Wall clock time and date at job start Mon Mar 30 2020 06:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47163 * 2 1 4 4 C 1.53002 * 109.47007 * 120.00140 * 2 1 3 5 5 C 1.50698 * 109.46907 * 184.99787 * 4 2 1 6 6 H 1.08001 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99909 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00120 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99916 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47333 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46998 * 120.00218 * 9 7 5 12 12 H 1.48506 * 109.47165 * 240.00205 * 9 7 5 13 13 N 1.46893 * 109.46889 * 240.00240 * 2 1 3 14 14 C 1.46898 * 111.00147 * 85.00174 * 13 2 1 15 15 C 1.53006 * 109.47360 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47134 * 59.99965 * 15 14 13 17 17 C 1.52999 * 109.46731 * 299.99957 * 15 14 13 18 18 C 1.50699 * 109.47064 * 180.02562 * 15 14 13 19 19 C 1.33390 * 125.20296 * 180.02562 * 18 15 14 20 20 C 1.38425 * 114.92123 * 179.97438 * 19 18 15 21 21 C 1.33383 * 114.92174 * 359.97438 * 20 19 18 22 22 S 1.75887 * 109.59638 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.46853 * 299.99604 * 1 2 3 24 24 H 1.08997 * 109.46963 * 59.99618 * 1 2 3 25 25 H 1.08995 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47296 * 305.00229 * 4 2 1 27 27 H 1.09002 * 109.46929 * 65.00195 * 4 2 1 28 28 H 0.97003 * 120.00383 * 179.97438 * 8 7 5 29 29 H 1.00893 * 111.00269 * 321.04440 * 13 2 1 30 30 H 1.09001 * 109.47382 * 59.99768 * 14 13 2 31 31 H 1.09004 * 109.46994 * 299.99712 * 14 13 2 32 32 H 1.08998 * 109.47511 * 180.02562 * 16 15 14 33 33 H 1.09007 * 109.47136 * 300.00154 * 16 15 14 34 34 H 1.09000 * 109.47598 * 59.99734 * 16 15 14 35 35 H 1.09001 * 109.47125 * 299.99577 * 17 15 14 36 36 H 1.08997 * 109.47137 * 59.99986 * 17 15 14 37 37 H 1.09000 * 109.46677 * 179.97438 * 17 15 14 38 38 H 1.07997 * 122.53530 * 0.23800 * 19 18 15 39 39 H 1.08001 * 122.53542 * 180.02562 * 20 19 18 40 40 H 1.07999 * 125.20481 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1927 2.3583 8 7 3.5764 -1.8370 3.3000 9 14 6.0920 -1.0603 2.4373 10 1 6.5836 -0.2901 1.2668 11 1 6.4861 -0.3641 3.6883 12 1 6.6862 -2.4212 2.4199 13 7 2.0196 -0.6924 -1.1994 14 6 2.0824 0.2227 -2.3468 15 6 2.5962 -0.5327 -3.5742 16 6 1.6472 -1.6890 -3.8955 17 6 3.9935 -1.0849 -3.2852 18 6 2.6612 0.4062 -4.7511 19 6 3.0654 0.0744 -5.9782 20 6 3.0396 1.1067 -6.9000 21 6 2.6138 2.2768 -6.4217 22 16 2.2132 2.1068 -4.7175 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6054 -0.2619 2.1370 27 1 1.7516 -1.7716 1.2055 28 1 4.0607 -2.2438 4.0354 29 1 1.4496 -1.4978 -1.4100 30 1 2.7588 1.0463 -2.1182 31 1 1.0870 0.6164 -2.5525 32 1 2.0134 -2.2275 -4.7696 33 1 1.6006 -2.3681 -3.0441 34 1 0.6517 -1.2957 -4.1013 35 1 4.6695 -0.2611 -3.0563 36 1 3.9468 -1.7639 -2.4338 37 1 4.3592 -1.6235 -4.1594 38 1 3.3845 -0.9251 -6.2342 39 1 3.3405 0.9745 -7.9288 40 1 2.5281 3.1891 -6.9933 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:55 Heat of formation + Delta-G solvation = -2.423733 kcal Electronic energy + Delta-G solvation = -18473.091429 eV Core-core repulsion = 15799.035520 eV Total energy + Delta-G solvation = -2674.055910 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93308 -38.26762 -36.34606 -34.50653 -31.38890 -29.34755 -28.99869 -28.10292 -26.64990 -25.09454 -24.37403 -21.45329 -20.93725 -19.65236 -18.37175 -17.81293 -16.66849 -16.52527 -16.06185 -15.76491 -15.48056 -14.60887 -14.54045 -14.46481 -14.04461 -13.63895 -13.53804 -13.38398 -13.21960 -13.14966 -12.89486 -12.82808 -12.62330 -12.47901 -12.34929 -12.10865 -11.93476 -11.85608 -11.77686 -11.35635 -11.07663 -11.02753 -10.46931 -9.47910 -9.38057 -8.97221 -8.07555 -6.11556 0.16675 0.77067 1.19177 1.41278 1.42454 1.55187 1.92376 2.48820 3.22669 3.34661 3.83119 3.90887 4.04190 4.25200 4.29530 4.33627 4.46470 4.56485 4.64238 4.71872 4.76447 4.77727 4.87779 4.95710 5.05591 5.07961 5.11516 5.22497 5.26746 5.29569 5.40636 5.45936 5.52943 5.57552 5.67087 5.70805 5.92876 6.34336 6.49556 6.75420 7.02506 7.53887 9.04838 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.004889 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.369643 B = 5725.637811 C = 6200.383082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 H 0.053 0.947 4 C 0.039 3.961 5 C -0.493 4.493 6 H 0.054 0.946 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.074 3.926 15 C 0.013 3.987 16 C -0.133 4.133 17 C -0.121 4.121 18 C -0.164 4.164 19 C -0.145 4.145 20 C -0.136 4.136 21 C -0.224 4.224 22 S 0.065 5.935 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.055 0.945 26 H -0.009 1.009 27 H -0.007 1.007 28 H 0.258 0.742 29 H 0.339 0.661 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 4.887 -21.307 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 H 0.071 0.929 4 C 0.002 3.998 5 C -0.532 4.532 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.302 5.302 14 C -0.056 4.056 15 C 0.011 3.989 16 C -0.191 4.191 17 C -0.179 4.179 18 C -0.281 4.281 19 C -0.175 4.175 20 C -0.166 4.166 21 C -0.359 4.359 22 S 0.329 5.671 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.009 0.991 27 H 0.011 0.989 28 H 0.067 0.933 29 H 0.158 0.842 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.796 5.908 -19.912 21.114 hybrid contribution 0.521 -0.775 -0.580 1.100 sum -3.275 5.133 -20.492 21.378 Atomic orbital electron populations 1.22407 0.96818 1.01845 1.01752 1.21451 0.91997 0.96723 0.90960 0.92857 1.18980 0.95091 0.94255 0.91489 1.21484 0.93355 1.31999 1.06351 0.92734 1.25813 1.02616 0.95788 0.95821 1.70095 1.36887 1.38223 1.13111 0.85571 0.81018 0.77679 0.77781 1.19184 1.20912 1.20787 1.60384 1.58136 1.09154 1.02498 1.21953 0.98465 0.94911 0.90275 1.19039 0.97317 0.93355 0.89206 1.21859 0.98223 0.96621 1.02385 1.21696 0.94002 1.00520 1.01713 1.24604 1.07595 0.96761 0.99167 1.20286 1.03678 1.01734 0.91838 1.20423 1.02480 0.91808 1.01929 1.25925 1.09199 1.03552 0.97214 1.84546 1.66102 1.06930 1.09516 0.92547 0.92044 0.92601 0.99110 0.98851 0.93340 0.84155 0.92964 0.95143 0.90874 0.91734 0.92464 0.94450 0.91998 0.91570 0.83180 0.82107 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 9.16 71.98 0.66 -4.90 16 2 C 0.10 3.99 2.53 44.92 0.11 4.10 16 3 H 0.05 2.25 7.80 -2.39 -0.02 2.23 16 4 C 0.04 2.06 4.65 29.85 0.14 2.20 16 5 C -0.49 -28.28 8.84 25.60 0.23 -28.05 16 6 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 8 N -0.94 -58.21 13.29 21.45 0.28 -57.93 16 9 Si 0.95 46.03 29.54 68.60 2.03 48.06 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.67 -24.25 5.17 -491.56 -2.54 -26.79 16 14 C 0.07 2.27 3.53 86.31 0.30 2.58 16 15 C 0.01 0.34 0.73 -52.93 -0.04 0.31 16 16 C -0.13 -2.95 8.01 71.98 0.58 -2.37 16 17 C -0.12 -3.45 8.18 71.98 0.59 -2.86 16 18 C -0.16 -3.92 5.13 24.59 0.13 -3.79 16 19 C -0.15 -2.97 9.31 21.22 0.20 -2.77 16 20 C -0.14 -2.42 10.18 21.22 0.22 -2.21 16 21 C -0.22 -4.13 11.23 66.72 0.75 -3.38 16 22 S 0.06 1.50 21.84 -56.49 -1.23 0.27 16 23 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.06 1.73 7.45 -2.39 -0.02 1.71 16 25 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.34 11.28 6.51 -89.70 -0.58 10.70 16 30 H 0.05 1.80 7.87 -2.39 -0.02 1.78 16 31 H 0.03 0.88 7.25 -2.38 -0.02 0.87 16 32 H 0.07 1.38 7.93 -2.39 -0.02 1.36 16 33 H 0.06 1.51 6.57 -2.38 -0.02 1.50 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 2.04 7.60 -2.39 -0.02 2.02 16 37 H 0.07 1.56 7.95 -2.39 -0.02 1.54 16 38 H 0.15 2.59 8.01 -2.91 -0.02 2.56 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -64.77 334.05 3.27 -61.50 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.41 Total: 15.87 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 4.32 Total: -40.97 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.26 Total: -84.72 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.23 Total: 0.27 kcal Total: -64.77 3.27 -61.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.076 kcal (2) G-P(sol) polarization free energy of solvation -64.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds