.08001 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99909 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00120 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99916 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47333 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46998 * 120.00218 * 9 7 5 12 12 H 1.48506 * 109.47165 * 240.00205 * 9 7 5 13 13 N 1.46893 * 109.46889 * 240.00240 * 2 1 3 14 14 C 1.46898 * 111.00147 * 85.00174 * 13 2 1 15 15 C 1.53006 * 109.47360 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47134 * 59.99965 * 15 14 13 17 17 C 1.52999 * 109.46731 * 299.99957 * 15 14 13 18 18 C 1.50699 * 109.47064 * 180.02562 * 15 14 13 19 19 C 1.33390 * 125.20296 * 180.02562 * 18 15 14 20 20 C 1.38425 * 114.92123 * 179.97438 * 19 18 15 21 21 C 1.33383 * 114.92174 * 359.97438 * 20 19 18 22 22 S 1.75887 * 109.59638 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.46853 * 299.99604 * 1 2 3 24 24 H 1.08997 * 109.46963 * 59.99618 * 1 2 3 25 25 H 1.08995 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47296 * 305.00229 * 4 2 1 27 27 H 1.09002 * 109.46929 * 65.00195 * 4 2 1 28 28 H 0.97003 * 120.00383 * 179.97438 * 8 7 5 29 29 H 1.00893 * 111.00269 * 321.04440 * 13 2 1 30 30 H 1.09001 * 109.47382 * 59.99768 * 14 13 2 31 31 H 1.09004 * 109.46994 * 299.99712 * 14 13 2 32 32 H 1.08998 * 109.47511 * 180.02562 * 16 15 14 33 33 H 1.09007 * 109.47136 * 300.00154 * 16 15 14 34 34 H 1.09000 * 109.47598 * 59.99734 * 16 15 14 35 35 H 1.09001 * 109.47125 * 299.99577 * 17 15 14 36 36 H 1.08997 * 109.47137 * 59.99986 * 17 15 14 37 37 H 1.09000 * 109.46677 * 179.97438 * 17 15 14 38 38 H 1.07997 * 122.53530 * 0.23800 * 19 18 15 39 39 H 1.08001 * 122.53542 * 180.02562 * 20 19 18 40 40 H 1.07999 * 125.20481 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1927 2.3583 8 7 3.5764 -1.8370 3.3000 9 14 6.0920 -1.0603 2.4373 10 1 6.5836 -0.2901 1.2668 11 1 6.4861 -0.3641 3.6883 12 1 6.6862 -2.4212 2.4199 13 7 2.0196 -0.6924 -1.1994 14 6 2.0824 0.2227 -2.3468 15 6 2.5962 -0.5327 -3.5742 16 6 1.6472 -1.6890 -3.8955 17 6 3.9935 -1.0849 -3.2852 18 6 2.6612 0.4062 -4.7511 19 6 3.0654 0.0744 -5.9782 20 6 3.0396 1.1067 -6.9000 21 6 2.6138 2.2768 -6.4217 22 16 2.2132 2.1068 -4.7175 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6054 -0.2619 2.1370 27 1 1.7516 -1.7716 1.2055 28 1 4.0607 -2.2438 4.0354 29 1 1.4496 -1.4978 -1.4100 30 1 2.7588 1.0463 -2.1182 31 1 1.0870 0.6164 -2.5525 32 1 2.0134 -2.2275 -4.7696 33 1 1.6006 -2.3681 -3.0441 34 1 0.6517 -1.2957 -4.1013 35 1 4.6695 -0.2611 -3.0563 36 1 3.9468 -1.7639 -2.4338 37 1 4.3592 -1.6235 -4.1594 38 1 3.3845 -0.9251 -6.2342 39 1 3.3405 0.9745 -7.9288 40 1 2.5281 3.1891 -6.9933 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:56 Heat of formation + Delta-G solvation = 13.907417 kcal Electronic energy + Delta-G solvation = -18472.383257 eV Core-core repulsion = 15799.035520 eV Total energy + Delta-G solvation = -2673.347738 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.85615 -37.06361 -34.98997 -32.43414 -29.88927 -28.30141 -27.23494 -27.01741 -25.44032 -23.68808 -22.79973 -19.89239 -19.76113 -18.77433 -16.82250 -16.14789 -15.60888 -14.86920 -14.57548 -14.41394 -14.14998 -13.48047 -13.36665 -12.97520 -12.62280 -12.50281 -12.40266 -12.12698 -11.78371 -11.76014 -11.49865 -11.36074 -11.12618 -11.10705 -10.79876 -10.78771 -10.49880 -10.42482 -10.23094 -10.00166 -9.23123 -8.92457 -8.59355 -8.46643 -8.22327 -7.52841 -5.84393 -3.81515 1.03522 1.65971 2.05340 2.75940 3.40433 3.47920 3.53259 4.53536 4.59963 4.91000 5.04559 5.07740 5.18205 5.33306 5.51549 5.53294 5.59755 5.74653 5.81270 5.82963 5.92745 6.01322 6.05539 6.10338 6.11272 6.14454 6.24020 6.35550 6.44839 6.48516 6.53419 6.65820 6.76996 7.06075 7.58727 7.72505 8.04866 8.10208 8.20710 8.64412 9.24262 9.79740 11.27832 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.004889 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.369643 B = 5725.637811 C = 6200.383082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.657 5.657 14 C 0.065 3.935 15 C 0.006 3.994 16 C -0.137 4.137 17 C -0.126 4.126 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.130 4.130 21 C -0.233 4.233 22 S 0.099 5.901 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.256 0.744 29 H 0.331 0.669 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 4.584 -18.816 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.288 5.288 14 C -0.065 4.065 15 C 0.004 3.996 16 C -0.195 4.195 17 C -0.184 4.184 18 C -0.261 4.261 19 C -0.181 4.181 20 C -0.161 4.161 21 C -0.368 4.368 22 S 0.364 5.636 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.113 5.602 -17.405 18.741 hybrid contribution 0.616 -0.704 -1.299 1.601 sum -3.497 4.898 -18.704 19.649 Atomic orbital electron populations 1.22555 0.99599 1.01149 1.00593 1.21795 0.89824 0.98185 0.92249 0.91860 1.19109 0.96253 0.95349 0.89678 1.21185 0.91883 1.32575 1.06683 0.92295 1.24996 0.97863 0.96006 0.96077 1.69973 1.35017 1.37190 1.12416 0.86611 0.86665 0.77535 0.77602 1.19847 1.21485 1.21333 1.60570 1.57687 1.08382 1.02166 1.22036 0.98357 0.95691 0.90447 1.19181 0.97859 0.92841 0.89726 1.21894 0.98292 0.97309 1.02016 1.21764 0.93357 1.01471 1.01775 1.24729 1.05512 0.96849 0.99008 1.20008 1.05080 1.00743 0.92254 1.20117 1.02849 0.92337 1.00815 1.25611 1.10195 1.02425 0.98564 1.84433 1.65255 1.06594 1.07293 0.92489 0.94472 0.93063 0.96540 0.96521 0.93460 0.85022 0.91069 0.96061 0.92488 0.91035 0.93008 0.92765 0.89654 0.93671 0.84569 0.84793 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.16 37.16 0.34 -2.68 16 2 C 0.09 1.77 2.53 -67.71 -0.17 1.60 16 3 H 0.06 1.31 7.80 -51.93 -0.40 0.91 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.48 -13.58 8.84 -34.44 -0.30 -13.89 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.66 -11.84 5.17 -106.72 -0.55 -12.39 16 14 C 0.07 1.01 3.53 -3.82 -0.01 1.00 16 15 C 0.01 0.09 0.73 -155.66 -0.11 -0.03 16 16 C -0.14 -1.64 8.01 37.15 0.30 -1.34 16 17 C -0.13 -1.82 8.18 37.16 0.30 -1.52 16 18 C -0.14 -1.83 5.13 -36.00 -0.18 -2.02 16 19 C -0.15 -1.75 9.31 -41.21 -0.38 -2.14 16 20 C -0.13 -1.37 10.18 -41.21 -0.42 -1.79 16 21 C -0.23 -2.47 11.23 29.04 0.33 -2.14 16 22 S 0.10 1.21 21.84 -107.50 -2.35 -1.13 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 25 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.33 5.54 6.51 -39.30 -0.26 5.29 16 30 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 31 H 0.02 0.32 7.25 -51.93 -0.38 -0.06 16 32 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.07 0.88 6.57 -51.92 -0.34 0.54 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.40 7.60 -51.93 -0.39 1.01 16 37 H 0.04 0.57 7.95 -51.93 -0.41 0.15 16 38 H 0.14 1.41 8.01 -52.49 -0.42 0.98 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -29.92 334.05 -9.44 -39.36 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.74 Total: 1.58 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -0.55 Total: -22.90 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.18 Total: -39.10 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.35 Total: -1.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.92 -9.44 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.266 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds